Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq11812 86.0 8e-12 seq9432 82.4 1e-10 >seq11812 Length=28321 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 74812 GAGAGGACTTGAACCTCCACGGA--TAAATCCACTGGAACCTAAACCCAGCGCGTCTACC 74869 ||||||||| |||||||||||| | || ||||||| |||| || |||||||||||||| Sbjct 13099 GAGAGGACTCGAACCTCCACGGCCGTTAAGCCACTGGCACCTGAAGCCAGCGCGTCTACC 13040 Query 74870 AATTCCGCCAC 74880 ||||||||||| Sbjct 13039 AATTCCGCCAC 13029 >seq9432 Length=33926 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 74809 GATGAGAGGACTTGAACCTCCACGGATAAATCCACTGGAACCTAAACCCAGCGCGTCTAC 74868 |||||||||||| ||||||||||| | | |||||||||||| |||| |||||||| Sbjct 32661 GATGAGAGGACTCGAACCTCCACGCCTCGCGGCGCTGGAACCTAAATCCAGTGCGTCTAC 32602 Query 74869 CAATTCCGCCACATC 74883 || |||||||||||| Sbjct 32601 CAGTTCCGCCACATC 32587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633394348983720