Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021301.1 Length=56279 Score E Sequences producing significant alignments: (Bits) Value seq12569 266 1e-66 seq6089 232 2e-56 >seq12569 Length=80069 Score = 266 bits (294), Expect = 1e-66 Identities = 373/522 (71%), Gaps = 21/522 (4%) Strand=Plus/Minus Query 43279 GACAGCTCGGTGGACCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACG 43338 |||||| |||| |||||| |||||| || |||||||| | || |||||||| || Sbjct 62704 GACAGC---GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCG 62648 Query 43339 CCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGAC 43398 |||| |||| ||| ||||| ||||||||||||||||| ||||||||| ||||||||| Sbjct 62647 CCGAACTACGCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGAC 62588 Query 43399 TACCTCACACCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTC 43458 | ||| | ||| ||||||||||| | |||||||||||||| | |||| |||||| Sbjct 62587 TTTCTCGCCCCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTG 62528 Query 43459 AAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTC 43518 |||||||| ||| || || | |||||| |||| | | || || | ||||||| Sbjct 62527 AAGGACCGGATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTC 62468 Query 43519 CACGCCGA------GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGC--- 43569 | ||| |||| ||| |||||| |||||||| |||||||||| Sbjct 62467 GCGGACGACTGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAA 62414 Query 43570 ATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGG 43629 | || || | || ||||| || || || || ||||||||||| || |||||||||||| Sbjct 62413 AAGACCAACCTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGG 62357 Query 43630 TCGGAGCAGTGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATACGTTCTGCTG 43689 ||||||||||| |||| | ||||| | ||| |||||| | || |||||| Sbjct 62356 AGCGAGCAGTGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTG 62297 Query 43690 TTCCACAAACCGCAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCC 43749 |||| ||| |||| | ||| ||| || || ||||||||| || || | || | Sbjct 62296 TTCCGCAAGCCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGAC 62237 Query 43750 AAGGACGAATACACCCGTGCCCGTTGGCAGGTGGACGCGCAC 43791 ||||| |||| ||| || || |||||| | ||||||||| Sbjct 62236 AAGGATCGCTACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 197 bits (218), Expect = 5e-46 Identities = 421/619 (68%), Gaps = 21/619 (3%) Strand=Plus/Minus Query 41953 TTCGCGGCGTTTGGTCTGGGAAAGACGGTGATGCAGTTGGAGATCGTGCGCCTGTCCCTG 42012 ||||| || || || ||||| || | || | ||||||||||| ||||| || Sbjct 64021 TTCGCCGCCTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGAT--TGCGCGGATCATGC 63964 Query 42013 GCGAAGCACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGTGTGCGGATCGAGTTC 42072 |||| | | |||||| | || |||||||| || ||||| || |||||| |||||| Sbjct 63963 GCGA-GATCTCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTC 63905 Query 42073 GCCCACGACGCCGACATGCTGGGCATTGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTC 42132 | ||||||| |||||||||| || ||||||| |||| || | || || Sbjct 63904 ATGCGGGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGA---- 63849 Query 42133 GGCGG-CGAT------GGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGCAAGCT 42185 ||||| |||| || |||| || |||||||| |||| || || ||||||||||| Sbjct 63848 GGCGGACGATCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCT 63789 Query 42186 GGACCCGACACTGTT-CACGGCCGTCTCACTCGATGAGGCATCCGTGCTGCGCTCGTTCG 42244 ||||| | ||||| | ||| || || || || ||||| ||| ||||| |||| Sbjct 63788 CGACCCATC-CTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCG 63730 Query 42245 GG---TCGAAGACCTACCAGTCGTTCCTGGAGCTGTTCGACGGCGTGCCCTATCGGTTTG 42301 | || ||||||| | |||| || ||||||||| || ||||||| || | Sbjct 63729 GCGGCTCCAAGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCG 63670 Query 42302 TCGCCACCGCGACGCCGTCTCCGAATCGCTTCAAGGAGCTGATCCACTACGCGGGCTATC 42361 ||||||| || |||||||| || || |||| |||||| || ||| ||| | | Sbjct 63669 TCGCCACGGCCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCC 63610 Query 42362 TCGGTGTGATGGACACCGGCGCAG-CGTTGACGCGTTGGTTCCAGCGGGACTCCACGAAG 42420 | || |||||||| ||| |||| | ||| || | |||| ||| ||| | | | Sbjct 63609 TGGGCGTGATGGATGTCGG-GCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCAC 63551 Query 42421 GCGAACAACCTCACCCTCTATCCCCACAAGGAGCGTGAGTTCTTTCTGTGGCTCAACACC 42480 || || ||||||||| | || ||||| ||||| ||||||| |||||| | | | Sbjct 63550 GCCGACGCCCTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGC 63491 Query 42481 TGGGCCGCGTTCGTGCAATCGCCGGCAGACCTCGGTCACGACGCCACCGGATACGACCTG 42540 |||| |||||| || |||| || ||||| | || | ||| ||||||||| Sbjct 63490 TGGGGTCTGTTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTG 63431 Query 42541 CCGCCCCTGGAGGTGGTCT 42559 ||||||||| ||||| ||| Sbjct 63430 CCGCCCCTGCAGGTGATCT 63412 Score = 104 bits (114), Expect = 8e-18 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 44063 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 44122 ||| |||| |||||||||||| ||||| ||||| ||||||||||||| | | || Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861 Query 44123 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 44182 | || ||||| |||||||||| ||||||||||| ||| |||||||| | || || Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801 Query 44183 TGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 44242 | || | || ||| |||| | | ||||||||| || | ||||| |||| | || Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741 Query 44243 TCAAG 44247 | ||| Sbjct 61740 TGAAG 61736 >seq6089 Length=13452 Score = 232 bits (256), Expect = 2e-56 Identities = 493/728 (68%), Gaps = 30/728 (4%) Strand=Plus/Minus Query 41866 GTCGGCCCCGATGATGTTCACCCGATGCTGTTGCCGCACCAGCGTGATTTGGTGCGTTGG 41925 |||| | || |||| || || ||||| ||| | |||||| || |||| || ||| Sbjct 4809 GTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGCTGGTCCGGTGG 4750 Query 41926 GCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTTGGTCTGGGAAAGACGGTGATG 41985 || |||| || ||||| || ||||||||||| ||||| || ||||| ||| |||| ||| Sbjct 4749 GCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCAAGTCGGTCATG 4690 Query 41986 CAGTTGGAGATCGTGCGCCTGTCCCTGGCGA--AGCACGGCGGCGGTAAAGGTCTGATCG 42043 ||| |||||||| |||||| | | ||||| ||| |||||| | | ||||||| Sbjct 4689 CAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGCTGGGCGGCCGGCAG---CTGATCG 4635 Query 42044 TGATGCCGCTGGGTGTGCGGATCGAGTTCGCCCACGACGCCGACATGCTGGGCATTGAAA 42103 | |||||||| |||| |||||| ||| | |||||| ||||||||| | || Sbjct 4634 TCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCTGGGCCTGGATC 4575 Query 42104 CCCGGTTCGTTCGCCGCACAGA--AGAAGTCG------GCGG------CGAT--GGAATC 42147 | ||| | ||| | || | ||| ||| |||| ||| || | | Sbjct 4574 CGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCCGAGCGGGCAGC 4515 Query 42148 TAT--CTCACCAACTATGAGAGTGTCCGCGACGGCAAGCTGGACCCGACACTGTTCACGG 42205 | | || ||||||||||| ||||||||| |||||| | |||| ||| | |||| | Sbjct 4514 TGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGACGCATTTCAATG 4455 Query 42206 CCGTCTCACTCGATGAGGCATCCGTGC-TGCGCTCGTT---CGGGTCGAAGACCTACCAG 42261 ||| || || || || ||||| |||| ||||| || ||| | ||||||| || Sbjct 4454 CCGCGTCGCTGGACGAAGCATC-GTGCCTGCGCGGTTTTGGCGGCACCAAGACCTTCCGC 4396 Query 42262 TCGTTCCTGGAGCTGTTCGACGGCGTGCCCTATCGGTTTGTCGCCACCGCGACGCCGTCT 42321 |||| || ||||||||||||| ||| ||| |||||||||||| || |||||||| Sbjct 4395 GAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGGCCACGCCGTCG 4336 Query 42322 CCGAATCGCTTCAAGGAGCTGATCCACTACGCGGGCTATCTCGGTGTGATGGACACCGGC 42381 ||||| || | |||||| | ||| || | || || | | ||||| |||| Sbjct 4335 CCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCATGGATGTCGGC 4276 Query 42382 GCAGCGTTGACGCGTTGGTTCCAGCGGGACTCCACGAAGGCGAACAACCTCACCCTCTAT 42441 || ||| || | ||| ||||| || | |||||| || | || ||| || || Sbjct 4275 CAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAACTGACCATCCAT 4216 Query 42442 CCCCACAAGGAGCGTGAGTTCTTTCTGTGGCTCAACACCTGGGCCGCGTTCGTGCAATCG 42501 || |||||||| || |||| |||||| | || | ||||||||| ||||| || | Sbjct 4215 CCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCATTCGTCCAGCGG 4156 Query 42502 CCGGCAGACCTCGGTCACGACGCCACCGGATACGACCTGCCGCCCCTGGAGGTGGTCTGG 42561 ||| || || ||| || | || || |||||||| ||||| ||| |||| Sbjct 4155 CCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTGGACGTGCGCTGG 4096 Query 42562 CATGAGGT 42569 |||||||| Sbjct 4095 CATGAGGT 4088 Score = 170 bits (188), Expect = 7e-38 Identities = 314/456 (69%), Gaps = 6/456 (1%) Strand=Plus/Minus Query 43293 CCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGA 43352 |||||||||||||||| | || || || ||| || || || |||||||||| || || Sbjct 3376 CCTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGA 3317 Query 43353 CTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCA 43412 |||||||| |||||||| || ||||||| |||||||||||||| || || || | Sbjct 3316 TTTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGA 3257 Query 43413 GCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTT 43472 |||||||||| || | ||||||||| | || || || ||||| ||| || Sbjct 3256 GCTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTT 3199 Query 43473 GTTCGG--AAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGC-CGAGGC 43529 |||| | | | || || ||| | | ||| | |||||||| || || || Sbjct 3198 GTTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC 3139 Query 43530 GATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGA 43589 ||| || ||| || ||||||| ||| || |||||| | || | |||||||| Sbjct 3138 -ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGA 3080 Query 43590 TGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGC 43649 ||| || || || || || || |||||||||||| | ||||||||||| || || Sbjct 3079 TGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGC 3020 Query 43650 CACCAAGATGGGTGTCGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAAACAGA 43709 || | ||||| |||||| || ||||| | || ||||||| ||| |||| || || Sbjct 3019 CAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGA 2960 Query 43710 CAGGTCGAAGGGATACGCCGACACACCCGTCACCAA 43745 | || || || || ||||| || |||||||| Sbjct 2959 CCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 Score = 80.6 bits (88), Expect = 1e-10 Identities = 121/172 (70%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 44074 TGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 44133 |||||||||| ||||| ||||| ||||| ||||| || || || ||||| Sbjct 2478 TGCCCCCTGCCCTTCGATATCGTCGACCGCGCCATCACGAACTGGAGCAACCCGGGCGAC 2419 Query 44134 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTCTGAAACTTGGT 44193 || | | || ||||||||||| ||| || ||||| |||| ||| |||| | ||| Sbjct 2418 CTGATCTATGATCCGTTCGGCGGCCTGATGACGGTGCCCCTGCGCGCTGTGAAGCATGGC 2359 Query 44194 CGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTGTCA 44245 ||||| ||| | | | |||||| ||||||| ||| | | ||||| |||| Sbjct 2358 CGCCGGGGCGGCGCGGCCGAGCTTAATCCCGACTATTTCCGCGATGGCGTCA 2307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179939016537678