Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020839.1 Length=39573 Score E Sequences producing significant alignments: (Bits) Value seq9622 531 1e-146 >seq9622 Length=151425 Score = 531 bits (588), Expect = 1e-146 Identities = 762/1065 (72%), Gaps = 23/1065 (2%) Strand=Plus/Plus Query 20668 CGTCAGATCCTCGGTCTTCGGGCGTGCGATCTTGATGCGCGGATAGCGTTTCTGAGGCCC 20727 || ||||||||| | | ||| || ||||| | | |||||||||| || || ||||| Sbjct 100844 CGCCAGATCCTCCTTTTCCGGCCGGGCGATGGTTAGGCGCGGATAGGCCTTTTGCGGCCC 100903 Query 20728 ATATTCGAGCTGGATCCACGGGCGGATCAGATCCCTGTTGAGGATTGCTGCGAGAGCCAT 20787 |||||||| | ||||||| | | || |||||| | ||||||||| || ||||| || Sbjct 100904 GTATTCGAGGTCGATCCACAGCCTGACCAGATCGCGGTTGAGGATCGCGGCGAGTGCGCG 100963 Query 20788 CGCATCCGAGGTCTCGATATCTTCCTGGACAAGCCGATGCTCCTGGCTGACGGCATGCCC 20847 || || | | |||||| || ||||| || || || || | |||||||| || Sbjct 100964 GGCGTCGGCGCGCTCGATGTCCTCCTGCACCTTGCGGTGTTCTTCCGACACGGCATGGCC 101023 Query 20848 ACCTGCGACGGCATCGGTCGTCGTTGTTTGGCCGAGAACCGCTTTCGAGATCTGCTGATC 20907 || | || ||| |||||||| || || ||||| || ||||| || |||| ||| |||| Sbjct 101024 GCCGGTGATGGCGTCGGTCGTGGTGGTCTGGCCAAGCACCGCCTTTGAGACCTGGCGATC 101083 Query 20908 GAGGTGATTGATCCGCTTCTCATAGAGATCCACCGAAGAGCCGATCGACTTGCTCTCGAC 20967 || | || ||||| ||||| || || | ||| | ||||||||| || |||||| Sbjct 101084 CAGCCAGTCGACGCGCTTTTCATAAAGGTCGATCGAGGCGCCGATCGATTTCGCCTCGAC 101143 Query 20968 GAAGTCGATGCTCATCGTCTCAGGGATGATCGCTGCGCAATCGCCAGCGATATTCGCAAC 21027 ||| ||||| ||| || || |||||||| || |||||||| |||||||| || || Sbjct 101144 GAACTCGATCGCCATGCCGTCCGGCATGATCGCGGCACAATCGCCGGCGATATTGGCCAC 101203 Query 21028 GGCCCGGAAAAGCGTGTCCTTATCCTGCTCGCTCGCACCGGGTTGCCAT--TTGCCGATG 21085 |||||| | ||| || ||| || | ||| | || ||| ||||| ||||||||| Sbjct 101204 CGCCCGGTAGAGCTTGCGCTTGTCGTCGTCGGTGGCGTCGGC--GCCATATTTGCCGATG 101261 Query 21086 CGCAGGGGCTGGCCGTAGGTCTGGGTGAAGATCGCCCAGTCGCGCGCGGTAAACGCCTTG 21145 || | |||||||| ||||||||||||||||||||||||||||| || || |||||| Sbjct 101262 CGGATCGGCTGGCCATAGGTCTGGGTGAAGATCGCCCAGTCGCGATTGGCGAAGGCCTTG 101321 Query 21146 AACATCCAGCCCCAGGCAGCGACGCGGGCAAGACCCGAGCGCAGAAGGATGCCGGACTTG 21205 ||||||||| ||||||| |||||||| || || || || |||| | | ||||||||| Sbjct 101322 AACATCCAGGCCCAGGCGGCGACGCGCGCCAGGCCGGAACGCATCGGCAGGCCGGACTTT 101381 Query 21206 GCCGGGATATCCGCGAAGATGAA-GCGGAAGGCTGGCAGCGGCACCTCGGCGCCGTTATC 21264 || || ||||||||||||| | |||| |||||||||| ||| |||| || Sbjct 101382 GCTTTCATCACCGCGAAGATGAATTCACCAGGC-GGCAGCGGCAGTTCGCGGCCGCCCTC 101440 Query 21265 GTCGAGCAAAAGCGGCGTCGCGAGATCGCTCTTCTGGAAACGGAAGTGGCGCGGATCC-- 21322 ||| |||| | ||||| | |||||| | | ||||||||| ||| ||||| Sbjct 101441 GTCCAGCATCAAGGGCGTGGTGAGATCATGCCTGGCGAAACGGAACCAGCGTTGATCCCA 101500 Query 21323 -CGCCAGATCAGTTTGTCCGGGAAATACTGTCCTTCCGAGGTGTTCCAGACGATCTCGGT 21381 || || | |||| ||| | || |||||||| |||| ||| ||| ||| Sbjct 101501 GCGGTCGAGCCGTTT---CGGCTGCCATTGCCCTTCCGATGTGTCCCACTGGATGCGGGT 101557 Query 21382 GAAGCTGTAGCCCTTCGAGATACAGTCGAGGATGTGGAAGACCTCCTGCTGGAGCTCTTC 21441 |||| || ||||| || | ||| || | || |||| ||| | ||| || || || Sbjct 101558 GAAGGAATAACCCTTGCCGACGCTGTCCAGCACGTCGAAGGTCTCGTCCTGCAGTTCGTC 101617 Query 21442 GCGCTTGAGCCAGTCCCGAACCATGTCGGCGATCTTCACGTC--CTGCGGATCGTCCGAT 21499 ||| | |||||| |||| | | || ||| || || | |||| | || | Sbjct 101618 GCGGGTCAGCCAGGCCCGGATC------GCCTTCTCGACATCGGCGGCGG--CATCGCTT 101669 Query 21500 GCCGGCTCGACGGTGATATCGAGCTGGCTGACAGACCGTTTGCGCGTCCCGATCACGCCG 21559 |||| || || || |||||||| || ||||||||||| || ||||| |||||| Sbjct 101670 GCCGCATCCACCGTCGCCTCGAGCTGCGCCACCGACCGTTTGCGGGTGCCGATGACGCCG 101729 Query 21560 AGGTAATGCGGATCGCGCTCCTCGATCACCTCGGCGAGATCGAGATAGCGCACCGGGTCG 21619 || |||||| | || || ||||||||| |||||||| ||||||||||||||||||||| Sbjct 101730 AGATAATGCAG-TCACGTTCCTCGATCTGTTCGGCGAGCTCGAGATAGCGCACCGGGTCG 101788 Query 21620 CCATGGTCGGCTGCGCGCAGGATCTGCGCCAGGCGGAGCGGGTTCAGGCCGTCGCCGGGA 21679 || |||||||| |||||||||| || || | || ||||||||| |||||| | ||| Sbjct 101789 CCCTGGTCGGCCTCGCGCAGGATGGCGGCGAGCCTGACCGGGTTCAGTCCGTCGGCCGGA 101848 Query 21680 TAGCCGGAGAGCGGCGAGCGAACGCCGGTGACAGTCGGCGCCGCG 21724 || || || | |||||||||||||||||| | |||||| || || Sbjct 101849 TAACCTGACATCGGCGAGCGAACGCCGGTCAGCGTCGGCCCCTCG 101893 Score = 313 bits (346), Expect = 6e-81 Identities = 445/627 (71%), Gaps = 38/627 (6%) Strand=Plus/Plus Query 14385 TTCAGGAGCTCGAACACGAGCATGTCCCATTTCGAGCCGGCGGAGCGGCCCATTTCCTGG 14444 ||||| || ||| |||||| |||||||| | ||| | || | |||||||| | Sbjct 92612 TTCAGCAGGCTGAAGACGAGCTGATCCCATTTGGCGCCCGTCGACTGCCCCATTTCGGTG 92671 Query 14445 AACAGCGGCGAGTAAATCCCGAGATTGTCGGTCTCGATATCGTCGCGATCGACGCCGATG 14504 |||| ||||| ||| || |||||||||||||||||||| |||||||| ||||||||||| Sbjct 92672 AACATCGGCGCGTAGATGCCGAGATTGTCGGTCTCGATGTCGTCGCGGTCGACGCCGATA 92731 Query 14505 GTGAGTTCCCAGGGCTTTTCGCGGATCGAATAGTCGGACTCGGTG-AGGTTCTGGATGGC 14563 ||||||||||| ||||||||| |||||||||||| || | || |||||||| | ||| Sbjct 92732 GTGAGTTCCCACGGCTTTTCGGTGATCGAATAGTCATGCT-GCTGCAGGTTCTGCACGGC 92790 Query 14564 GCGCGGGCCGATCCATTCGCGAACGTTCGGGATCTTGCCCATCCAGCCGTAGCGCTGCTC 14623 ||| || |||||||||||||| || || ||||||||||| | |||||| || |||| Sbjct 92791 GCGTGGACCGATCCATTCGCGGACATTGGGGATCTTGCCGAGCCAGCCATATTTCTGCGT 92850 Query 14624 CTTGGTGGAGGAAGGCACGACAGTCGTGAGGCGCAGATACTGCGAGGGTGCCTGATCCAG 14683 |||||| || ||||||||| | |||| || |||| || | | | | ||||| | || Sbjct 92851 CTTGGTCGACGAAGGCACGCCGGTCGAGATGCGCGAATGCAGGGTCGAGGCCTGGCCGAG 92910 Query 14684 TGCGCCCTGGAACGAGGTCTTGAAGCCAACGCGAAGCGCGTCGAGGTTTGCGGCGGTCAC 14743 || |||||||||||||||||||||| ||||| || |||||| || |||||| | | Sbjct 92911 GCCGGCCTGGAACGAGGTCTTGAAGCCGACGCGCAGGCTGTCGAGATTGGCGGCGTTGAT 92970 Query 14744 TTGCA-------TGATC-------------AGTCCTTTCAGAC--GGTGGC-----CGCG 14776 ||| ||||| || | |||| || || || | | Sbjct 92971 GAGCATGGACGTTGATCCTGTTGAAGCGAAAGCCTTTTCGAACCGGGAAGCGATCAGGTG 93030 Query 14777 AG---------GGTCATCGCGGAGTCGAGGCGCACCCAGACGCCGTTCGCGTCGATCATT 14827 || || | ||| ||||| ||||||||||||||| | |||||| | Sbjct 93031 AGATAGGCCCTGGCGAGCGCCTCGTCGAAACGCACCCAGACGCCGAGCTCGTCGACCCCG 93090 Query 14828 TCGACGGTGCCGGCTGCGGAGCGCGCGTTGGTGTTGGAGGTCTTCGCGACGGTTTCGTCA 14887 |||||| |||||| |||||||| ||||||| | |||||| || || || | ||| Sbjct 93091 TCGACGAAGCCGGCGATGGAGCGCGTGTTGGTGGCGCTGGTCTTGGCCACCGTCTGGTCG 93150 Query 14888 TCGACCGCGTAGCAAAGAGCGCCGATATCGGCCGCGGTGATCTCGTCGGCGCCCGACGAG 14947 ||||| || ||| | ||||||||||||| |||| ||| ||||||| | | ||| Sbjct 93151 TCGACGGCATAGGCCGGTCCGCCGATATCGGCGGCGGAGATGAGGTCGGCGGCGGCCGAA 93210 Query 14948 TTCGCAAAGCGGAAGACGCCCGGCCGG 14974 || || || || ||| ||||| |||| Sbjct 93211 TTGGCGAAACGATAGATGCCCGCCCGG 93237 Score = 219 bits (242), Expect = 1e-52 Identities = 591/881 (67%), Gaps = 36/881 (4%) Strand=Plus/Plus Query 35087 TGGGCCTTCTGGGCCGCCTTGACCTGCATCGCGATCG---CGACCGGGTCTTCCCCGGCA 35143 || ||||| || ||||||||||| | ||||| | |||| || || | ||| Sbjct 111231 TGCGCCTTTTGCGCCGCCTTGACGCGG---GCGATGGTGGCGACGGGATCGAGGCGGGCG 111287 Query 35144 AGATGCGGGCAGATCGCCTCGCCGAGGTAGCTTTCGCCGTCGAGGGCAAAGACCAAGGCG 35203 || | |||||||| ||||||||||||| |||| |||||| | | || | | | | Sbjct 111288 AGTTCCGGGCAGACCGCCTCGCCGAGGAAGCTGGTGCCGTCCGGTTCGAACAAAAGGATG 111347 Query 35204 CGGCCAAGGTCGGCGGGGTCCATGCGAACGAGAACGTCTTC--GCCAGGCCATG-CCGCG 35260 || || | |||||| ||||||||||| ||||| | | ||||||| ||| ||| Sbjct 111348 CGACCCATGTCGGCCGGGTCCATGCGGC--AGAACACCGTGCGGCCAGGC-ATGACCGAC 111404 Query 35261 CTTGTCTGGTAGTATTCGCCGTCGATTTTCAGGCCCTGCTTGGTGACCCGACGTACGCCA 35320 | | | || | |||||||||| | || ||||| ||| || | || Sbjct 111405 CCGGACAAATAATGCGCGCCGTCGATGCGGATACCGGTCTTGGCGACGGTGCGCAAACCG 111464 Query 35321 TCTTTGCCCGGCACTGGGGCGAGCAGCATATCGAGCGCC-CTGGGTTGGCTCAGGCGGCG 35379 || ||||| | || || || ||||| || ||||||||| | | ||| | | ||| || Sbjct 111465 TCCTTGCCGGCAACCGGCGCAAGCAGGATGTCGAGCGCCGCAAGATTGTCG-ATGCGCCG 111523 Query 35380 GATCTCTCCGGTCCAGCTGGCCGC--CTTTG--CGAAGGGTGACATCTTGAGCGCACTGT 35435 |||| |||| | || ||||| | | | || || | | | | |||| | | Sbjct 111524 GATCGGCCCGGAAAAACTCGCCGCGGCCTGGAACGGAGTGCGCCGGCC-GAGCCCTTCAT 111582 Query 35436 GTTCGCGATG-GGCGTAGATCGTCGAGGTCCAGTCCTCGCACCAGGTCTGGAATTCGGGG 35494 | ||| | ||| ||||| || | |||||| ||||||||||||||||| ||| | Sbjct 111583 GCG-GCGTCGAGGCATAGATTGTGTCCGCCCAGTCGTCGCACCAGGTCTGGAACTCGACG 111641 Query 35495 AGATCCATCTGCACGTCGAAGAGCTC--ATGGTCATCCATGCCGAGGCGGCGTGAAAATG 35552 | ||||| | ||| |||| || || |||| ||| |||||| || | | || | Sbjct 111642 ATGTCCATGTCGACGCCGAACAGTTCAGATGG--ATCGGCGCCGAGACGTTGCGCGAACG 111699 Query 35553 CCTTTCGGCCCTCAATGACTTTGCGATCGGCGACGGAGTGACCAATGAAGCCAGGGCACG 35612 |||| ||||| || | ||||| |||||||| || || || | ||| || |||| | Sbjct 111700 CCTTGCGGCCTTCGAGCTTCTTGCGGTCGGCGACCGAATGGCCGACGAAACC-CGGCAGG 111758 Query 35613 -TTGCGAGGTCGCGCTGGAACGTCCCGATAACGCGCTCGACATTGCCTTT---GCTTTTG 35668 ||||| ||||||||||| || ||||| |||| ||||| ||||||| || | Sbjct 111759 CCGGCGAGATCGCGCTGGAAGGTGCCGATGGCGCGTTCGACCATGCCTTTCGAGCGT--- 111815 Query 35669 GGGTCATAGGGTTTTGAGACTTCGTGCTCGATTCCGAGCGCAGCAAGAAGCCGGGCGATC 35728 || | || || || | ||| |||||| |||||| || | |||||| | || Sbjct 111816 GGCTGGTAAGGCGGCGACAGTTCCGTCTCGATGCCGAGCAGCGCGAAAAGCCGCTCCGTC 111875 Query 35729 GCATTGGCTTTGAAGTCGCTGCCGTTGTCGGTCTTGACGACACGCGGCACGCCCCAGTCG 35788 || | || |||| || ||||||||||||||||| ||||||||||||| || Sbjct 111876 GCCTGCGCGGTGAAATCCGAGCCGTTGTCGGTCTTGATCTTTTCCGGCACGCCCCAGGCG 111935 Query 35789 AGGATGCAGCTGCGCAGCAGCATCGCGACCGCTGCGGCCCTCGGCGTCTGGGTCACGAGG 35848 || | ||| |||||| || | |||| | ||||| | |||||| | ||| | | | Sbjct 111936 AGCAGGCATTTGCGCATCAAAAGGCCGACGCCGGCGGCGCGTGGCGTCGGTGTCGCCAAG 111995 Query 35849 ATTTTGGTGCGCCGCGACCAGATGTCGATCGCCATGTAGATCGAGTGCCGCCGCTTTCCT 35908 | ||| |||| || || | | ||||||||||| |||||||| || || | ||| || Sbjct 111996 ACCTTGATGCGGCGGGAAAAAACGTCGATCGCCAGATAGATCGAATGGCGGC-CTT--CT 112052 Query 35909 TTCAGCATCACGTCCGCGGGAGAGGCATCGATCTGCCAGAG 35949 |||||||| | ||| || || ||||| ||||||||||| || Sbjct 112053 TTCAGCATGATGTCGGCCGGCGAGGCGTCGATCTGCCAAAG 112093 Score = 161 bits (178), Expect = 3e-35 Identities = 137/169 (81%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 14097 TGCCAGAACCCGAAGCCGACATTGGCGCGGGCATCCGTGCCATAGAGGAATTCCTTGTTC 14156 |||||||| ||||||||||||||||||||||| || | ||| |||| |||||||||||| Sbjct 92331 TGCCAGAAGCCGAAGCCGACATTGGCGCGGGCGTCGGCGCCGTAGACAAATTCCTTGTTC 92390 Query 14157 ATGAAGACGTGGTCATCATCGAGCTTGGTCTTCGAGACGAACTGGAAGTCCCGGCGCTTC 14216 |||||||| | ||| || ||||||| ||| | ||| | ||| || ||||||||| Sbjct 92391 ATGAAGACATTGTCGTCGGTGAGCTTGTCCTTGGCCTGGAAGTCGAAATCGCGGCGCTTC 92450 Query 14217 TGCAGGATGATCGGCTTGAGCGCCCGCGTGGTGTCGAGCAGGAACCAGG 14265 |||||||||| |||||| ||||| |||| || ||| | |||||||||| Sbjct 92451 TGCAGGATGACCGGCTTCAGCGCGCGCGAGGCGTCCATGAGGAACCAGG 92499 Score = 125 bits (138), Expect = 2e-24 Identities = 194/277 (70%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 15770 TCTCCTGGTGAAGTGTGGTCAGACCACGGAAATTGGGCTTGTTGGTGAGCGAGGCCCGGG 15829 |||||||||||||||||||||| || || | || ||| |||| |||||||| || Sbjct 94090 TCTCCTGGTGAAGTGTGGTCAGCCCGCGCAGGTTCGGCCGGTTGACCAGCGAGGCGCGCA 94149 Query 15830 CGATCCCGATGATCGCCTTGCTGCCGTCATGAATGACCGCGGGGGAAATCCCCAGATAGG 15889 || || ||| | | | || | || || ||| || ||||| || |||||| Sbjct 94150 GAATGGCGGTGACGGTGCCGTCGGCGGCGTGCTGGATCGCCGGCGAAATGCCGCGATAGG 94209 Query 15890 CCCGGTCGGTCATCAGCGCCTTGCCGCGACGGGTCCACTCGACGCGCCCCCAGATCCCGT 15949 | ||| ||| | ||| |||| |||||| || || | ||||||| |||| Sbjct 94210 CGCGGCTGGTGACCAGGTGGCGGCCGTCCTCGGTCCATTCCACCCTGCCCCAGACGCCGT 94269 Query 15950 CAGCGCGGGCCTGAAGCTCGACGATATAGCCGCGCGCCGGGCTGGGCTCGCCGCGCGGGC 16009 | ||||||||||| | |||||||| ||||||||||||| ||| ||| |||| Sbjct 94270 CGGCGCGGGCCTGCAATTCGACGATCCAGCCGCGCGCCGGCGCAGGCCGGCCTTGCGGAG 94329 Query 16010 TGGCCAGATCGATTGCGTGGTTCTCGTCGATGGGGAG 16046 ||||||||| ||||||||||||||||||| || || Sbjct 94330 CAGCCAGATCGGTTGCGTGGTTCTCGTCGATCGGCAG 94366 Score = 122 bits (134), Expect = 2e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 28903 CCAGACCACGCCGCCATCGCGCCGCAGCCAGTCTTTGAGGGCCTCGACGGCCTTCGTCGC 28962 |||| | |||||||| || || | |||| | || || || |||| ||||| | ||| Sbjct 107054 CCAGTCGACGCCGCCTTCCCGTGCCGTCCAGGCCTTCAGCGCGTCGATCGCCTTGGCCGC 107113 Query 28963 CTGGAAGGGATCGCGCAGGAAGCGCACGTGATCGATCCCGGTCTGACGCTTCACGAAGGC 29022 | | |||||| |||||||| ||| ||||| |||||||| ||| |||||| | Sbjct 107114 GTCCACCGGATCGACGAGGAAGCGGGTGTGGTCGATACCGGTCTGGCGCCGGACGAAGTC 107173 Query 29023 GATCAGCGCCGCGTCCTCGCGATTGCGCACCAGGCCGAGGTTCCAGCCTGCGATCCAGAG 29082 || |||||| || || ||| | ||||||||||||||| | |||| | | ||||||||| Sbjct 107174 GAGCAGCGCGGCATCGGAGCGGTCGCGCACCAGGCCGAGATGCCAGGCCGAGATCCAGAG 107233 Query 29083 CGCCTGGAGCTTCTTCGCGTAAGGGCC 29109 ||||| ||||| |||| | ||||| Sbjct 107234 AGCCTGCAGCTTGCGCGCGAACGGGCC 107260 Score = 109 bits (120), Expect = 1e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 13856 TCAAGCGAGCCACGGCACCACGAGCAGTTCGGCCGTGCCTTTCCACGGGTTGGTCTCCCC 13915 ||| || ||||| ||||| || |||| ||||||||||||||||||| |||||||||| || Sbjct 92095 TCAGGCCAGCCAGGGCACGACCAGCAATTCGGCCGTGCCTTTCCACTGGTTGGTCTCGCC 92154 Query 13916 GCCGCTGGCATTTTCGCTGTTCAGGATCTTGCGGCCGGCTTCCTCGAGCGCAGGCGGCAC 13975 |||| | ||| ||| |||| || | ||||| | || | || ||||| |||||||| Sbjct 92155 GCCGGCGCCATAGTCGTTGTTGAGCAATTTGCGCGCCGCGCCTTCCAGCGCCGGCGGCAC 92214 Query 13976 GACCAGCAGG 13985 |||| |||| Sbjct 92215 CACCATCAGG 92224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126489376412530