Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2172 149 8e-31 seq9020 95.1 2e-14 >seq2172 Length=1301 Score = 149 bits (164), Expect = 8e-31 Identities = 376/571 (66%), Gaps = 8/571 (1%) Strand=Plus/Plus Query 47757 CTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTC 47816 ||| || |||| ||| || |||| || | || ||||| || ||| | || || || | Sbjct 464 CTCGACGAACTCACGAACCGAATGCTGCTCGCCGGTGGCGATCACATAGTCCTCGGGGGC 523 Query 47817 TTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACG 47876 || || || ||||| | |||| ||||||||| || | ||| || |||||||| || Sbjct 524 GTCCTGCTGCAGCATCAGCCACTGCATCTCGACATAGTCGCGGGCGTGGCCCCAGTCGCG 583 Query 47877 AAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT-- 47934 | |||| || || || ||||| | ||| ||| || ||| ||| | Sbjct 584 GCGGGCATTGAGGTTGCCGAGATAGAGCTTGTCCTGCAGGCC----GAGCTTGATGCGCG 639 Query 47935 --AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGAT 47992 | || | || ||||| || || || || || || || || || ||||| || | Sbjct 640 CCAGCGCCCGCGTGATCTTGCGCGTCACGAAGGTCTCGCCGCGCACCGGGGATTCGTGGT 699 Query 47993 TAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCC 48052 | || || || || | |||||||| || ||||| | |||||||||||| |||| Sbjct 700 TGAACAGGATGCCGTTGCAGGCATAGATGCCGTAGGCCTCACGATAGTTCACCGTGATCC 759 Query 48053 AGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTG 48112 |||| | ||||| || || || |||| || || || |||||||| || || ||||| Sbjct 760 AGTAGGCGTAGAGCTTGGCGACCGCATAGGGCGAGCGCGGATAGAACGGCGTCGTCTCCT 819 Query 48113 TCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAA 48172 |||| || ||| ||||| || || ||||| ||| || || ||||||| || Sbjct 820 TCTGCGGCACCTCCTGCACGAGGCCGTACAGTTCGGAGGTCGACGCCTGATAGAACCGCG 879 Query 48173 CCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCAT 48232 | | |||| | | || | |||| ||||| |||| | ||| | || | |||| Sbjct 880 TCTTGCGCTCCAGCCCGAGAATCCGGATCGCCTCCAGCAGGCGCAGCGGTCCCAGCGCAT 939 Query 48233 CTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAA 48292 | | | | || || || ||| ||| ||||| ||| ||||| ||||| ||| | | Sbjct 940 CGGAATTGGCGGTGTATTCCGGCTCCTCGAACGACACCGCGACATGGCTCTGCGCCGCGA 999 Query 48293 GATTATAAATCTCATCTGGTTGAACCTGCTG 48323 |||| || ||||| || || || ||||| || Sbjct 1000 GATTGTAGATCTCGTCCGGCTGCACCTGGTG 1030 >seq9020 Length=152994 Score = 95.1 bits (104), Expect = 2e-14 Identities = 80/96 (83%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGG-AGGCTTTCACCT-CGCTGGTTTTCAAGACCA 53541 ||||| |||||| ||||||||| ||||| |||||| ||||| || ||||||||||||| Sbjct 45683 GCGGACAGGGTGGGATTCGAACCCACGGTAGGCTTCCACCTACGGCGGTTTTCAAGACCG 45624 Query 53542 GAGCCATAAACCACTCGACCACCTCTCCAGGTTTAA 53577 ||| ||||||||||| |||||| |||| ||| || Sbjct 45623 CTGCCTTAAACCACTCGGCCACCTGTCCATGTTGAA 45588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665369128997880