Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq11548 201 4e-47 seq7823 190 7e-44 seq9689 188 2e-43 seq9683 174 5e-39 seq9026 158 4e-34 seq6714 138 4e-28 seq7278 120 1e-22 seq4285 105 2e-18 >seq11548 Length=62939 Score = 201 bits (222), Expect = 4e-47 Identities = 267/371 (72%), Gaps = 0/371 (0%) Strand=Plus/Minus Query 40373 CAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGAT 40432 || ||||||| | | |||||||| | || ||| ||||| | ||| | || ||| Sbjct 8287 CATCACGCGGCCAGTGTCCTTCAGCACGGCGCGGGCCTTCAATTTACCGAAGGTGATGAT 8228 Query 40433 CTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACG 40492 ||| ||||| | |||| || || ||| | || || ||||||||||||| || || Sbjct 8227 CTGGGCGACATGGTCGCTGCCATATTTCTGCTGCACATAGCGGATCACCTCGCCGCGCCG 8168 Query 40493 CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCG 40552 | || ||||||||| |||| ||||||||||| ||||| || ||||||||||| || Sbjct 8167 CGTTTCGCAGAAGTCGATATCGAAGTCGGGCATGGAAACGCGTTCCGGGTTCAGGAAGCG 8108 Query 40553 CTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGAC 40612 |||||| | || || | | |||||||||||| || ||||| || | ||||||| Sbjct 8107 CTCGAACAGCAGGCCCAGTTGCAGCGGGTCGAGATCAGTGATGGTCAGCGCCCAGGCGAC 8048 Query 40613 CAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCA 40672 |||||| ||||| | || || || || || || ||| | | | ||||| ||||| Sbjct 8047 CAGCGATCCGGCACCCGAACCACGGCCCGGACCCACCGGAATATCATGATCCTTGGCCCA 7988 Query 40673 GCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTC 40732 ||||||||| || |||| |||||||| |||||||||||||||||||| ||||| Sbjct 7987 TTTGATGAAGTCGGCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTGGATGATGATGTC 7928 Query 40733 GATCTCGTACT 40743 || ||| ||| Sbjct 7927 CATTTCGAACT 7917 Score = 80.6 bits (88), Expect = 9e-11 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 ||||||||||||| || ||||| || |||||||| | || || | ||| ||||||| || Sbjct 9056 TCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGTCGCCAAGCGAGTAGCCGGCCAGGA 8997 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGA 39657 |||||| ||| | |||||| ||||| |||| || || Sbjct 8996 TCTGCGCGGCCTGCATCACCTGTTCCTGATAGACGAAGA 8958 >seq7823 Length=199163 Score = 190 bits (210), Expect = 7e-44 Identities = 233/314 (74%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTT--CCGGGTGACGTACTGGATCACCTCGCCA 40487 |||||| |||||| |||| | |||||||| || || ||||| ||| ||||| | Sbjct 171076 GATCTGGGCGACCCGGTCGTCGCCGTACTTGTCCTGG--ACGTAGGCGATGACCTCTTCG 171133 Query 40488 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40545 || || || | || |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 171134 CGGCGTTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCA 171191 Query 40546 GGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40605 ||||||||||||| | || ||| | |||||| ||||| | |||||| ||| ||| Sbjct 171192 GGAACCGCTCGAACAGCAGGCCGAACCGCAGCGGATCGAGATTGGTGATGGTCAGGGCGT 171251 Query 40606 AGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCT 40665 |||||||||| || ||||| | || || ||||| || || || || ||||| || Sbjct 171252 AGGCGACCAGAGAGCCGGCGCCCGAACCCCGCCCGGGCCCCACGGGGATGCCGTGGGTCT 171311 Query 40666 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGA 40725 | ||||| ||||||||||| |||| |||||||| || |||||||||| || Sbjct 171312 TGGCCCACTTGATGAAGTCCGAAACGATCAGGAAGTAACCGGGAAAGCCCATCTTCTGGA 171371 Query 40726 TCATGTCGATCTCG 40739 | | |||||||||| Sbjct 171372 TGACGTCGATCTCG 171385 Score = 100 bits (110), Expect = 9e-17 Identities = 211/310 (68%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 39351 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39410 || |||| | ||||| | || || || ||||| ||| |||| | |||| ||| || Sbjct 170042 GCGGCCAGGAACTCGACCGGCGCGTTCGCCTTCAACCAGCCCGTCTGATACGAGATCAGG 170101 Query 39411 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39470 |||| || || | ||||| ||||||||| ||||||| |||||| | ||| || || Sbjct 170102 GCGTAGGCGGCGGCGTGCGACTTGTTGAACCCGTAGCCGGCGAACTTGGCCACCAGTTCG 170161 Query 39471 CACA--CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCG-CTCCCTTCTGGAAG 39527 | | ||| | | ||| ||| || | | || | | ||| | ||| ||| Sbjct 170162 AAGATGCTGTCCGACTGGG--CGTTCG-GCACCCCCTTTTCAGCGGCGCCCGAGACGAAC 170218 Query 39528 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39587 | | || | | ||| |||| ||||||||||||||| |||||||| |||||| Sbjct 170219 CTGGCCTTCTGCAGGTCCATCTCCTCCTTCTTCTTCTTGCCCATGGCCCGGCGCAGCAGG 170278 Query 39588 TCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGG 39647 ||||||| || ||| |||| || |||| || ||| || | || | |||||| ||||| Sbjct 170279 TCGGCCTCGCCCAGGCTGTAGCCCGCCAGGATCTGGGCGATCTGCATCACCTGTTCCTGA 170338 Query 39648 TAGATGATGA 39657 |||| ||||| Sbjct 170339 TAGACGATGA 170348 >seq9689 Length=17130 Score = 188 bits (208), Expect = 2e-43 Identities = 220/295 (75%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 40451 CCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCG 40508 ||||||||| || | |||||| | |||||||||| | || || | ||| ||||||| Sbjct 9320 CCCGTACTTGCGCGCGACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCG 9263 Query 40509 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCG 40568 ||||||| |||||||| |||||||| ||||| || ||||| |||||||| | || | Sbjct 9262 ATGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAATCGCTCGAACAGCAGGTTG 9203 Query 40569 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40628 | | ||||||||| || ||||||||| || | | || |||||||||||||| | Sbjct 9202 TACGGCAGCGGGTCCAGATCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 9143 Query 40629 GAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40688 || || || || ||||||| | | ||| | | ||| |||| |||||||||| || Sbjct 9142 GAACCACGGCCCGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 9083 Query 40689 ACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 40743 |||| |||||||| |||||||||||||| |||||| ||| || |||| ||| Sbjct 9082 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 9028 Score = 134 bits (148), Expect = 5e-27 Identities = 226/324 (70%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 39337 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGC 39396 |||||| |||| ||||||||| |||| || |||||||| |||||||||||| || Sbjct 10443 CCGAGGACAGCGTGGCCGCCATGAACTCAGCCGGGTAGTGGCGCTTCAGCCACGCGGTCT 10384 Query 39397 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACG 39456 |||| || ||| | || || || | ||||| |||||||||| |||| || |||||| Sbjct 10383 GGTAGCTGACCAGTGCATAGGCAGCGGCGTGCGACTTGTTGAAGCCGTAACCGGCGAACT 10324 Query 39457 GGACCAGCACGTCCCACACTGCCTGG---ATGGCACCGTCCGAGTAGCCTCGCTCGCGCG 39513 ||| || ||| | | || | | |||| ||||| | | || || | || Sbjct 10323 TCTCCATCAGGTCGAAGATCGCATCGGCCTTGGCTTCGTCC--ACACCGTC-CTTGGCCG 10267 Query 39514 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCG 39573 | || | ||||| || || | |||||||| | | ||| |||||||||||||| Sbjct 10266 CACCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCATCG 10207 Query 39574 CCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCT 39633 | ||||| ||||||||||| || || | ||| ||| | | || |||||| | || | Sbjct 10206 CGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCA 10147 Query 39634 GCACCTGCTCCTGGTAGATGATGA 39657 ||||||||||||||| | |||| Sbjct 10146 TCACCTGCTCCTGGTACACCATGA 10123 >seq9683 Length=137075 Score = 174 bits (192), Expect = 5e-39 Identities = 186/243 (77%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| | Sbjct 109569 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 109510 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || || ||||||||||| ||||| |||||| ||| |||||||| |||||||| || Sbjct 109509 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 109450 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC-GCCGTTCTCCTTCGCCCAGCGGATGA 40680 ||| | || || || || || || | | ||| |||||| ||| ||||| ||||| Sbjct 109449 GGCGCCCGATCCGCGGCCCGGACCCA-CGGGACAGCCGTTGAGCTTGGCCCACTTGATGA 109391 Query 40681 AGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGT 40740 |||| | |||| ||||||||| ||| |||||||||| || ||| || |||||||| Sbjct 109390 AGTCGCCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 109331 Query 40741 ACT 40743 ||| Sbjct 109330 ACT 109328 >seq9026 Length=54586 Score = 158 bits (174), Expect = 4e-34 Identities = 210/290 (72%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 40475 GATCACCTCGCCACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACG 40532 ||||||||| | |||||| | | || |||||||| ||||| |||||||| || || Sbjct 21732 GATCACCTCTTCGCGACGCTCCTGGCA--GAAGTCGACGTCGAAGTCGGGCATCGAAACC 21789 Query 40533 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTG 40592 || ||||| || |||||||||||||| | || || ||||||||| ||||||||| Sbjct 21790 CGTTCGGGATTGAGGAACCGCTCGAACAGCAGACCAAAGCGCAGCGGGTCCAGGTCGGTG 21849 Query 40593 ATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAG 40652 || || || ||||||||||||| ||||| | ||||| || || |||||||| Sbjct 21850 ATGGTCAGTACCCAGGCGACCAGCGACCCGGCGCCCGAGCCCCGTCCGGGGCCGACGGGA 21909 Query 40653 ACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAG 40712 | |||| | |||| |||| |||||| |||| |||| |||||||| |||||| Sbjct 21910 ATACCGTGCGCCTTACCCCATTTGATGAAATCCGACACGATCAGGAAGTAGCCGGGGAAG 21969 Query 40713 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTC 40762 ||||||| ||| ||| ||| |||| | | |||| | || | || ||| Sbjct 21970 CCCATCTTCTCGATGATGCCGAGCTCGAAATCGAGCCGTTTCCAGTACTC 22019 >seq6714 Length=1758414 Score = 138 bits (152), Expect = 4e-28 Identities = 226/320 (71%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATCACCTCGCCAC 40488 |||||| |||||| |||| ||||| || | || ||||| |||||||||| | | Sbjct 59298 GATCTGTCCGACCTGGTCGCGGCCGTATTTG-GCCTGTACGTAGCGGATCACCTCTTCGC 59356 Query 40489 GACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAG 40546 | || || | || |||||||||||||| |||||||| || ||||| ||||| || || Sbjct 59357 GGCGATCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGGTCGGGATTAAG 59414 Query 40547 GAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA 40606 ||| |||||||| | || | |||||| |||| |||||||| || |||| Sbjct 59415 GAAGCGCTCGAACAGCAGCGAGAAGCGCAGCGGATCGACATCGGTGATGAGAAGCGCGTA 59474 Query 40607 GGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTT 40666 ||| ||||||||||| || | ||||| || || |||||||| | | | | | ||| Sbjct 59475 GGCAACCAGCGAACCCGCACCCGAGCCACGGCCCGGGCCGACAGGAATGTCATGTTGCTT 59534 Query 40667 CGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT---CTGGAT 40723 ||||| ||||||||||| |||| ||||| || ||||| ||| |||||| Sbjct 59535 GGCCCATTTGATGAAGTCCGACACGATCAGGAAATAGCCGGGGAACTTCATGCGCTGGAT 59594 Query 40724 GATCATGTCGATCTCGTACT 40743 | ||| |||||||| ||| Sbjct 59595 G---ATGCCGATCTCGAACT 59611 Score = 86.0 bits (94), Expect = 2e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 ||||||||||||| || ||||| | || ||||||||||||||| ||||| || || | Sbjct 58472 TCTTCTTGCCCATGGCGCGGCGCAACAAGTCGGCCTGACCGAGCGTGTAGCCCGCAAGCT 58531 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655 | ||||| | || | |||||| |||||||||| ||| Sbjct 58532 CTTGCGCGATCTGCATCACCTGTTCCTGGTAGACGAT 58568 >seq7278 Length=293576 Score = 120 bits (132), Expect = 1e-22 Identities = 235/343 (69%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 40363 AGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGT 40422 ||||| | |||||||||||| | |||| || ||| ||||||| | | ||| Sbjct 266443 AGGGCATTTCCAGCACGCGGCCGACGTCGCGCAAAGCGGCACGCGCCTGCAGCGAACCGA 266502 Query 40423 ACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATCACC 40481 | || ||||||||| |||| || || || || | || || || |||||||| Sbjct 266503 AGGTGATGATCTGCGCCACCTGCTCACGGCCATA-TTTGGCCTGCACATAGCGGATCACC 266561 Query 40482 TCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGG 40539 || | || || || | || ||||||||| |||| |||||||| || ||||| || | Sbjct 266562 TCCTCGCGGCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGATACGCGTTCAG 266619 Query 40540 GGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGA 40599 | || ||||| || ||||| | || | |||||| |||| |||||||||| | Sbjct 266620 GATTGAGGAAGCGTTCGAATAGCAGCGAGAAACGCAGCGGATCGACGTCGGTGATCGTCA 266679 Query 40600 GGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGT 40659 | | || ||||| ||||| ||||| | || || || || ||||| ||| | | | | Sbjct 266680 GCGCATAAGCGACGAGCGAGCCGGCACCCGAACCACGGCCCGGGCCAACCGGAATGTCAT 266739 Query 40660 TCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40702 || ||| ||||| ||||||||| || |||| |||||| || Sbjct 266740 GCTGCTTGGCCCATTTGATGAAGTCGGCAACGATGAGGAAATA 266782 >seq4285 Length=661 Score = 105 bits (116), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 39526 AGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCA 39585 |||||||| | |||||||| |||||| ||||||||||||||| |||||||| |||| Sbjct 425 AGTTCACGG--TGCTTGGCCATTTCCTCGGCCTTCTTCTTGCCCATGGCCCGGCGCAGCA 482 Query 39586 GGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCT 39645 |||||| ||| || | ||| || | || |||||||| | || | ||||||||||| Sbjct 483 AGTCGGCGCCACCCAGCGAGTAGCCACCGATCACCTGCGCCATCTGCATCACCTGCTCCT 542 Query 39646 GGTAGATGATGA 39657 |||||| |||| Sbjct 543 GGTAGACCATGA 554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163855493198212