Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020840.1 Length=38987 Score E Sequences producing significant alignments: (Bits) Value seq11405 223 9e-54 >seq11405 Length=110570 Score = 223 bits (246), Expect = 9e-54 Identities = 369/525 (70%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 11370 ATTGAATGGACTGACCACACGTTTAACCCCTGGGAGGGCTGCCAGAAGGTGGGACCCGGG 11429 || |||||||| ||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct 75982 ATCGAATGGACCGACCACACGTTCAACCCCTGGGAAGGCTGCCAGAAGGTGGGCCCGGGC 75923 Query 11430 TGTGACAATTGCTATGCCGAGGCGCGCAATGCCCGTTTCGGTGGGGGCACGGCGCCAAAC 11489 |||||| | |||||||||||| ||||||||||| |||| || ||| |||| ||| Sbjct 75922 TGTGACCACTGCTATGCCGAGAACCGCAATGCCCGCTTCGCCGGCGGCCAGGCGATCAAC 75863 Query 11490 TGGGGACCAGGAGCCCCGCGCCGTCTCACC--TCCAAGGCCAATTGGCGCGCACCGCTCA 11547 ||||| ||||| || || ||||| | |||| | || ||| ||| | || || Sbjct 75862 TGGGGCCCAGGCGCACCCCGCCGCCGCACCAGTGTCAG--CAACTGGAACCTGCCCCTGC 75805 Query 11548 AATGG---GCCAAGCGCGCGGCCGAATTCCAGGCAGAGCACGGACGGCGCCAGCGCGTCT 11604 ||| ||| || || ||| ||||||||| ||||||| || ||||||||||| | Sbjct 75804 GCTGGAACGCCCAGGCCGAGGC---ATTCCAGGCCCAGCACGGCCGCCGCCAGCGCGTGT 75748 Query 11605 TTTGCGCCAGCCTGGCTGATGTGTTTGACAATGCCGTGGACCCGGCCTGGCGCGCTGACC 11664 | ||||| ||||| ||||| || || || || || || || | ||||||| ||||| Sbjct 75747 TCTGCGCGAGCCTCGCTGACGTTTTCGATAACGCAGTCAGCCGTGAATGGCGCGATGACC 75688 Query 11665 TATTCGAGCTCATCAGGCAGACCCCAGAGCTGGACTGGCTCCTCCTCACAAAGCGCGTGG 11724 | | || ||| | | ||| | || || ||||||||||||||||| || | | | Sbjct 75687 TGGCAGCCCTGATCCTGGACACCGCGGACCTTGACTGGCTCCTCCTCACCAAAAGGATTG 75628 Query 11725 GCAATGTGTCCAGCATGCT--GCCAGAGG--ACT-GGGGGCACGGCTGGGACCACGTCTG 11779 | || | | |||||| || | | | || | ||| || | | || ||||||| Sbjct 75627 GGAACGCGGGTGCCATGCTAGGCGAAATGTTCCTCGACGGCCCGCCCGCGA--ACGTCTG 75570 Query 11780 GCTGGGCATCACCGTAGTGAACCAGGATGAAGCTGACCGCGACATCCCTAAGCTGGAGGC 11839 | |||| || || || ||||||| || || ||||| ||||| | |||||| Sbjct 75569 GTTGGGTGCGACGGTTGTCAACCAGGCCGAGGCCGACCGGGACATTCTCAAGCTGCTCCG 75510 Query 11840 CACACCGGCCGCGGTGCGCTTCCTGAGCGTGGAGCCCATGCTGGG 11884 || || || | ||||||||| || |||||||| ||||||| Sbjct 75509 CATCCCCGCGTCCGTGCGCTTCTTGTCGATGGAGCCCCTGCTGGG 75465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124614511746342