Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq8824 533 8e-147 seq9463 107 1e-18 >seq8824 Length=455128 Score = 533 bits (590), Expect = 8e-147 Identities = 684/939 (73%), Gaps = 12/939 (1%) Strand=Plus/Minus Query 59270 TCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACCAACA 59329 |||||||||||||| || ||||||||||| || || || |||||||| ||||| | Sbjct 416903 TCAACTGGAACCGCATCGAGGACGACAAGGACCTCGAAGTGTGGAACCGCCTGACCTCGA 416844 Query 59330 ACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACGCTGA 59389 | ||||||||||| || ||| | || ||||||| |||||||| ||||||| ||||||| Sbjct 416843 ATTTCTGGCTGCCGGAAAAGGTGCCGCTCTCCAATGACATCCCCTCCTGGGGAACGCTGA 416784 Query 59390 CGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGACACGA 59449 | ||||||||| || ||||| || ||||||||||| ||||| |||||||||| | Sbjct 416783 AGCCGGAAGAGCAGAAGCTGACGATCCGCGTCTTCACCGGGCTGACATTGCTCGACACCA 416724 Query 59450 TCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAGGAGG 59509 ||||| | ||| || || ||| ||||||| | || || |||||||| ||||||| Sbjct 416723 TCCAGAACGGCGTCGGCGCCGTGCGCCTGATGGCGGATTCGGCAACGCCGCATGAGGAGG 416664 Query 59510 CGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAACATCT 59569 ||||| | |||||| | ||||||||| | || ||||| ||| |||| Sbjct 416663 CGGTGCTTTCCAACATCTCCTTCATGGAGGCTGTCCACGCCCGTTCCTATTCGTCGATCT 416604 Query 59570 TCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAGAATC 59629 ||||||| |||||| || || |||| | || | |||||||| ||||| || Sbjct 416603 TCTCGACACTGTGCCTCACCCCTGATGTCGATGATGCCTATCGCTGGTCCGAGGAAAACG 416544 Query 59630 CGAACCTGCAACGCAA---GGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCCGC 59686 | |||||| ||||| ||| | ||| | | ||| || || |||||| |||| Sbjct 416543 AGTTCCTGCAGCGCAAATCGGCGCTCATCATGCGGGAATATGACAGTGGTGAC---CCGC 416487 Query 59687 TGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTACC 59746 ||||| |||| | ||| ||| ||||| | ||||||||||| || |||||||| | Sbjct 416486 TGAAGAAGAAGATCGCCAGCGTGTTTCTGGAAAGCTTCCTGTTCTATTCCGGCTTCTATC 416427 Query 59747 TGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCTCA 59806 ||||||||| |||||| || || | ||||| || |||||||| || ||||||| || | Sbjct 416426 TGCCGATGTTCTGGTCAAGCCGCGCCAAGCTCACCAACACGGCGGATTTGATCCGTCTGA 416367 Query 59807 TCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCTGG 59866 |||| || |||||||| ||||||||||| |||||||| |||||||||||||| | ||| Sbjct 416366 TCATCCGCGACGAGGCCGTGCACGGCTATTACATCGGCTACAAGTTCCAGCGGGCGGTGG 416307 Query 59867 A--GACTCAG-AACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTAC 59923 | | ||| | | ||| | | ||||| | ||||| | | | || ||||| | Sbjct 416306 ATCGGCTCGGTGAGAAGGAAAGAC---AGGAGATCAAGGATTTTGCCTTCGACCTGCTTC 416250 Query 59924 TCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTGA 59983 | ||| | |||||||||||| | || || | || || || |||||||| || |||| Sbjct 416249 TGGAGCTTTACGACAACGAGGCGAAATATACCGAAGACCTTTATGACGGCGTCGGTCTGA 416190 Query 59984 CTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGCT 60043 | ||||| |||||| |||||||| |||||||| |||||||| ||||||||||| |||| Sbjct 416189 CGGAGGACGTCAAGCAGTTCCTGCATTACAACGCTAACAAGGCCCTGATGAATCTGGGCT 416130 Query 60044 ACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTGT 60103 ||||||| ||||| ||| ||| | | ||| ||| |||||||| | | || || | Sbjct 416129 ACGAGGCACTGTTTCCGGCCGAGGCCTGCCGGGTCAATCCGGCGATCCTCTCCGCGCTCT 416070 Query 60104 CCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATTG 60163 | || | ||||| ||||||||||||||||| || || ||| | ||||| |||| Sbjct 416069 CGCCCAATGCTGACGAAAACCACGACTTCTTCTCCGGTTCCGGCTCGTCCTATGTCATTG 416010 Query 60164 GCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 ||||||| | | || || |||||||| ||||| |||| Sbjct 416009 GCAAGGCGGTCGCCACCGAGGACGAGGACTGGGATTTCT 415971 >seq9463 Length=63583 Score = 107 bits (118), Expect = 1e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 61694 TGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGCAAGGGATCTG 61753 ||||||||||| || |||| ||||| ||||||| || | |||| ||||| ||| | Sbjct 40942 TGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCCA 40883 Query 61754 CGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGACA 61813 | |||||| | |||||||| ||| || || |||| ||||| || || || || |||| Sbjct 40882 CCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGACA 40823 Query 61814 TCGGCTGCGGCATGATTGCCGT 61835 |||||||||||||||| || || Sbjct 40822 TCGGCTGCGGCATGATGGCGGT 40801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258883677952284