Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq899 114 3e-20
seq8560 107 4e-18
seq5233 100 6e-16
seq9216 93.3 8e-14
seq504 93.3 8e-14
>seq899
Length=2520420
Score = 114 bits (126), Expect = 3e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| || || | || | || | ||| | |||||| ||| || || |||
Sbjct 2265311 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 2265370
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| ||||| || |||||||| || |||||||| || ||
Sbjct 2265371 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGG 2265430
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| |||||||| || || ||||| || | || | ||
Sbjct 2265431 GGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCC 2265490
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || |||||||||||||||||||| | || || | ||| |||||||||
Sbjct 2265491 ACCTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541
>seq8560
Length=3069389
Score = 107 bits (118), Expect = 4e-18
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368
||||| | ||| | || |||||||| | ||| | ||| ||| || || || || |||||
Sbjct 2390301 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 2390243
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| ||
Sbjct 2390242 CAAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGG 2390184
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||| ||| | ||| || | || ||
Sbjct 2390183 AATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGAC 2390124
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAATATCTGCATTTT 192539
| ||||| ||||| || || || || || || | ||| |||||||| ||
Sbjct 2390123 CTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 2390072
>seq5233
Length=2008183
Score = 100 bits (110), Expect = 6e-16
Identities = 123/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 192372 TGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTAT 192431
||| | | |||| |||||||| || ||||||||||| | ||| || ||||| || || ||
Sbjct 1606579 TGTACATCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAAT 1606638
Query 192432 TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTC 192491
||||| ||||||||| || || |||||||| ||| | |||||| | || |||||
Sbjct 1606639 TCCTTTTTTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTC 1606698
Query 192492 TAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|||| |||| || | || | || || || || |||||||| ||
Sbjct 1606699 GGGAGTGATGGACTTTCTTGTCAGGGTCTTCATGAAAATCTGCATCTT 1606746
>seq9216
Length=6899875
Score = 93.3 bits (102), Expect = 8e-14
Identities = 137/193 (71%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || || || || ||||| || || | | |||| |||| ||| || ||||||||||
Sbjct 1291511 CTTTTGA-ATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGA 1291453
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
| | ||| || || ||||| | |||||||| ||||| || || || ||||||||
Sbjct 1291452 TCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTA 1291393
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
||| | ||| || | | || || ||||| ||||| || | || | || || || |
Sbjct 1291392 CTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGGGTCTTCATGA 1291333
Query 192527 ATATCTGCATTTT 192539
| |||||||| ||
Sbjct 1291332 AAATCTGCATCTT 1291320
>seq504
Length=1076656
Score = 93.3 bits (102), Expect = 8e-14
Identities = 137/193 (71%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || || || || ||||| || || | | |||| |||| ||| || ||||||||||
Sbjct 268466 CTTTTGA-ATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGA 268408
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
| | ||| || || ||||| || |||||||| ||||| || || || ||||| ||
Sbjct 268407 TCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGGCTTTACGTTTT 268348
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
| | | ||| || | || || || ||||| ||||| || || || | || || | |
Sbjct 268347 CTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGA 268288
Query 192527 ATATCTGCATTTT 192539
| |||||||| ||
Sbjct 268287 AAATCTGCATCTT 268275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984290051044650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |