Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020871.1 Length=133057 Score E Sequences producing significant alignments: (Bits) Value seq10153 275 5e-69 >seq10153 Length=9971 Score = 275 bits (304), Expect = 5e-69 Identities = 642/963 (67%), Gaps = 4/963 (0%) Strand=Plus/Minus Query 89419 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 89478 || || ||| | ||||||||||| |||| ||| ||||| |||||||| || ||||| ||| Sbjct 7677 AGCGGCATCCTCAACTGGAACGACATTCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 7618 Query 89479 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGACATGAAGAGCGATGCCAAGCAGTAC 89538 | | || || | |||| | || || ||||| ||||||||| ||||||| |||||| Sbjct 7617 CTGTCGACCAACTTCTGGATTCCCGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 7558 Query 89539 AACCACTTATCCGAAGAAGAGAAATATGCGTTTGATTCCATTATCGGACTTTTAGCTACA 89598 | | | || | || || | || | || || || ||||| || | || || Sbjct 7557 GGCGAGCTCAACGCACGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTCGCCACG 7498 Query 89599 CTTGACTCACCCCAAACACGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCCTCT 89658 || |||||||| || || || || || || || | || ||||| | | || | | Sbjct 7497 CTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATTACCGACCCAGCG 7438 Query 89659 GTTCATGCTATTACAGCTATCATTGCACAACAAGAGGCTATTCATAATGAGAGTTATTCT 89718 | ||||| | | |||| ||||| | || || || | || || || ||||| || Sbjct 7437 GCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGC 7378 Query 89719 TATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGA 89778 || || || || || || || || | | | ||||| || | || ||| || | Sbjct 7377 TACGTGCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCCGC 7318 Query 89779 ACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATG 89838 || ||||| || || || || || || ||||| || ||| | |||||||| |||||| Sbjct 7317 ACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTATGACGACTTCATG 7258 Query 89839 AATAACAAAACACCTGAAAATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAGGGT 89898 | || || | || | || | || | | | ||||| || ||| | || || Sbjct 7257 CGCGAGAAGACCGCCGAGACCCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAGGC 7198 Query 89899 ATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATGACG 89958 || || ||||| |||||| || |||||||| ||| | || || || ||| |||| Sbjct 7197 ATCAACTTCTATTCCGGTTTCGCCTACTTCTACAACATGGTGCGGCAGAACCGCATGAAC 7138 Query 89959 GGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTATT 90018 || || || || ||||| |||||||| || || || ||| | || ||| | ||||| || Sbjct 7137 GGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCATC 7078 Query 90019 TCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAAT 90078 ||| | || | || || | || || |||||||| || || || | || || | Sbjct 7077 AGCGAGTTGATCCGCGCCATCATCGGCGAGAACCCTGAGCTGCAGACCAACGAGCTGACC 7018 Query 90079 GACTACGTGTATGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAGTGA 90137 | ||||||| | || || ||| || | ||||| || | || |||||| || Sbjct 7017 GCCTACGTGCACCAATCATTCGAACACGCGATCGAGCTGGAG-ACGCAGTGGTCGTCGGA 6959 Query 90138 GGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAGATGTTAGACTATGTAAAATATCG 90197 ||| || | || || || || || || ||||| |||||| | ||| || || || || Sbjct 6958 GGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTACCG 6899 Query 90198 TGCTAATAAAATGTTAGGGATGCTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGAAA 90256 || || || ||| || ||||| || | | | |||| || | ||| || || | Sbjct 6898 CGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACA 6840 Query 90257 ATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTTTT 90316 | ||| | ||||| || || |||||||| ||||| || ||||| || |||||||| | Sbjct 6839 ACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACCGAAACCAAGACCGACTTCT 6780 Query 90317 TCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTTAT 90376 |||| ||||| || | ||||||||||| || ||| | ||||| || ||||||||| | | Sbjct 6779 TCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGATGACCTCT 6720 Query 90377 GAG 90379 ||| Sbjct 6719 GAG 6717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425579478395582