Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 145 1e-29
seq7661 89.7 8e-13
>seq8995
Length=8301158
Score = 145 bits (160), Expect = 1e-29
Identities = 383/578 (66%), Gaps = 16/578 (3%)
Strand=Plus/Plus
Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222
||| ||| ||| ||||| ||||||||| || | ||| || |||||| | || ||
Sbjct 6971670 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 6971729
Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282
||| | |||| ||| || ||||| ||||| || || ||| || |||||||| || ||
Sbjct 6971730 CATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCC 6971789
Query 18283 CTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTA--TTTATTG--CTCAGT 18337
|| || ||| || || |||| | | ||| || | |||| || ||| | ||||
Sbjct 6971790 TTCCACTGCA-GCAAAGGCTACCACACGTTCTCCATA--TGTAGCTTCTTTGTCCCCAGT 6971846
Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397
||| ||||| ||| | | | ||| || || |||| || |||||
Sbjct 6971847 --CCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTG 6971904
Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457
|| | | || |||||||||||||||| || |||||||| || | | | |||||||
Sbjct 6971905 AAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATT 6971964
Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517
|||||||||||| ||||||| || || || || | ||| || | |||||||| |
Sbjct 6971965 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATC 6972024
Query 18518 TGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574
|||| || | ||| ||| | || ||||| || ||||| ||||| || ||| | |
Sbjct 6972025 TGAACTTCTTGGCT---AAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 6972081
Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634
|| || || |||| |||| ||| |||| | | || | | ||| || | |||
Sbjct 6972082 GCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAG 6972141
Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694
| | || || || || || || || || || | ||||||||| || | || || |
Sbjct 6972142 TGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTC 6972201
Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732
|| ||||| | ||||||| | | || ||||||||
Sbjct 6972202 TTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 6972239
>seq7661
Length=1898141
Score = 89.7 bits (98), Expect = 8e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470
|||||||||||||||| ||||||||||| || | | | |||||||||||||||||||
Sbjct 816939 TTTCTTTGGAATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGT 816880
Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
||||||| || || || || | ||| || | ||||||||
Sbjct 816879 TTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGG 816838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731734234244400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |