Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020840.1
Length=38987
Score E
Sequences producing significant alignments: (Bits) Value
seq11405 223 9e-54
>seq11405
Length=110570
Score = 223 bits (246), Expect = 9e-54
Identities = 369/525 (70%), Gaps = 17/525 (3%)
Strand=Plus/Minus
Query 11370 ATTGAATGGACTGACCACACGTTTAACCCCTGGGAGGGCTGCCAGAAGGTGGGACCCGGG 11429
|| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 75982 ATCGAATGGACCGACCACACGTTCAACCCCTGGGAAGGCTGCCAGAAGGTGGGCCCGGGC 75923
Query 11430 TGTGACAATTGCTATGCCGAGGCGCGCAATGCCCGTTTCGGTGGGGGCACGGCGCCAAAC 11489
|||||| | |||||||||||| ||||||||||| |||| || ||| |||| |||
Sbjct 75922 TGTGACCACTGCTATGCCGAGAACCGCAATGCCCGCTTCGCCGGCGGCCAGGCGATCAAC 75863
Query 11490 TGGGGACCAGGAGCCCCGCGCCGTCTCACC--TCCAAGGCCAATTGGCGCGCACCGCTCA 11547
||||| ||||| || || ||||| | |||| | || ||| ||| | || ||
Sbjct 75862 TGGGGCCCAGGCGCACCCCGCCGCCGCACCAGTGTCAG--CAACTGGAACCTGCCCCTGC 75805
Query 11548 AATGG---GCCAAGCGCGCGGCCGAATTCCAGGCAGAGCACGGACGGCGCCAGCGCGTCT 11604
||| ||| || || ||| ||||||||| ||||||| || ||||||||||| |
Sbjct 75804 GCTGGAACGCCCAGGCCGAGGC---ATTCCAGGCCCAGCACGGCCGCCGCCAGCGCGTGT 75748
Query 11605 TTTGCGCCAGCCTGGCTGATGTGTTTGACAATGCCGTGGACCCGGCCTGGCGCGCTGACC 11664
| ||||| ||||| ||||| || || || || || || || | ||||||| |||||
Sbjct 75747 TCTGCGCGAGCCTCGCTGACGTTTTCGATAACGCAGTCAGCCGTGAATGGCGCGATGACC 75688
Query 11665 TATTCGAGCTCATCAGGCAGACCCCAGAGCTGGACTGGCTCCTCCTCACAAAGCGCGTGG 11724
| | || ||| | | ||| | || || ||||||||||||||||| || | | |
Sbjct 75687 TGGCAGCCCTGATCCTGGACACCGCGGACCTTGACTGGCTCCTCCTCACCAAAAGGATTG 75628
Query 11725 GCAATGTGTCCAGCATGCT--GCCAGAGG--ACT-GGGGGCACGGCTGGGACCACGTCTG 11779
| || | | |||||| || | | | || | ||| || | | || |||||||
Sbjct 75627 GGAACGCGGGTGCCATGCTAGGCGAAATGTTCCTCGACGGCCCGCCCGCGA--ACGTCTG 75570
Query 11780 GCTGGGCATCACCGTAGTGAACCAGGATGAAGCTGACCGCGACATCCCTAAGCTGGAGGC 11839
| |||| || || || ||||||| || || ||||| ||||| | ||||||
Sbjct 75569 GTTGGGTGCGACGGTTGTCAACCAGGCCGAGGCCGACCGGGACATTCTCAAGCTGCTCCG 75510
Query 11840 CACACCGGCCGCGGTGCGCTTCCTGAGCGTGGAGCCCATGCTGGG 11884
|| || || | ||||||||| || |||||||| |||||||
Sbjct 75509 CATCCCCGCGTCCGTGCGCTTCTTGTCGATGGAGCCCCTGCTGGG 75465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124614511746342
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |