Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq8995 145 1e-29 seq7661 89.7 8e-13 >seq8995 Length=8301158 Score = 145 bits (160), Expect = 1e-29 Identities = 383/578 (66%), Gaps = 16/578 (3%) Strand=Plus/Plus Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222 ||| ||| ||| ||||| ||||||||| || | ||| || |||||| | || || Sbjct 6971670 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 6971729 Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282 ||| | |||| ||| || ||||| ||||| || || ||| || |||||||| || || Sbjct 6971730 CATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCC 6971789 Query 18283 CTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTA--TTTATTG--CTCAGT 18337 || || ||| || || |||| | | ||| || | |||| || ||| | |||| Sbjct 6971790 TTCCACTGCA-GCAAAGGCTACCACACGTTCTCCATA--TGTAGCTTCTTTGTCCCCAGT 6971846 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 ||| ||||| ||| | | | ||| || || |||| || ||||| Sbjct 6971847 --CCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTG 6971904 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 || | | || |||||||||||||||| || |||||||| || | | | ||||||| Sbjct 6971905 AAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATT 6971964 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 |||||||||||| ||||||| || || || || | ||| || | |||||||| | Sbjct 6971965 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATC 6972024 Query 18518 TGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 |||| || | ||| ||| | || ||||| || ||||| ||||| || ||| | | Sbjct 6972025 TGAACTTCTTGGCT---AAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 6972081 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || || |||| |||| ||| |||| | | || | | ||| || | ||| Sbjct 6972082 GCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAG 6972141 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 | | || || || || || || || || || | ||||||||| || | || || | Sbjct 6972142 TGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTC 6972201 Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 || ||||| | ||||||| | | || |||||||| Sbjct 6972202 TTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 6972239 >seq7661 Length=1898141 Score = 89.7 bits (98), Expect = 8e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 |||||||||||||||| ||||||||||| || | | | ||||||||||||||||||| Sbjct 816939 TTTCTTTGGAATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGT 816880 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 ||||||| || || || || | ||| || | |||||||| Sbjct 816879 TTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGG 816838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731734234244400