Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020871.1
Length=133057
Score E
Sequences producing significant alignments: (Bits) Value
seq10153 275 5e-69
>seq10153
Length=9971
Score = 275 bits (304), Expect = 5e-69
Identities = 642/963 (67%), Gaps = 4/963 (0%)
Strand=Plus/Minus
Query 89419 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 89478
|| || ||| | ||||||||||| |||| ||| ||||| |||||||| || ||||| |||
Sbjct 7677 AGCGGCATCCTCAACTGGAACGACATTCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 7618
Query 89479 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGACATGAAGAGCGATGCCAAGCAGTAC 89538
| | || || | |||| | || || ||||| ||||||||| ||||||| ||||||
Sbjct 7617 CTGTCGACCAACTTCTGGATTCCCGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 7558
Query 89539 AACCACTTATCCGAAGAAGAGAAATATGCGTTTGATTCCATTATCGGACTTTTAGCTACA 89598
| | | || | || || | || | || || || ||||| || | || ||
Sbjct 7557 GGCGAGCTCAACGCACGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTCGCCACG 7498
Query 89599 CTTGACTCACCCCAAACACGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCCTCT 89658
|| |||||||| || || || || || || || | || ||||| | | || | |
Sbjct 7497 CTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATTACCGACCCAGCG 7438
Query 89659 GTTCATGCTATTACAGCTATCATTGCACAACAAGAGGCTATTCATAATGAGAGTTATTCT 89718
| ||||| | | |||| ||||| | || || || | || || || ||||| ||
Sbjct 7437 GCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGC 7378
Query 89719 TATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGA 89778
|| || || || || || || || | | | ||||| || | || ||| || |
Sbjct 7377 TACGTGCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCCGC 7318
Query 89779 ACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATG 89838
|| ||||| || || || || || || ||||| || ||| | |||||||| ||||||
Sbjct 7317 ACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTATGACGACTTCATG 7258
Query 89839 AATAACAAAACACCTGAAAATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAGGGT 89898
| || || | || | || | || | | | ||||| || ||| | || ||
Sbjct 7257 CGCGAGAAGACCGCCGAGACCCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAGGC 7198
Query 89899 ATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATGACG 89958
|| || ||||| |||||| || |||||||| ||| | || || || ||| ||||
Sbjct 7197 ATCAACTTCTATTCCGGTTTCGCCTACTTCTACAACATGGTGCGGCAGAACCGCATGAAC 7138
Query 89959 GGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTATT 90018
|| || || || ||||| |||||||| || || || ||| | || ||| | ||||| ||
Sbjct 7137 GGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCATC 7078
Query 90019 TCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAAT 90078
||| | || | || || | || || |||||||| || || || | || || |
Sbjct 7077 AGCGAGTTGATCCGCGCCATCATCGGCGAGAACCCTGAGCTGCAGACCAACGAGCTGACC 7018
Query 90079 GACTACGTGTATGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAGTGA 90137
| ||||||| | || || ||| || | ||||| || | || |||||| ||
Sbjct 7017 GCCTACGTGCACCAATCATTCGAACACGCGATCGAGCTGGAG-ACGCAGTGGTCGTCGGA 6959
Query 90138 GGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAGATGTTAGACTATGTAAAATATCG 90197
||| || | || || || || || || ||||| |||||| | ||| || || || ||
Sbjct 6958 GGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTACCG 6899
Query 90198 TGCTAATAAAATGTTAGGGATGCTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGAAA 90256
|| || || ||| || ||||| || | | | |||| || | ||| || || |
Sbjct 6898 CGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACA 6840
Query 90257 ATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTTTT 90316
| ||| | ||||| || || |||||||| ||||| || ||||| || |||||||| |
Sbjct 6839 ACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACCGAAACCAAGACCGACTTCT 6780
Query 90317 TCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTTAT 90376
|||| ||||| || | ||||||||||| || ||| | ||||| || ||||||||| | |
Sbjct 6779 TCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGATGACCTCT 6720
Query 90377 GAG 90379
|||
Sbjct 6719 GAG 6717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425579478395582
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |