Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq6089 239 1e-58 seq11405 105 2e-18 seq12569 102 2e-17 >seq6089 Length=13452 Score = 239 bits (264), Expect = 1e-58 Identities = 495/723 (68%), Gaps = 44/723 (6%) Strand=Plus/Minus Query 26828 GCGCGGTGTCGAAGATGCTCGGGCACGGTAGAGACCAGTCGATGCACTCGGCGGCAGCGC 26887 |||||| || |||||| ||||||||| | |||||||||||| ||||| || | || Sbjct 10227 GCGCGG-GT-GAAGATCGACGGGCACGGGATCGACCAGTCGATGATTTCGGCCGCCGTGC 10170 Query 26888 GCCACGGCTTGAGCCTGCCCTTGCGGACCGCCGG-GCTTTTCGGATCTCCATGCGTCGGT 26946 |||| | ||| |||| ||||||| || || || | | || | ||||| ||||| Sbjct 10169 GCCAGACCAGCAGCTTGCCGCTGCGGACGGCGGGCGCATCT-GGCTTGCCATGGGTCGGC 10111 Query 26947 GCAGGCCAGACGATCCGGCGGCCATCGCAGCGCGCCACCAGAAACAGGCGCTTGCGGATC 27006 |||||||||||| | || |||||||| || | ||| ||||||||||||||| Sbjct 10110 TTGGGCCAGACGATCTTCTGCCCGTCGCAGCGTGCGATCAGGAACAGGCGCTTGCGGGAG 10051 Query 27007 GTAGGGGCGCCGAAGTCGCAGGCGCGCAGCTCGCGCCATTCGACGCGATAGCC-GCGCTC 27065 || |||||||| ||||||||||||||| || |||||||||||||| ||||| |||| Sbjct 10050 GTCGGGGCGCCATAGTCGCAGGCGCGCATTTCACGCCATTCGACGCGGTAGCCGGCGC-G 9992 Query 27066 GCGCAGCTGGCGCACCCACAGCTCAAATGTTTGGCCGGCGAATTCTTTGATCGGCTGGCC 27125 |||||||| ||||||| | || || || | ||| | | | ||| | || Sbjct 9991 GCGCAGCTTCGCCACCCACTGGTCGAACGTCTTGCCCTTGCCCGCCGGGCATGGCCGCCC 9932 Query 27126 GTCCTCGCCCACCGGCCCCCAGGTCGTGAACTCCTCGACGTTTTCGAGAAGGATCACGTC 27185 || |||||| ||||||||| || ||| |||||||| || || || | ||| | | Sbjct 9931 ATCGGCGCCCAGCGGCCCCCAAGTGCGGAATTCCTCGACATTCTCCAGCATGATGATCGC 9872 Query 27186 AGGGCGCTG---CGCGCGGGGCAGATCCGCCCAGCGGATCACCACCCACGCGAGATCGCG 27242 |||||| | || || | || | || ||||| | ||||||||| ||||||||||| Sbjct 9871 TGGGCGCAGGGCCGGGCCGAGCCGGTCGACCCAGTGATGCACCACCCAGGCGAGATCGCG 9812 Query 27243 GATATTGCGGTCG-CGGACGCTTG-CGCCCTTCGCCTTCGAGAAATGCTTGCAGTCCGGC 27300 ||||| ||| ||| ||||| ||||||||||||| ||||||||||||||| ||| Sbjct 9811 AATATTCTTCTCGACGG--GCTTGCCGCCCTTCGCCTTGCTGAAATGCTTGCAGTCGGGC 9754 Query 27301 GAGGCCCATACCATGCCGACC---TTGCGGC------CCGC----------------GGT 27335 ||| ||| | | ||||| | ||||| ||| ||| Sbjct 9753 GAGAACCAGGCGA-GCCGAACGGGACGCGGCTTCATTTCGCCATTGTCGTTGGCGAAGGT 9695 Query 27336 CACGGTGGC---CGGGTCAACGTCCCAGATGTTGCTGTC-GAGATGCAATGTCTCGGGGT 27391 ||| | | ||| || || |||||| | | ||| | || ||| || | || | Sbjct 9694 CACCGCCTCCAGCGGATCGACCGCCCAGACGCT-CTGACACAGGTGCCGCGTGTTCGGAT 9636 Query 27392 GGTTGGCTGCATGCAGCGCCAGCGCCGCGGCAGAGTGGTTGATGGCGACATCGGGCGAGC 27451 | ||||| ||||||| || | || ||| | ||||||| ||||| ||| | | Sbjct 9635 GATTGGCCGCATGCATGGCGACGGCTTCGGGATCATGGTTGACCGCGACGTCGACCTGCC 9576 Query 27452 GGCCAAGGGCCTGCTCGATGCCGGTCGAGGCGCCGCCGCCTCCGGCAAAACAGTCGATGA 27511 | | | ||| | |||||||||||||| ||||||||||| || ||||| ||||| || Sbjct 9575 GCCGCAACGCCAGTTCGATGCCGGTCGACGCGCCGCCGCCGCCTGCAAAGTTGTCGACGA 9516 Query 27512 TGA 27514 ||| Sbjct 9515 TGA 9513 Score = 131 bits (144), Expect = 4e-26 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 26199 CGCATCGTGACCGGTCACGCCAGTGTGGTGCTGGGCCAGGAAGGCGGCGCCGAGGGCATG 26258 ||| ||| | ||| || | ||| | ||||||||||| ||| ||||| | || ||||| Sbjct 10687 CGCTTCGCGGCCGATCGCACCACCATTGTGCTGGGCCATGAACGCGGCAACCAGTGCATG 10628 Query 26259 CTTGATGCCGCCAGCGACGACGGTGCCAAGAGGCTGGCCGAGGTCGAGCGCGCGCGGCGC 26318 ||| | | || ||||||| ||||| || |||| | | || ||||||||||| ||||| Sbjct 10627 CTTCGTTGCACCTGCGACGATCGTGCCGAGCGGCTTGGCCAGATCGAGCGCGCGGGGCGC 10568 Query 26319 TTGCCCGGGCCGCTCGCCGTATCCGGTCTGCACCAGCGTCGGCGCGATCAGGGCG 26373 |||||| || ||| || ||||||||||| |||| ||||| |||||||||||| Sbjct 10567 TTGCCCTTCCCTCTCCCCATATCCGGTCTGGACCATAGTCGGGGCGATCAGGGCG 10513 >seq11405 Length=110570 Score = 105 bits (116), Expect = 2e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24106 TCGGTCATTTGATTGATCGGGAGCCACTCACCCCACTGTTTGTGGTGGAACGCCACGCCA 24165 ||| |||| || ||| || ||||||| |||||||| ||| ||| ||| ||| Sbjct 75240 TCGCTCATCTGTGAGATTGGTCGCCACTCGCCCCACTGCTTGAACATGAAGGCCGTGCCC 75299 Query 24166 GCGCTTACGCACTGGTCGCGCAGGCTGCGGACCCAATCCGGGTGCATGGGCCGGGCGCGC 24225 || |||||||||||||||||||| | |||| || || |||||||| || || | Sbjct 75300 ACGGCCTCGCACTGGTCGCGCAGGCTGAGCGCCCAGTCGGGATGCATGGGACGCGCACCG 75359 Query 24226 GGGCCGCTCTCGCCGCCGACGATCAC 24251 |||||||||||||||||||||||||| Sbjct 75360 GGGCCGCTCTCGCCGCCGACGATCAC 75385 >seq12569 Length=80069 Score = 102 bits (112), Expect = 2e-17 Identities = 344/521 (66%), Gaps = 45/521 (9%) Strand=Plus/Plus Query 26815 GCCATGATCTCCTGCGCGGTGTCGAAGATGCTCGGGCACGGTAGAGACCAGTCGATGCAC 26874 ||| | | ||||| | |||| |||||||| |||||| || | | | |||||||| Sbjct 65195 GCCTTCAGCTCCTCCTGGGTGGCGAAGATGGACGGGCAGGGCCGGGTGAAATCGATGCAG 65254 Query 26875 TCGGCGGCAGCGCGCC-ACGGCTTGAGCCTGCCCTTGCGGACCGCCGGGCTTTTCGGATC 26933 |||||||| |||| | | |||||||||| || | |||| || || ||| ||| | Sbjct 65255 TCGGCGGC-GCGCTCGTAGGGCTTGAGCC--CCTTGGCGG--CGGCGATCTTG-CGGGGC 65308 Query 26934 TCCATGCGTCGGTGCAGGCCAGACGATCCGGCGGCCATCGCAGCGCGCCACCAGAAACAG 26993 | || || || | ||| |||||| | ||| ||||| ||||| | ||| ||||| Sbjct 65309 GCG-TGGGTTGGCCCCTCCCACACGATCGGCATGCCGTCGCAACGCGCGATCAGGAACAG 65367 Query 26994 GCGCTTGCGGATCGTAGGGGCGCCGAAGTCGCAGGCGCGCAG--CTCGCGCCATTCGACG 27051 |||| | | |||||| || | || | | | | ||||| | | |||||||||||| Sbjct 65368 GCGCCTTCTGATCGTGGGAACCCC--ACTATCCGCCGCGCTTTCCACCCGCCATTCGACG 65425 Query 27052 CGATAGCCGCGCTCGCGCAGCTGGCGCACCCACAGCTCAAATGT-------TT---GGCC 27101 ||||||| || |||| |||| ||||||||| || || || |||| Sbjct 65426 GTGTAGCCGCACTGTTCCAGCCGGCGGACCCACAGCCGGAAGGTGGCGCCCTTGCGGGCC 65485 Query 27102 G----GCGAATTCTTTGATCGGCTGGCCGTC------CTCGCCCACCGGCCCCC-AGGTC 27150 | | | | || || | ||| |||| || | | |||||||| | || Sbjct 65486 GGATCGGGCAGTCGCCGACC--CTGTTCGTCGGGAGGCTTG---AGCGGCCCCCAATCTC 65540 Query 27151 GTGAACTCCTCGACGTTTTCGAGAAGGATCACGTCAGGGCGCTGCGCGCGGGGCAGATCC 27210 | |||||||| ||||| || |||| ||| ||||| || || | || | | |||| | Sbjct 65541 G-AAACTCCTCAACGTTCTCCAGAAAGATGACGTCCGGCCGGTTCGATCCGAGCAGCTTG 65599 Query 27211 GCCCAGCGGATCACCACCCACGCGAGATCGCGGATATTGCGGTCGCGGACGCTTGC---G 27267 || |||||||||||| || || |||| | ||||| | |||| || | Sbjct 65600 GCGACCTTGATCACCACCCAGGCCAGGCCGCG---AATGCGGGGACTGACGGGCGCGCTG 65656 Query 27268 CCCTTCGCCTTCGAGAAATGCTTGCAGTCCGGCGAGGCCCA 27308 ||||||||||| |||||||| |||||| ||||| ||||| Sbjct 65657 CCCTTCGCCTTGGAGAAATGACGGCAGTCGGGCGACGCCCA 65697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129420052238858