Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020841.1
Length=40803
Score E
Sequences producing significant alignments: (Bits) Value
seq12839 120 8e-23
seq8939 80.6 7e-11
>seq12839
Length=204338
Score = 120 bits (132), Expect = 8e-23
Identities = 183/258 (71%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 13049 TGTCCAGTTATCGCACTGTCACAGCTTAACCGTAGCTTAGAGAGCCGACCAAACAAACGG 13108
|| || ||||| ||||||||||||||||||||| | || | ||| ||||| |||||
Sbjct 81900 TGCCCTGTTATTGCACTGTCACAGCTTAACCGTTCTCTGGAAAACCGTCCAAATAAACGT 81841
Query 13109 CCCATCATGAGCGACCTAAAAGAGTCAGGGGCCATTGAGGAAAACGCTGACGTGATTATG 13168
|| | ||| |||| || || ||||| || || ||| | | || || | ||||||
Sbjct 81840 CCGGTAATGTCCGACTTACGTGAATCAGGTGCAATCGAGCAGGATGCCGATTTAATTATG 81781
Query 13169 TTCCTGTACCGCGATGAGGTTTATAACGAAAACTCGGACCAAAAAGGTATTGCTG-AGGT 13227
|| | ||||| ||||||||||||||| || | ||| | || ||| | |||| | |
Sbjct 81780 TTTATTTACCGTGATGAGGTTTATAACAAAGAGTCGAAAGAAGCAGGCACAGCTGAAATT 81721
Query 13228 AGGAGTGGCTAAAAACCGTCAAGGGCCAGTTGGGACCGTAAGACTAGCGTTTGAGGGTGA 13287
| | ||| |||| | ||| | || || | ||||| || | |||| ||||| ||| |
Sbjct 81720 ATCATTGG-TAAACAACGTAATGGCCCGATCGGGACTGTGCGTTTAGCCTTTGAAGGTCA 81662
Query 13288 ATACAGCCGCTTTAGCAA 13305
||||| |||||||| ||
Sbjct 81661 ATACACGCGCTTTAGTAA 81644
>seq8939
Length=223461
Score = 80.6 bits (88), Expect = 7e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 5147 CCCTCGATATAAACTTTTGAGCCTTTACGTAAATACTGTGCTGCAATCTCACCAAGACGG 5206
|| || |||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 55188 CCTTCAATATAAACTTTTGAGCCTTTACGTAAATACTGCTGTGCAATCTCACCTAAACGG 55247
Query 5207 TT 5208
||
Sbjct 55248 TT 55249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130424672554870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |