Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020839.1
Length=39573
Score E
Sequences producing significant alignments: (Bits) Value
seq9622 531 1e-146
>seq9622
Length=151425
Score = 531 bits (588), Expect = 1e-146
Identities = 762/1065 (72%), Gaps = 23/1065 (2%)
Strand=Plus/Plus
Query 20668 CGTCAGATCCTCGGTCTTCGGGCGTGCGATCTTGATGCGCGGATAGCGTTTCTGAGGCCC 20727
|| ||||||||| | | ||| || ||||| | | |||||||||| || || |||||
Sbjct 100844 CGCCAGATCCTCCTTTTCCGGCCGGGCGATGGTTAGGCGCGGATAGGCCTTTTGCGGCCC 100903
Query 20728 ATATTCGAGCTGGATCCACGGGCGGATCAGATCCCTGTTGAGGATTGCTGCGAGAGCCAT 20787
|||||||| | ||||||| | | || |||||| | ||||||||| || ||||| ||
Sbjct 100904 GTATTCGAGGTCGATCCACAGCCTGACCAGATCGCGGTTGAGGATCGCGGCGAGTGCGCG 100963
Query 20788 CGCATCCGAGGTCTCGATATCTTCCTGGACAAGCCGATGCTCCTGGCTGACGGCATGCCC 20847
|| || | | |||||| || ||||| || || || || | |||||||| ||
Sbjct 100964 GGCGTCGGCGCGCTCGATGTCCTCCTGCACCTTGCGGTGTTCTTCCGACACGGCATGGCC 101023
Query 20848 ACCTGCGACGGCATCGGTCGTCGTTGTTTGGCCGAGAACCGCTTTCGAGATCTGCTGATC 20907
|| | || ||| |||||||| || || ||||| || ||||| || |||| ||| ||||
Sbjct 101024 GCCGGTGATGGCGTCGGTCGTGGTGGTCTGGCCAAGCACCGCCTTTGAGACCTGGCGATC 101083
Query 20908 GAGGTGATTGATCCGCTTCTCATAGAGATCCACCGAAGAGCCGATCGACTTGCTCTCGAC 20967
|| | || ||||| ||||| || || | ||| | ||||||||| || ||||||
Sbjct 101084 CAGCCAGTCGACGCGCTTTTCATAAAGGTCGATCGAGGCGCCGATCGATTTCGCCTCGAC 101143
Query 20968 GAAGTCGATGCTCATCGTCTCAGGGATGATCGCTGCGCAATCGCCAGCGATATTCGCAAC 21027
||| ||||| ||| || || |||||||| || |||||||| |||||||| || ||
Sbjct 101144 GAACTCGATCGCCATGCCGTCCGGCATGATCGCGGCACAATCGCCGGCGATATTGGCCAC 101203
Query 21028 GGCCCGGAAAAGCGTGTCCTTATCCTGCTCGCTCGCACCGGGTTGCCAT--TTGCCGATG 21085
|||||| | ||| || ||| || | ||| | || ||| ||||| |||||||||
Sbjct 101204 CGCCCGGTAGAGCTTGCGCTTGTCGTCGTCGGTGGCGTCGGC--GCCATATTTGCCGATG 101261
Query 21086 CGCAGGGGCTGGCCGTAGGTCTGGGTGAAGATCGCCCAGTCGCGCGCGGTAAACGCCTTG 21145
|| | |||||||| ||||||||||||||||||||||||||||| || || ||||||
Sbjct 101262 CGGATCGGCTGGCCATAGGTCTGGGTGAAGATCGCCCAGTCGCGATTGGCGAAGGCCTTG 101321
Query 21146 AACATCCAGCCCCAGGCAGCGACGCGGGCAAGACCCGAGCGCAGAAGGATGCCGGACTTG 21205
||||||||| ||||||| |||||||| || || || || |||| | | |||||||||
Sbjct 101322 AACATCCAGGCCCAGGCGGCGACGCGCGCCAGGCCGGAACGCATCGGCAGGCCGGACTTT 101381
Query 21206 GCCGGGATATCCGCGAAGATGAA-GCGGAAGGCTGGCAGCGGCACCTCGGCGCCGTTATC 21264
|| || ||||||||||||| | |||| |||||||||| ||| |||| ||
Sbjct 101382 GCTTTCATCACCGCGAAGATGAATTCACCAGGC-GGCAGCGGCAGTTCGCGGCCGCCCTC 101440
Query 21265 GTCGAGCAAAAGCGGCGTCGCGAGATCGCTCTTCTGGAAACGGAAGTGGCGCGGATCC-- 21322
||| |||| | ||||| | |||||| | | ||||||||| ||| |||||
Sbjct 101441 GTCCAGCATCAAGGGCGTGGTGAGATCATGCCTGGCGAAACGGAACCAGCGTTGATCCCA 101500
Query 21323 -CGCCAGATCAGTTTGTCCGGGAAATACTGTCCTTCCGAGGTGTTCCAGACGATCTCGGT 21381
|| || | |||| ||| | || |||||||| |||| ||| ||| |||
Sbjct 101501 GCGGTCGAGCCGTTT---CGGCTGCCATTGCCCTTCCGATGTGTCCCACTGGATGCGGGT 101557
Query 21382 GAAGCTGTAGCCCTTCGAGATACAGTCGAGGATGTGGAAGACCTCCTGCTGGAGCTCTTC 21441
|||| || ||||| || | ||| || | || |||| ||| | ||| || || ||
Sbjct 101558 GAAGGAATAACCCTTGCCGACGCTGTCCAGCACGTCGAAGGTCTCGTCCTGCAGTTCGTC 101617
Query 21442 GCGCTTGAGCCAGTCCCGAACCATGTCGGCGATCTTCACGTC--CTGCGGATCGTCCGAT 21499
||| | |||||| |||| | | || ||| || || | |||| | || |
Sbjct 101618 GCGGGTCAGCCAGGCCCGGATC------GCCTTCTCGACATCGGCGGCGG--CATCGCTT 101669
Query 21500 GCCGGCTCGACGGTGATATCGAGCTGGCTGACAGACCGTTTGCGCGTCCCGATCACGCCG 21559
|||| || || || |||||||| || ||||||||||| || ||||| ||||||
Sbjct 101670 GCCGCATCCACCGTCGCCTCGAGCTGCGCCACCGACCGTTTGCGGGTGCCGATGACGCCG 101729
Query 21560 AGGTAATGCGGATCGCGCTCCTCGATCACCTCGGCGAGATCGAGATAGCGCACCGGGTCG 21619
|| |||||| | || || ||||||||| |||||||| |||||||||||||||||||||
Sbjct 101730 AGATAATGCAG-TCACGTTCCTCGATCTGTTCGGCGAGCTCGAGATAGCGCACCGGGTCG 101788
Query 21620 CCATGGTCGGCTGCGCGCAGGATCTGCGCCAGGCGGAGCGGGTTCAGGCCGTCGCCGGGA 21679
|| |||||||| |||||||||| || || | || ||||||||| |||||| | |||
Sbjct 101789 CCCTGGTCGGCCTCGCGCAGGATGGCGGCGAGCCTGACCGGGTTCAGTCCGTCGGCCGGA 101848
Query 21680 TAGCCGGAGAGCGGCGAGCGAACGCCGGTGACAGTCGGCGCCGCG 21724
|| || || | |||||||||||||||||| | |||||| || ||
Sbjct 101849 TAACCTGACATCGGCGAGCGAACGCCGGTCAGCGTCGGCCCCTCG 101893
Score = 313 bits (346), Expect = 6e-81
Identities = 445/627 (71%), Gaps = 38/627 (6%)
Strand=Plus/Plus
Query 14385 TTCAGGAGCTCGAACACGAGCATGTCCCATTTCGAGCCGGCGGAGCGGCCCATTTCCTGG 14444
||||| || ||| |||||| |||||||| | ||| | || | |||||||| |
Sbjct 92612 TTCAGCAGGCTGAAGACGAGCTGATCCCATTTGGCGCCCGTCGACTGCCCCATTTCGGTG 92671
Query 14445 AACAGCGGCGAGTAAATCCCGAGATTGTCGGTCTCGATATCGTCGCGATCGACGCCGATG 14504
|||| ||||| ||| || |||||||||||||||||||| |||||||| |||||||||||
Sbjct 92672 AACATCGGCGCGTAGATGCCGAGATTGTCGGTCTCGATGTCGTCGCGGTCGACGCCGATA 92731
Query 14505 GTGAGTTCCCAGGGCTTTTCGCGGATCGAATAGTCGGACTCGGTG-AGGTTCTGGATGGC 14563
||||||||||| ||||||||| |||||||||||| || | || |||||||| | |||
Sbjct 92732 GTGAGTTCCCACGGCTTTTCGGTGATCGAATAGTCATGCT-GCTGCAGGTTCTGCACGGC 92790
Query 14564 GCGCGGGCCGATCCATTCGCGAACGTTCGGGATCTTGCCCATCCAGCCGTAGCGCTGCTC 14623
||| || |||||||||||||| || || ||||||||||| | |||||| || ||||
Sbjct 92791 GCGTGGACCGATCCATTCGCGGACATTGGGGATCTTGCCGAGCCAGCCATATTTCTGCGT 92850
Query 14624 CTTGGTGGAGGAAGGCACGACAGTCGTGAGGCGCAGATACTGCGAGGGTGCCTGATCCAG 14683
|||||| || ||||||||| | |||| || |||| || | | | | ||||| | ||
Sbjct 92851 CTTGGTCGACGAAGGCACGCCGGTCGAGATGCGCGAATGCAGGGTCGAGGCCTGGCCGAG 92910
Query 14684 TGCGCCCTGGAACGAGGTCTTGAAGCCAACGCGAAGCGCGTCGAGGTTTGCGGCGGTCAC 14743
|| |||||||||||||||||||||| ||||| || |||||| || |||||| | |
Sbjct 92911 GCCGGCCTGGAACGAGGTCTTGAAGCCGACGCGCAGGCTGTCGAGATTGGCGGCGTTGAT 92970
Query 14744 TTGCA-------TGATC-------------AGTCCTTTCAGAC--GGTGGC-----CGCG 14776
||| ||||| || | |||| || || || | |
Sbjct 92971 GAGCATGGACGTTGATCCTGTTGAAGCGAAAGCCTTTTCGAACCGGGAAGCGATCAGGTG 93030
Query 14777 AG---------GGTCATCGCGGAGTCGAGGCGCACCCAGACGCCGTTCGCGTCGATCATT 14827
|| || | ||| ||||| ||||||||||||||| | |||||| |
Sbjct 93031 AGATAGGCCCTGGCGAGCGCCTCGTCGAAACGCACCCAGACGCCGAGCTCGTCGACCCCG 93090
Query 14828 TCGACGGTGCCGGCTGCGGAGCGCGCGTTGGTGTTGGAGGTCTTCGCGACGGTTTCGTCA 14887
|||||| |||||| |||||||| ||||||| | |||||| || || || | |||
Sbjct 93091 TCGACGAAGCCGGCGATGGAGCGCGTGTTGGTGGCGCTGGTCTTGGCCACCGTCTGGTCG 93150
Query 14888 TCGACCGCGTAGCAAAGAGCGCCGATATCGGCCGCGGTGATCTCGTCGGCGCCCGACGAG 14947
||||| || ||| | ||||||||||||| |||| ||| ||||||| | | |||
Sbjct 93151 TCGACGGCATAGGCCGGTCCGCCGATATCGGCGGCGGAGATGAGGTCGGCGGCGGCCGAA 93210
Query 14948 TTCGCAAAGCGGAAGACGCCCGGCCGG 14974
|| || || || ||| ||||| ||||
Sbjct 93211 TTGGCGAAACGATAGATGCCCGCCCGG 93237
Score = 219 bits (242), Expect = 1e-52
Identities = 591/881 (67%), Gaps = 36/881 (4%)
Strand=Plus/Plus
Query 35087 TGGGCCTTCTGGGCCGCCTTGACCTGCATCGCGATCG---CGACCGGGTCTTCCCCGGCA 35143
|| ||||| || ||||||||||| | ||||| | |||| || || | |||
Sbjct 111231 TGCGCCTTTTGCGCCGCCTTGACGCGG---GCGATGGTGGCGACGGGATCGAGGCGGGCG 111287
Query 35144 AGATGCGGGCAGATCGCCTCGCCGAGGTAGCTTTCGCCGTCGAGGGCAAAGACCAAGGCG 35203
|| | |||||||| ||||||||||||| |||| |||||| | | || | | | |
Sbjct 111288 AGTTCCGGGCAGACCGCCTCGCCGAGGAAGCTGGTGCCGTCCGGTTCGAACAAAAGGATG 111347
Query 35204 CGGCCAAGGTCGGCGGGGTCCATGCGAACGAGAACGTCTTC--GCCAGGCCATG-CCGCG 35260
|| || | |||||| ||||||||||| ||||| | | ||||||| ||| |||
Sbjct 111348 CGACCCATGTCGGCCGGGTCCATGCGGC--AGAACACCGTGCGGCCAGGC-ATGACCGAC 111404
Query 35261 CTTGTCTGGTAGTATTCGCCGTCGATTTTCAGGCCCTGCTTGGTGACCCGACGTACGCCA 35320
| | | || | |||||||||| | || ||||| ||| || | ||
Sbjct 111405 CCGGACAAATAATGCGCGCCGTCGATGCGGATACCGGTCTTGGCGACGGTGCGCAAACCG 111464
Query 35321 TCTTTGCCCGGCACTGGGGCGAGCAGCATATCGAGCGCC-CTGGGTTGGCTCAGGCGGCG 35379
|| ||||| | || || || ||||| || ||||||||| | | ||| | | ||| ||
Sbjct 111465 TCCTTGCCGGCAACCGGCGCAAGCAGGATGTCGAGCGCCGCAAGATTGTCG-ATGCGCCG 111523
Query 35380 GATCTCTCCGGTCCAGCTGGCCGC--CTTTG--CGAAGGGTGACATCTTGAGCGCACTGT 35435
|||| |||| | || ||||| | | | || || | | | | |||| | |
Sbjct 111524 GATCGGCCCGGAAAAACTCGCCGCGGCCTGGAACGGAGTGCGCCGGCC-GAGCCCTTCAT 111582
Query 35436 GTTCGCGATG-GGCGTAGATCGTCGAGGTCCAGTCCTCGCACCAGGTCTGGAATTCGGGG 35494
| ||| | ||| ||||| || | |||||| ||||||||||||||||| ||| |
Sbjct 111583 GCG-GCGTCGAGGCATAGATTGTGTCCGCCCAGTCGTCGCACCAGGTCTGGAACTCGACG 111641
Query 35495 AGATCCATCTGCACGTCGAAGAGCTC--ATGGTCATCCATGCCGAGGCGGCGTGAAAATG 35552
| ||||| | ||| |||| || || |||| ||| |||||| || | | || |
Sbjct 111642 ATGTCCATGTCGACGCCGAACAGTTCAGATGG--ATCGGCGCCGAGACGTTGCGCGAACG 111699
Query 35553 CCTTTCGGCCCTCAATGACTTTGCGATCGGCGACGGAGTGACCAATGAAGCCAGGGCACG 35612
|||| ||||| || | ||||| |||||||| || || || | ||| || |||| |
Sbjct 111700 CCTTGCGGCCTTCGAGCTTCTTGCGGTCGGCGACCGAATGGCCGACGAAACC-CGGCAGG 111758
Query 35613 -TTGCGAGGTCGCGCTGGAACGTCCCGATAACGCGCTCGACATTGCCTTT---GCTTTTG 35668
||||| ||||||||||| || ||||| |||| ||||| ||||||| || |
Sbjct 111759 CCGGCGAGATCGCGCTGGAAGGTGCCGATGGCGCGTTCGACCATGCCTTTCGAGCGT--- 111815
Query 35669 GGGTCATAGGGTTTTGAGACTTCGTGCTCGATTCCGAGCGCAGCAAGAAGCCGGGCGATC 35728
|| | || || || | ||| |||||| |||||| || | |||||| | ||
Sbjct 111816 GGCTGGTAAGGCGGCGACAGTTCCGTCTCGATGCCGAGCAGCGCGAAAAGCCGCTCCGTC 111875
Query 35729 GCATTGGCTTTGAAGTCGCTGCCGTTGTCGGTCTTGACGACACGCGGCACGCCCCAGTCG 35788
|| | || |||| || ||||||||||||||||| ||||||||||||| ||
Sbjct 111876 GCCTGCGCGGTGAAATCCGAGCCGTTGTCGGTCTTGATCTTTTCCGGCACGCCCCAGGCG 111935
Query 35789 AGGATGCAGCTGCGCAGCAGCATCGCGACCGCTGCGGCCCTCGGCGTCTGGGTCACGAGG 35848
|| | ||| |||||| || | |||| | ||||| | |||||| | ||| | | |
Sbjct 111936 AGCAGGCATTTGCGCATCAAAAGGCCGACGCCGGCGGCGCGTGGCGTCGGTGTCGCCAAG 111995
Query 35849 ATTTTGGTGCGCCGCGACCAGATGTCGATCGCCATGTAGATCGAGTGCCGCCGCTTTCCT 35908
| ||| |||| || || | | ||||||||||| |||||||| || || | ||| ||
Sbjct 111996 ACCTTGATGCGGCGGGAAAAAACGTCGATCGCCAGATAGATCGAATGGCGGC-CTT--CT 112052
Query 35909 TTCAGCATCACGTCCGCGGGAGAGGCATCGATCTGCCAGAG 35949
|||||||| | ||| || || ||||| ||||||||||| ||
Sbjct 112053 TTCAGCATGATGTCGGCCGGCGAGGCGTCGATCTGCCAAAG 112093
Score = 161 bits (178), Expect = 3e-35
Identities = 137/169 (81%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 14097 TGCCAGAACCCGAAGCCGACATTGGCGCGGGCATCCGTGCCATAGAGGAATTCCTTGTTC 14156
|||||||| ||||||||||||||||||||||| || | ||| |||| ||||||||||||
Sbjct 92331 TGCCAGAAGCCGAAGCCGACATTGGCGCGGGCGTCGGCGCCGTAGACAAATTCCTTGTTC 92390
Query 14157 ATGAAGACGTGGTCATCATCGAGCTTGGTCTTCGAGACGAACTGGAAGTCCCGGCGCTTC 14216
|||||||| | ||| || ||||||| ||| | ||| | ||| || |||||||||
Sbjct 92391 ATGAAGACATTGTCGTCGGTGAGCTTGTCCTTGGCCTGGAAGTCGAAATCGCGGCGCTTC 92450
Query 14217 TGCAGGATGATCGGCTTGAGCGCCCGCGTGGTGTCGAGCAGGAACCAGG 14265
|||||||||| |||||| ||||| |||| || ||| | ||||||||||
Sbjct 92451 TGCAGGATGACCGGCTTCAGCGCGCGCGAGGCGTCCATGAGGAACCAGG 92499
Score = 125 bits (138), Expect = 2e-24
Identities = 194/277 (70%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 15770 TCTCCTGGTGAAGTGTGGTCAGACCACGGAAATTGGGCTTGTTGGTGAGCGAGGCCCGGG 15829
|||||||||||||||||||||| || || | || ||| |||| |||||||| ||
Sbjct 94090 TCTCCTGGTGAAGTGTGGTCAGCCCGCGCAGGTTCGGCCGGTTGACCAGCGAGGCGCGCA 94149
Query 15830 CGATCCCGATGATCGCCTTGCTGCCGTCATGAATGACCGCGGGGGAAATCCCCAGATAGG 15889
|| || ||| | | | || | || || ||| || ||||| || ||||||
Sbjct 94150 GAATGGCGGTGACGGTGCCGTCGGCGGCGTGCTGGATCGCCGGCGAAATGCCGCGATAGG 94209
Query 15890 CCCGGTCGGTCATCAGCGCCTTGCCGCGACGGGTCCACTCGACGCGCCCCCAGATCCCGT 15949
| ||| ||| | ||| |||| |||||| || || | ||||||| ||||
Sbjct 94210 CGCGGCTGGTGACCAGGTGGCGGCCGTCCTCGGTCCATTCCACCCTGCCCCAGACGCCGT 94269
Query 15950 CAGCGCGGGCCTGAAGCTCGACGATATAGCCGCGCGCCGGGCTGGGCTCGCCGCGCGGGC 16009
| ||||||||||| | |||||||| ||||||||||||| ||| ||| ||||
Sbjct 94270 CGGCGCGGGCCTGCAATTCGACGATCCAGCCGCGCGCCGGCGCAGGCCGGCCTTGCGGAG 94329
Query 16010 TGGCCAGATCGATTGCGTGGTTCTCGTCGATGGGGAG 16046
||||||||| ||||||||||||||||||| || ||
Sbjct 94330 CAGCCAGATCGGTTGCGTGGTTCTCGTCGATCGGCAG 94366
Score = 122 bits (134), Expect = 2e-23
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 28903 CCAGACCACGCCGCCATCGCGCCGCAGCCAGTCTTTGAGGGCCTCGACGGCCTTCGTCGC 28962
|||| | |||||||| || || | |||| | || || || |||| ||||| | |||
Sbjct 107054 CCAGTCGACGCCGCCTTCCCGTGCCGTCCAGGCCTTCAGCGCGTCGATCGCCTTGGCCGC 107113
Query 28963 CTGGAAGGGATCGCGCAGGAAGCGCACGTGATCGATCCCGGTCTGACGCTTCACGAAGGC 29022
| | |||||| |||||||| ||| ||||| |||||||| ||| |||||| |
Sbjct 107114 GTCCACCGGATCGACGAGGAAGCGGGTGTGGTCGATACCGGTCTGGCGCCGGACGAAGTC 107173
Query 29023 GATCAGCGCCGCGTCCTCGCGATTGCGCACCAGGCCGAGGTTCCAGCCTGCGATCCAGAG 29082
|| |||||| || || ||| | ||||||||||||||| | |||| | | |||||||||
Sbjct 107174 GAGCAGCGCGGCATCGGAGCGGTCGCGCACCAGGCCGAGATGCCAGGCCGAGATCCAGAG 107233
Query 29083 CGCCTGGAGCTTCTTCGCGTAAGGGCC 29109
||||| ||||| |||| | |||||
Sbjct 107234 AGCCTGCAGCTTGCGCGCGAACGGGCC 107260
Score = 109 bits (120), Expect = 1e-19
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 13856 TCAAGCGAGCCACGGCACCACGAGCAGTTCGGCCGTGCCTTTCCACGGGTTGGTCTCCCC 13915
||| || ||||| ||||| || |||| ||||||||||||||||||| |||||||||| ||
Sbjct 92095 TCAGGCCAGCCAGGGCACGACCAGCAATTCGGCCGTGCCTTTCCACTGGTTGGTCTCGCC 92154
Query 13916 GCCGCTGGCATTTTCGCTGTTCAGGATCTTGCGGCCGGCTTCCTCGAGCGCAGGCGGCAC 13975
|||| | ||| ||| |||| || | ||||| | || | || ||||| ||||||||
Sbjct 92155 GCCGGCGCCATAGTCGTTGTTGAGCAATTTGCGCGCCGCGCCTTCCAGCGCCGGCGGCAC 92214
Query 13976 GACCAGCAGG 13985
|||| ||||
Sbjct 92215 CACCATCAGG 92224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 126489376412530
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