Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020489.1
Length=40489
Score E
Sequences producing significant alignments: (Bits) Value
seq6089 239 1e-58
seq11405 105 2e-18
seq12569 102 2e-17
>seq6089
Length=13452
Score = 239 bits (264), Expect = 1e-58
Identities = 495/723 (68%), Gaps = 44/723 (6%)
Strand=Plus/Minus
Query 26828 GCGCGGTGTCGAAGATGCTCGGGCACGGTAGAGACCAGTCGATGCACTCGGCGGCAGCGC 26887
|||||| || |||||| ||||||||| | |||||||||||| ||||| || | ||
Sbjct 10227 GCGCGG-GT-GAAGATCGACGGGCACGGGATCGACCAGTCGATGATTTCGGCCGCCGTGC 10170
Query 26888 GCCACGGCTTGAGCCTGCCCTTGCGGACCGCCGG-GCTTTTCGGATCTCCATGCGTCGGT 26946
|||| | ||| |||| ||||||| || || || | | || | ||||| |||||
Sbjct 10169 GCCAGACCAGCAGCTTGCCGCTGCGGACGGCGGGCGCATCT-GGCTTGCCATGGGTCGGC 10111
Query 26947 GCAGGCCAGACGATCCGGCGGCCATCGCAGCGCGCCACCAGAAACAGGCGCTTGCGGATC 27006
|||||||||||| | || |||||||| || | ||| |||||||||||||||
Sbjct 10110 TTGGGCCAGACGATCTTCTGCCCGTCGCAGCGTGCGATCAGGAACAGGCGCTTGCGGGAG 10051
Query 27007 GTAGGGGCGCCGAAGTCGCAGGCGCGCAGCTCGCGCCATTCGACGCGATAGCC-GCGCTC 27065
|| |||||||| ||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 10050 GTCGGGGCGCCATAGTCGCAGGCGCGCATTTCACGCCATTCGACGCGGTAGCCGGCGC-G 9992
Query 27066 GCGCAGCTGGCGCACCCACAGCTCAAATGTTTGGCCGGCGAATTCTTTGATCGGCTGGCC 27125
|||||||| ||||||| | || || || | ||| | | | ||| | ||
Sbjct 9991 GCGCAGCTTCGCCACCCACTGGTCGAACGTCTTGCCCTTGCCCGCCGGGCATGGCCGCCC 9932
Query 27126 GTCCTCGCCCACCGGCCCCCAGGTCGTGAACTCCTCGACGTTTTCGAGAAGGATCACGTC 27185
|| |||||| ||||||||| || ||| |||||||| || || || | ||| | |
Sbjct 9931 ATCGGCGCCCAGCGGCCCCCAAGTGCGGAATTCCTCGACATTCTCCAGCATGATGATCGC 9872
Query 27186 AGGGCGCTG---CGCGCGGGGCAGATCCGCCCAGCGGATCACCACCCACGCGAGATCGCG 27242
|||||| | || || | || | || ||||| | ||||||||| |||||||||||
Sbjct 9871 TGGGCGCAGGGCCGGGCCGAGCCGGTCGACCCAGTGATGCACCACCCAGGCGAGATCGCG 9812
Query 27243 GATATTGCGGTCG-CGGACGCTTG-CGCCCTTCGCCTTCGAGAAATGCTTGCAGTCCGGC 27300
||||| ||| ||| ||||| ||||||||||||| ||||||||||||||| |||
Sbjct 9811 AATATTCTTCTCGACGG--GCTTGCCGCCCTTCGCCTTGCTGAAATGCTTGCAGTCGGGC 9754
Query 27301 GAGGCCCATACCATGCCGACC---TTGCGGC------CCGC----------------GGT 27335
||| ||| | | ||||| | ||||| ||| |||
Sbjct 9753 GAGAACCAGGCGA-GCCGAACGGGACGCGGCTTCATTTCGCCATTGTCGTTGGCGAAGGT 9695
Query 27336 CACGGTGGC---CGGGTCAACGTCCCAGATGTTGCTGTC-GAGATGCAATGTCTCGGGGT 27391
||| | | ||| || || |||||| | | ||| | || ||| || | || |
Sbjct 9694 CACCGCCTCCAGCGGATCGACCGCCCAGACGCT-CTGACACAGGTGCCGCGTGTTCGGAT 9636
Query 27392 GGTTGGCTGCATGCAGCGCCAGCGCCGCGGCAGAGTGGTTGATGGCGACATCGGGCGAGC 27451
| ||||| ||||||| || | || ||| | ||||||| ||||| ||| | |
Sbjct 9635 GATTGGCCGCATGCATGGCGACGGCTTCGGGATCATGGTTGACCGCGACGTCGACCTGCC 9576
Query 27452 GGCCAAGGGCCTGCTCGATGCCGGTCGAGGCGCCGCCGCCTCCGGCAAAACAGTCGATGA 27511
| | | ||| | |||||||||||||| ||||||||||| || ||||| ||||| ||
Sbjct 9575 GCCGCAACGCCAGTTCGATGCCGGTCGACGCGCCGCCGCCGCCTGCAAAGTTGTCGACGA 9516
Query 27512 TGA 27514
|||
Sbjct 9515 TGA 9513
Score = 131 bits (144), Expect = 4e-26
Identities = 134/175 (77%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 26199 CGCATCGTGACCGGTCACGCCAGTGTGGTGCTGGGCCAGGAAGGCGGCGCCGAGGGCATG 26258
||| ||| | ||| || | ||| | ||||||||||| ||| ||||| | || |||||
Sbjct 10687 CGCTTCGCGGCCGATCGCACCACCATTGTGCTGGGCCATGAACGCGGCAACCAGTGCATG 10628
Query 26259 CTTGATGCCGCCAGCGACGACGGTGCCAAGAGGCTGGCCGAGGTCGAGCGCGCGCGGCGC 26318
||| | | || ||||||| ||||| || |||| | | || ||||||||||| |||||
Sbjct 10627 CTTCGTTGCACCTGCGACGATCGTGCCGAGCGGCTTGGCCAGATCGAGCGCGCGGGGCGC 10568
Query 26319 TTGCCCGGGCCGCTCGCCGTATCCGGTCTGCACCAGCGTCGGCGCGATCAGGGCG 26373
|||||| || ||| || ||||||||||| |||| ||||| ||||||||||||
Sbjct 10567 TTGCCCTTCCCTCTCCCCATATCCGGTCTGGACCATAGTCGGGGCGATCAGGGCG 10513
>seq11405
Length=110570
Score = 105 bits (116), Expect = 2e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 24106 TCGGTCATTTGATTGATCGGGAGCCACTCACCCCACTGTTTGTGGTGGAACGCCACGCCA 24165
||| |||| || ||| || ||||||| |||||||| ||| ||| ||| |||
Sbjct 75240 TCGCTCATCTGTGAGATTGGTCGCCACTCGCCCCACTGCTTGAACATGAAGGCCGTGCCC 75299
Query 24166 GCGCTTACGCACTGGTCGCGCAGGCTGCGGACCCAATCCGGGTGCATGGGCCGGGCGCGC 24225
|| |||||||||||||||||||| | |||| || || |||||||| || || |
Sbjct 75300 ACGGCCTCGCACTGGTCGCGCAGGCTGAGCGCCCAGTCGGGATGCATGGGACGCGCACCG 75359
Query 24226 GGGCCGCTCTCGCCGCCGACGATCAC 24251
||||||||||||||||||||||||||
Sbjct 75360 GGGCCGCTCTCGCCGCCGACGATCAC 75385
>seq12569
Length=80069
Score = 102 bits (112), Expect = 2e-17
Identities = 344/521 (66%), Gaps = 45/521 (9%)
Strand=Plus/Plus
Query 26815 GCCATGATCTCCTGCGCGGTGTCGAAGATGCTCGGGCACGGTAGAGACCAGTCGATGCAC 26874
||| | | ||||| | |||| |||||||| |||||| || | | | ||||||||
Sbjct 65195 GCCTTCAGCTCCTCCTGGGTGGCGAAGATGGACGGGCAGGGCCGGGTGAAATCGATGCAG 65254
Query 26875 TCGGCGGCAGCGCGCC-ACGGCTTGAGCCTGCCCTTGCGGACCGCCGGGCTTTTCGGATC 26933
|||||||| |||| | | |||||||||| || | |||| || || ||| ||| |
Sbjct 65255 TCGGCGGC-GCGCTCGTAGGGCTTGAGCC--CCTTGGCGG--CGGCGATCTTG-CGGGGC 65308
Query 26934 TCCATGCGTCGGTGCAGGCCAGACGATCCGGCGGCCATCGCAGCGCGCCACCAGAAACAG 26993
| || || || | ||| |||||| | ||| ||||| ||||| | ||| |||||
Sbjct 65309 GCG-TGGGTTGGCCCCTCCCACACGATCGGCATGCCGTCGCAACGCGCGATCAGGAACAG 65367
Query 26994 GCGCTTGCGGATCGTAGGGGCGCCGAAGTCGCAGGCGCGCAG--CTCGCGCCATTCGACG 27051
|||| | | |||||| || | || | | | | ||||| | | ||||||||||||
Sbjct 65368 GCGCCTTCTGATCGTGGGAACCCC--ACTATCCGCCGCGCTTTCCACCCGCCATTCGACG 65425
Query 27052 CGATAGCCGCGCTCGCGCAGCTGGCGCACCCACAGCTCAAATGT-------TT---GGCC 27101
||||||| || |||| |||| ||||||||| || || || ||||
Sbjct 65426 GTGTAGCCGCACTGTTCCAGCCGGCGGACCCACAGCCGGAAGGTGGCGCCCTTGCGGGCC 65485
Query 27102 G----GCGAATTCTTTGATCGGCTGGCCGTC------CTCGCCCACCGGCCCCC-AGGTC 27150
| | | | || || | ||| |||| || | | |||||||| | ||
Sbjct 65486 GGATCGGGCAGTCGCCGACC--CTGTTCGTCGGGAGGCTTG---AGCGGCCCCCAATCTC 65540
Query 27151 GTGAACTCCTCGACGTTTTCGAGAAGGATCACGTCAGGGCGCTGCGCGCGGGGCAGATCC 27210
| |||||||| ||||| || |||| ||| ||||| || || | || | | |||| |
Sbjct 65541 G-AAACTCCTCAACGTTCTCCAGAAAGATGACGTCCGGCCGGTTCGATCCGAGCAGCTTG 65599
Query 27211 GCCCAGCGGATCACCACCCACGCGAGATCGCGGATATTGCGGTCGCGGACGCTTGC---G 27267
|| |||||||||||| || || |||| | ||||| | |||| || |
Sbjct 65600 GCGACCTTGATCACCACCCAGGCCAGGCCGCG---AATGCGGGGACTGACGGGCGCGCTG 65656
Query 27268 CCCTTCGCCTTCGAGAAATGCTTGCAGTCCGGCGAGGCCCA 27308
||||||||||| |||||||| |||||| ||||| |||||
Sbjct 65657 CCCTTCGCCTTGGAGAAATGACGGCAGTCGGGCGACGCCCA 65697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129420052238858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |