Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020841.1 Length=40803 Score E Sequences producing significant alignments: (Bits) Value seq12839 120 8e-23 seq8939 80.6 7e-11 >seq12839 Length=204338 Score = 120 bits (132), Expect = 8e-23 Identities = 183/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 13049 TGTCCAGTTATCGCACTGTCACAGCTTAACCGTAGCTTAGAGAGCCGACCAAACAAACGG 13108 || || ||||| ||||||||||||||||||||| | || | ||| ||||| ||||| Sbjct 81900 TGCCCTGTTATTGCACTGTCACAGCTTAACCGTTCTCTGGAAAACCGTCCAAATAAACGT 81841 Query 13109 CCCATCATGAGCGACCTAAAAGAGTCAGGGGCCATTGAGGAAAACGCTGACGTGATTATG 13168 || | ||| |||| || || ||||| || || ||| | | || || | |||||| Sbjct 81840 CCGGTAATGTCCGACTTACGTGAATCAGGTGCAATCGAGCAGGATGCCGATTTAATTATG 81781 Query 13169 TTCCTGTACCGCGATGAGGTTTATAACGAAAACTCGGACCAAAAAGGTATTGCTG-AGGT 13227 || | ||||| ||||||||||||||| || | ||| | || ||| | |||| | | Sbjct 81780 TTTATTTACCGTGATGAGGTTTATAACAAAGAGTCGAAAGAAGCAGGCACAGCTGAAATT 81721 Query 13228 AGGAGTGGCTAAAAACCGTCAAGGGCCAGTTGGGACCGTAAGACTAGCGTTTGAGGGTGA 13287 | | ||| |||| | ||| | || || | ||||| || | |||| ||||| ||| | Sbjct 81720 ATCATTGG-TAAACAACGTAATGGCCCGATCGGGACTGTGCGTTTAGCCTTTGAAGGTCA 81662 Query 13288 ATACAGCCGCTTTAGCAA 13305 ||||| |||||||| || Sbjct 81661 ATACACGCGCTTTAGTAA 81644 >seq8939 Length=223461 Score = 80.6 bits (88), Expect = 7e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 5147 CCCTCGATATAAACTTTTGAGCCTTTACGTAAATACTGTGCTGCAATCTCACCAAGACGG 5206 || || |||||||||||||||||||||||||||||||| |||||||||||| | |||| Sbjct 55188 CCTTCAATATAAACTTTTGAGCCTTTACGTAAATACTGCTGTGCAATCTCACCTAAACGG 55247 Query 5207 TT 5208 || Sbjct 55248 TT 55249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130424672554870