Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021299.1
Length=80955
Score E
Sequences producing significant alignments: (Bits) Value
seq8824 533 8e-147
seq9463 107 1e-18
>seq8824
Length=455128
Score = 533 bits (590), Expect = 8e-147
Identities = 684/939 (73%), Gaps = 12/939 (1%)
Strand=Plus/Minus
Query 59270 TCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACCAACA 59329
|||||||||||||| || ||||||||||| || || || |||||||| ||||| |
Sbjct 416903 TCAACTGGAACCGCATCGAGGACGACAAGGACCTCGAAGTGTGGAACCGCCTGACCTCGA 416844
Query 59330 ACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACGCTGA 59389
| ||||||||||| || ||| | || ||||||| |||||||| ||||||| |||||||
Sbjct 416843 ATTTCTGGCTGCCGGAAAAGGTGCCGCTCTCCAATGACATCCCCTCCTGGGGAACGCTGA 416784
Query 59390 CGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGACACGA 59449
| ||||||||| || ||||| || ||||||||||| ||||| |||||||||| |
Sbjct 416783 AGCCGGAAGAGCAGAAGCTGACGATCCGCGTCTTCACCGGGCTGACATTGCTCGACACCA 416724
Query 59450 TCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAGGAGG 59509
||||| | ||| || || ||| ||||||| | || || |||||||| |||||||
Sbjct 416723 TCCAGAACGGCGTCGGCGCCGTGCGCCTGATGGCGGATTCGGCAACGCCGCATGAGGAGG 416664
Query 59510 CGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAACATCT 59569
||||| | |||||| | ||||||||| | || ||||| ||| ||||
Sbjct 416663 CGGTGCTTTCCAACATCTCCTTCATGGAGGCTGTCCACGCCCGTTCCTATTCGTCGATCT 416604
Query 59570 TCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAGAATC 59629
||||||| |||||| || || |||| | || | |||||||| ||||| ||
Sbjct 416603 TCTCGACACTGTGCCTCACCCCTGATGTCGATGATGCCTATCGCTGGTCCGAGGAAAACG 416544
Query 59630 CGAACCTGCAACGCAA---GGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCCGC 59686
| |||||| ||||| ||| | ||| | | ||| || || |||||| ||||
Sbjct 416543 AGTTCCTGCAGCGCAAATCGGCGCTCATCATGCGGGAATATGACAGTGGTGAC---CCGC 416487
Query 59687 TGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTACC 59746
||||| |||| | ||| ||| ||||| | ||||||||||| || |||||||| |
Sbjct 416486 TGAAGAAGAAGATCGCCAGCGTGTTTCTGGAAAGCTTCCTGTTCTATTCCGGCTTCTATC 416427
Query 59747 TGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCTCA 59806
||||||||| |||||| || || | ||||| || |||||||| || ||||||| || |
Sbjct 416426 TGCCGATGTTCTGGTCAAGCCGCGCCAAGCTCACCAACACGGCGGATTTGATCCGTCTGA 416367
Query 59807 TCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCTGG 59866
|||| || |||||||| ||||||||||| |||||||| |||||||||||||| | |||
Sbjct 416366 TCATCCGCGACGAGGCCGTGCACGGCTATTACATCGGCTACAAGTTCCAGCGGGCGGTGG 416307
Query 59867 A--GACTCAG-AACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTAC 59923
| | ||| | | ||| | | ||||| | ||||| | | | || ||||| |
Sbjct 416306 ATCGGCTCGGTGAGAAGGAAAGAC---AGGAGATCAAGGATTTTGCCTTCGACCTGCTTC 416250
Query 59924 TCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTGA 59983
| ||| | |||||||||||| | || || | || || || |||||||| || ||||
Sbjct 416249 TGGAGCTTTACGACAACGAGGCGAAATATACCGAAGACCTTTATGACGGCGTCGGTCTGA 416190
Query 59984 CTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGCT 60043
| ||||| |||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct 416189 CGGAGGACGTCAAGCAGTTCCTGCATTACAACGCTAACAAGGCCCTGATGAATCTGGGCT 416130
Query 60044 ACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTGT 60103
||||||| ||||| ||| ||| | | ||| ||| |||||||| | | || || |
Sbjct 416129 ACGAGGCACTGTTTCCGGCCGAGGCCTGCCGGGTCAATCCGGCGATCCTCTCCGCGCTCT 416070
Query 60104 CCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATTG 60163
| || | ||||| ||||||||||||||||| || || ||| | ||||| ||||
Sbjct 416069 CGCCCAATGCTGACGAAAACCACGACTTCTTCTCCGGTTCCGGCTCGTCCTATGTCATTG 416010
Query 60164 GCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202
||||||| | | || || |||||||| ||||| ||||
Sbjct 416009 GCAAGGCGGTCGCCACCGAGGACGAGGACTGGGATTTCT 415971
>seq9463
Length=63583
Score = 107 bits (118), Expect = 1e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 61694 TGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGCAAGGGATCTG 61753
||||||||||| || |||| ||||| ||||||| || | |||| ||||| ||| |
Sbjct 40942 TGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCCA 40883
Query 61754 CGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGACA 61813
| |||||| | |||||||| ||| || || |||| ||||| || || || || ||||
Sbjct 40882 CCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGACA 40823
Query 61814 TCGGCTGCGGCATGATTGCCGT 61835
|||||||||||||||| || ||
Sbjct 40822 TCGGCTGCGGCATGATGGCGGT 40801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 258883677952284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |