Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq2172 149 8e-31
seq9020 95.1 2e-14
>seq2172
Length=1301
Score = 149 bits (164), Expect = 8e-31
Identities = 376/571 (66%), Gaps = 8/571 (1%)
Strand=Plus/Plus
Query 47757 CTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTC 47816
||| || |||| ||| || |||| || | || ||||| || ||| | || || || |
Sbjct 464 CTCGACGAACTCACGAACCGAATGCTGCTCGCCGGTGGCGATCACATAGTCCTCGGGGGC 523
Query 47817 TTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACG 47876
|| || || ||||| | |||| ||||||||| || | ||| || |||||||| ||
Sbjct 524 GTCCTGCTGCAGCATCAGCCACTGCATCTCGACATAGTCGCGGGCGTGGCCCCAGTCGCG 583
Query 47877 AAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT-- 47934
| |||| || || || ||||| | ||| ||| || ||| ||| |
Sbjct 584 GCGGGCATTGAGGTTGCCGAGATAGAGCTTGTCCTGCAGGCC----GAGCTTGATGCGCG 639
Query 47935 --AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGAT 47992
| || | || ||||| || || || || || || || || || ||||| || |
Sbjct 640 CCAGCGCCCGCGTGATCTTGCGCGTCACGAAGGTCTCGCCGCGCACCGGGGATTCGTGGT 699
Query 47993 TAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCC 48052
| || || || || | |||||||| || ||||| | |||||||||||| ||||
Sbjct 700 TGAACAGGATGCCGTTGCAGGCATAGATGCCGTAGGCCTCACGATAGTTCACCGTGATCC 759
Query 48053 AGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTG 48112
|||| | ||||| || || || |||| || || || |||||||| || || |||||
Sbjct 760 AGTAGGCGTAGAGCTTGGCGACCGCATAGGGCGAGCGCGGATAGAACGGCGTCGTCTCCT 819
Query 48113 TCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAA 48172
|||| || ||| ||||| || || ||||| ||| || || ||||||| ||
Sbjct 820 TCTGCGGCACCTCCTGCACGAGGCCGTACAGTTCGGAGGTCGACGCCTGATAGAACCGCG 879
Query 48173 CCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCAT 48232
| | |||| | | || | |||| ||||| |||| | ||| | || | ||||
Sbjct 880 TCTTGCGCTCCAGCCCGAGAATCCGGATCGCCTCCAGCAGGCGCAGCGGTCCCAGCGCAT 939
Query 48233 CTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAA 48292
| | | | || || || ||| ||| ||||| ||| ||||| ||||| ||| | |
Sbjct 940 CGGAATTGGCGGTGTATTCCGGCTCCTCGAACGACACCGCGACATGGCTCTGCGCCGCGA 999
Query 48293 GATTATAAATCTCATCTGGTTGAACCTGCTG 48323
|||| || ||||| || || || ||||| ||
Sbjct 1000 GATTGTAGATCTCGTCCGGCTGCACCTGGTG 1030
>seq9020
Length=152994
Score = 95.1 bits (104), Expect = 2e-14
Identities = 80/96 (83%), Gaps = 2/96 (2%)
Strand=Plus/Minus
Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGG-AGGCTTTCACCT-CGCTGGTTTTCAAGACCA 53541
||||| |||||| ||||||||| ||||| |||||| ||||| || |||||||||||||
Sbjct 45683 GCGGACAGGGTGGGATTCGAACCCACGGTAGGCTTCCACCTACGGCGGTTTTCAAGACCG 45624
Query 53542 GAGCCATAAACCACTCGACCACCTCTCCAGGTTTAA 53577
||| ||||||||||| |||||| |||| ||| ||
Sbjct 45623 CTGCCTTAAACCACTCGGCCACCTGTCCATGTTGAA 45588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665369128997880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |