Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021301.1
Length=56279
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 266 1e-66
seq6089 232 2e-56
>seq12569
Length=80069
Score = 266 bits (294), Expect = 1e-66
Identities = 373/522 (71%), Gaps = 21/522 (4%)
Strand=Plus/Minus
Query 43279 GACAGCTCGGTGGACCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACG 43338
|||||| |||| |||||| |||||| || |||||||| | || |||||||| ||
Sbjct 62704 GACAGC---GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCG 62648
Query 43339 CCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGAC 43398
|||| |||| ||| ||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct 62647 CCGAACTACGCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGAC 62588
Query 43399 TACCTCACACCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTC 43458
| ||| | ||| ||||||||||| | |||||||||||||| | |||| ||||||
Sbjct 62587 TTTCTCGCCCCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTG 62528
Query 43459 AAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTC 43518
|||||||| ||| || || | |||||| |||| | | || || | |||||||
Sbjct 62527 AAGGACCGGATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTC 62468
Query 43519 CACGCCGA------GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGC--- 43569
| ||| |||| ||| |||||| |||||||| ||||||||||
Sbjct 62467 GCGGACGACTGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAA 62414
Query 43570 ATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGG 43629
| || || | || ||||| || || || || ||||||||||| || ||||||||||||
Sbjct 62413 AAGACCAACCTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGG 62357
Query 43630 TCGGAGCAGTGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATACGTTCTGCTG 43689
||||||||||| |||| | ||||| | ||| |||||| | || ||||||
Sbjct 62356 AGCGAGCAGTGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTG 62297
Query 43690 TTCCACAAACCGCAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCC 43749
|||| ||| |||| | ||| ||| || || ||||||||| || || | || |
Sbjct 62296 TTCCGCAAGCCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGAC 62237
Query 43750 AAGGACGAATACACCCGTGCCCGTTGGCAGGTGGACGCGCAC 43791
||||| |||| ||| || || |||||| | |||||||||
Sbjct 62236 AAGGATCGCTACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 197 bits (218), Expect = 5e-46
Identities = 421/619 (68%), Gaps = 21/619 (3%)
Strand=Plus/Minus
Query 41953 TTCGCGGCGTTTGGTCTGGGAAAGACGGTGATGCAGTTGGAGATCGTGCGCCTGTCCCTG 42012
||||| || || || ||||| || | || | ||||||||||| ||||| ||
Sbjct 64021 TTCGCCGCCTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGAT--TGCGCGGATCATGC 63964
Query 42013 GCGAAGCACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGTGTGCGGATCGAGTTC 42072
|||| | | |||||| | || |||||||| || ||||| || |||||| ||||||
Sbjct 63963 GCGA-GATCTCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTC 63905
Query 42073 GCCCACGACGCCGACATGCTGGGCATTGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTC 42132
| ||||||| |||||||||| || ||||||| |||| || | || ||
Sbjct 63904 ATGCGGGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGA---- 63849
Query 42133 GGCGG-CGAT------GGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGCAAGCT 42185
||||| |||| || |||| || |||||||| |||| || || |||||||||||
Sbjct 63848 GGCGGACGATCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCT 63789
Query 42186 GGACCCGACACTGTT-CACGGCCGTCTCACTCGATGAGGCATCCGTGCTGCGCTCGTTCG 42244
||||| | ||||| | ||| || || || || ||||| ||| ||||| ||||
Sbjct 63788 CGACCCATC-CTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCG 63730
Query 42245 GG---TCGAAGACCTACCAGTCGTTCCTGGAGCTGTTCGACGGCGTGCCCTATCGGTTTG 42301
| || ||||||| | |||| || ||||||||| || ||||||| || |
Sbjct 63729 GCGGCTCCAAGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCG 63670
Query 42302 TCGCCACCGCGACGCCGTCTCCGAATCGCTTCAAGGAGCTGATCCACTACGCGGGCTATC 42361
||||||| || |||||||| || || |||| |||||| || ||| ||| | |
Sbjct 63669 TCGCCACGGCCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCC 63610
Query 42362 TCGGTGTGATGGACACCGGCGCAG-CGTTGACGCGTTGGTTCCAGCGGGACTCCACGAAG 42420
| || |||||||| ||| |||| | ||| || | |||| ||| ||| | | |
Sbjct 63609 TGGGCGTGATGGATGTCGG-GCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCAC 63551
Query 42421 GCGAACAACCTCACCCTCTATCCCCACAAGGAGCGTGAGTTCTTTCTGTGGCTCAACACC 42480
|| || ||||||||| | || ||||| ||||| ||||||| |||||| | | |
Sbjct 63550 GCCGACGCCCTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGC 63491
Query 42481 TGGGCCGCGTTCGTGCAATCGCCGGCAGACCTCGGTCACGACGCCACCGGATACGACCTG 42540
|||| |||||| || |||| || ||||| | || | ||| |||||||||
Sbjct 63490 TGGGGTCTGTTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTG 63431
Query 42541 CCGCCCCTGGAGGTGGTCT 42559
||||||||| ||||| |||
Sbjct 63430 CCGCCCCTGCAGGTGATCT 63412
Score = 104 bits (114), Expect = 8e-18
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 44063 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 44122
||| |||| |||||||||||| ||||| ||||| ||||||||||||| | | ||
Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861
Query 44123 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 44182
| || ||||| |||||||||| ||||||||||| ||| |||||||| | || ||
Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801
Query 44183 TGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 44242
| || | || ||| |||| | | ||||||||| || | ||||| |||| | ||
Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741
Query 44243 TCAAG 44247
| |||
Sbjct 61740 TGAAG 61736
>seq6089
Length=13452
Score = 232 bits (256), Expect = 2e-56
Identities = 493/728 (68%), Gaps = 30/728 (4%)
Strand=Plus/Minus
Query 41866 GTCGGCCCCGATGATGTTCACCCGATGCTGTTGCCGCACCAGCGTGATTTGGTGCGTTGG 41925
|||| | || |||| || || ||||| ||| | |||||| || |||| || |||
Sbjct 4809 GTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGCTGGTCCGGTGG 4750
Query 41926 GCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTTGGTCTGGGAAAGACGGTGATG 41985
|| |||| || ||||| || ||||||||||| ||||| || ||||| ||| |||| |||
Sbjct 4749 GCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCAAGTCGGTCATG 4690
Query 41986 CAGTTGGAGATCGTGCGCCTGTCCCTGGCGA--AGCACGGCGGCGGTAAAGGTCTGATCG 42043
||| |||||||| |||||| | | ||||| ||| |||||| | | |||||||
Sbjct 4689 CAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGCTGGGCGGCCGGCAG---CTGATCG 4635
Query 42044 TGATGCCGCTGGGTGTGCGGATCGAGTTCGCCCACGACGCCGACATGCTGGGCATTGAAA 42103
| |||||||| |||| |||||| ||| | |||||| ||||||||| | ||
Sbjct 4634 TCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCTGGGCCTGGATC 4575
Query 42104 CCCGGTTCGTTCGCCGCACAGA--AGAAGTCG------GCGG------CGAT--GGAATC 42147
| ||| | ||| | || | ||| ||| |||| ||| || | |
Sbjct 4574 CGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCCGAGCGGGCAGC 4515
Query 42148 TAT--CTCACCAACTATGAGAGTGTCCGCGACGGCAAGCTGGACCCGACACTGTTCACGG 42205
| | || ||||||||||| ||||||||| |||||| | |||| ||| | |||| |
Sbjct 4514 TGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGACGCATTTCAATG 4455
Query 42206 CCGTCTCACTCGATGAGGCATCCGTGC-TGCGCTCGTT---CGGGTCGAAGACCTACCAG 42261
||| || || || || ||||| |||| ||||| || ||| | ||||||| ||
Sbjct 4454 CCGCGTCGCTGGACGAAGCATC-GTGCCTGCGCGGTTTTGGCGGCACCAAGACCTTCCGC 4396
Query 42262 TCGTTCCTGGAGCTGTTCGACGGCGTGCCCTATCGGTTTGTCGCCACCGCGACGCCGTCT 42321
|||| || ||||||||||||| ||| ||| |||||||||||| || ||||||||
Sbjct 4395 GAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGGCCACGCCGTCG 4336
Query 42322 CCGAATCGCTTCAAGGAGCTGATCCACTACGCGGGCTATCTCGGTGTGATGGACACCGGC 42381
||||| || | |||||| | ||| || | || || | | ||||| ||||
Sbjct 4335 CCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCATGGATGTCGGC 4276
Query 42382 GCAGCGTTGACGCGTTGGTTCCAGCGGGACTCCACGAAGGCGAACAACCTCACCCTCTAT 42441
|| ||| || | ||| ||||| || | |||||| || | || ||| || ||
Sbjct 4275 CAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAACTGACCATCCAT 4216
Query 42442 CCCCACAAGGAGCGTGAGTTCTTTCTGTGGCTCAACACCTGGGCCGCGTTCGTGCAATCG 42501
|| |||||||| || |||| |||||| | || | ||||||||| ||||| || |
Sbjct 4215 CCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCATTCGTCCAGCGG 4156
Query 42502 CCGGCAGACCTCGGTCACGACGCCACCGGATACGACCTGCCGCCCCTGGAGGTGGTCTGG 42561
||| || || ||| || | || || |||||||| ||||| ||| ||||
Sbjct 4155 CCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTGGACGTGCGCTGG 4096
Query 42562 CATGAGGT 42569
||||||||
Sbjct 4095 CATGAGGT 4088
Score = 170 bits (188), Expect = 7e-38
Identities = 314/456 (69%), Gaps = 6/456 (1%)
Strand=Plus/Minus
Query 43293 CCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGA 43352
|||||||||||||||| | || || || ||| || || || |||||||||| || ||
Sbjct 3376 CCTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGA 3317
Query 43353 CTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCA 43412
|||||||| |||||||| || ||||||| |||||||||||||| || || || |
Sbjct 3316 TTTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGA 3257
Query 43413 GCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTT 43472
|||||||||| || | ||||||||| | || || || ||||| ||| ||
Sbjct 3256 GCTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTT 3199
Query 43473 GTTCGG--AAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGC-CGAGGC 43529
|||| | | | || || ||| | | ||| | |||||||| || || ||
Sbjct 3198 GTTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC 3139
Query 43530 GATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGA 43589
||| || ||| || ||||||| ||| || |||||| | || | ||||||||
Sbjct 3138 -ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGA 3080
Query 43590 TGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGC 43649
||| || || || || || || |||||||||||| | ||||||||||| || ||
Sbjct 3079 TGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGC 3020
Query 43650 CACCAAGATGGGTGTCGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAAACAGA 43709
|| | ||||| |||||| || ||||| | || ||||||| ||| |||| || ||
Sbjct 3019 CAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGA 2960
Query 43710 CAGGTCGAAGGGATACGCCGACACACCCGTCACCAA 43745
| || || || || ||||| || ||||||||
Sbjct 2959 CCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
Score = 80.6 bits (88), Expect = 1e-10
Identities = 121/172 (70%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 44074 TGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 44133
|||||||||| ||||| ||||| ||||| ||||| || || || |||||
Sbjct 2478 TGCCCCCTGCCCTTCGATATCGTCGACCGCGCCATCACGAACTGGAGCAACCCGGGCGAC 2419
Query 44134 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTCTGAAACTTGGT 44193
|| | | || ||||||||||| ||| || ||||| |||| ||| |||| | |||
Sbjct 2418 CTGATCTATGATCCGTTCGGCGGCCTGATGACGGTGCCCCTGCGCGCTGTGAAGCATGGC 2359
Query 44194 CGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTGTCA 44245
||||| ||| | | | |||||| ||||||| ||| | | ||||| ||||
Sbjct 2358 CGCCGGGGCGGCGCGGCCGAGCTTAATCCCGACTATTTCCGCGATGGCGTCA 2307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 179939016537678
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