Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq11548 201 4e-47 seq7823 190 7e-44 seq9689 188 2e-43 seq9683 174 5e-39 seq9026 158 4e-34 seq6714 141 3e-29 seq7278 123 8e-24 seq4285 96.9 1e-15 >seq11548 Length=62939 Score = 201 bits (222), Expect = 4e-47 Identities = 267/371 (72%), Gaps = 0/371 (0%) Strand=Plus/Minus Query 40661 CAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGAT 40720 || ||||||| | | |||||||| | || ||| ||||| | ||| | || ||| Sbjct 8287 CATCACGCGGCCAGTGTCCTTCAGCACGGCGCGGGCCTTCAATTTACCGAAGGTGATGAT 8228 Query 40721 CTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACG 40780 ||| ||||| | |||| || || ||| | || || ||||||||||||| || || Sbjct 8227 CTGGGCGACATGGTCGCTGCCATATTTCTGCTGCACATAGCGGATCACCTCGCCGCGCCG 8168 Query 40781 CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCG 40840 | || ||||||||| |||| ||||||||||| ||||| || ||||||||||| || Sbjct 8167 CGTTTCGCAGAAGTCGATATCGAAGTCGGGCATGGAAACGCGTTCCGGGTTCAGGAAGCG 8108 Query 40841 CTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGAC 40900 |||||| | || || | | |||||||||||| || ||||| || | ||||||| Sbjct 8107 CTCGAACAGCAGGCCCAGTTGCAGCGGGTCGAGATCAGTGATGGTCAGCGCCCAGGCGAC 8048 Query 40901 CAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCA 40960 |||||| ||||| | || || || || || || ||| | | | ||||| ||||| Sbjct 8047 CAGCGATCCGGCACCCGAACCACGGCCCGGACCCACCGGAATATCATGATCCTTGGCCCA 7988 Query 40961 GCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTC 41020 ||||||||| || |||| |||||||| |||||||||||||||||||| ||||| Sbjct 7987 TTTGATGAAGTCGGCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTGGATGATGATGTC 7928 Query 41021 GATCTCGTACT 41031 || ||| ||| Sbjct 7927 CATTTCGAACT 7917 >seq7823 Length=199163 Score = 190 bits (210), Expect = 7e-44 Identities = 233/314 (74%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTT--CCGGGTGACGTACTGGATCACCTCGCCA 40775 |||||| |||||| |||| | |||||||| || || ||||| ||| ||||| | Sbjct 171076 GATCTGGGCGACCCGGTCGTCGCCGTACTTGTCCTGG--ACGTAGGCGATGACCTCTTCG 171133 Query 40776 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40833 || || || | || |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 171134 CGGCGTTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCA 171191 Query 40834 GGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40893 ||||||||||||| | || ||| | |||||| ||||| | |||||| ||| ||| Sbjct 171192 GGAACCGCTCGAACAGCAGGCCGAACCGCAGCGGATCGAGATTGGTGATGGTCAGGGCGT 171251 Query 40894 AGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCT 40953 |||||||||| || ||||| | || || ||||| || || || || ||||| || Sbjct 171252 AGGCGACCAGAGAGCCGGCGCCCGAACCCCGCCCGGGCCCCACGGGGATGCCGTGGGTCT 171311 Query 40954 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGA 41013 | ||||| ||||||||||| |||| |||||||| || |||||||||| || Sbjct 171312 TGGCCCACTTGATGAAGTCCGAAACGATCAGGAAGTAACCGGGAAAGCCCATCTTCTGGA 171371 Query 41014 TCATGTCGATCTCG 41027 | | |||||||||| Sbjct 171372 TGACGTCGATCTCG 171385 Score = 96.9 bits (106), Expect = 1e-15 Identities = 210/310 (68%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 39639 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39698 || |||| | ||||| | || || || ||||| ||| |||| | |||| ||| || Sbjct 170042 GCGGCCAGGAACTCGACCGGCGCGTTCGCCTTCAACCAGCCCGTCTGATACGAGATCAGG 170101 Query 39699 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39758 |||| || || | ||||| ||||||||| ||||||| |||||| | ||| || || Sbjct 170102 GCGTAGGCGGCGGCGTGCGACTTGTTGAACCCGTAGCCGGCGAACTTGGCCACCAGTTCG 170161 Query 39759 CACA--CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCG-CTCCCTTCTGGAAG 39815 | | ||| | | ||| ||| || | | || | | ||| | ||| ||| Sbjct 170162 AAGATGCTGTCCGACTGGG--CGTTCG-GCACCCCCTTTTCAGCGGCGCCCGAGACGAAC 170218 Query 39816 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39875 | | || | | ||| |||| ||||||||||||||| |||||||| |||||| Sbjct 170219 CTGGCCTTCTGCAGGTCCATCTCCTCCTTCTTCTTCTTGCCCATGGCCCGGCGCAGCAGG 170278 Query 39876 TCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGG 39935 ||||||| || ||| |||| || |||| || ||| || | || | ||| || ||||| Sbjct 170279 TCGGCCTCGCCCAGGCTGTAGCCCGCCAGGATCTGGGCGATCTGCATCACCTGTTCCTGA 170338 Query 39936 TAGATGATGA 39945 |||| ||||| Sbjct 170339 TAGACGATGA 170348 >seq9689 Length=17130 Score = 188 bits (208), Expect = 2e-43 Identities = 220/295 (75%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 40739 CCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCG 40796 ||||||||| || | |||||| | |||||||||| | || || | ||| ||||||| Sbjct 9320 CCCGTACTTGCGCGCGACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCG 9263 Query 40797 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40856 ||||||| |||||||| |||||||| ||||| || ||||| |||||||| | || | Sbjct 9262 ATGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAATCGCTCGAACAGCAGGTTG 9203 Query 40857 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40916 | | ||||||||| || ||||||||| || | | || |||||||||||||| | Sbjct 9202 TACGGCAGCGGGTCCAGATCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 9143 Query 40917 GAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40976 || || || || ||||||| | | ||| | | ||| |||| |||||||||| || Sbjct 9142 GAACCACGGCCCGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 9083 Query 40977 ACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 41031 |||| |||||||| |||||||||||||| |||||| ||| || |||| ||| Sbjct 9082 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 9028 Score = 125 bits (138), Expect = 2e-24 Identities = 224/324 (69%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 39625 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGC 39684 |||||| |||| ||||||||| |||| || |||||||| |||||||||||| || Sbjct 10443 CCGAGGACAGCGTGGCCGCCATGAACTCAGCCGGGTAGTGGCGCTTCAGCCACGCGGTCT 10384 Query 39685 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACG 39744 |||| || ||| | || || || | ||||| |||||||||| |||| || |||||| Sbjct 10383 GGTAGCTGACCAGTGCATAGGCAGCGGCGTGCGACTTGTTGAAGCCGTAACCGGCGAACT 10324 Query 39745 GGACCAGCACGTCCCACACTGCCTGG---ATGGCACCGTCCGAGTAGCCTCGCTCGCGCG 39801 ||| || ||| | | || | | |||| ||||| | | || || | || Sbjct 10323 TCTCCATCAGGTCGAAGATCGCATCGGCCTTGGCTTCGTCC--ACACCGTC-CTTGGCCG 10267 Query 39802 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCG 39861 | || | ||||| || || | |||||||| | | ||| |||||||||||||| Sbjct 10266 CACCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCATCG 10207 Query 39862 CCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCT 39921 | ||||| ||||||||||| || || | ||| ||| | | || ||| || | || | Sbjct 10206 CGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCA 10147 Query 39922 GCACTTGCTCCTGGTAGATGATGA 39945 ||| ||||||||||| | |||| Sbjct 10146 TCACCTGCTCCTGGTACACCATGA 10123 >seq9683 Length=137075 Score = 174 bits (192), Expect = 5e-39 Identities = 186/243 (77%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| | Sbjct 109569 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 109510 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || || ||||||||||| ||||| |||||| ||| |||||||| |||||||| || Sbjct 109509 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 109450 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC-GCCGTTCTCCTTCGCCCAGCGGATGA 40968 ||| | || || || || || || | | ||| |||||| ||| ||||| ||||| Sbjct 109449 GGCGCCCGATCCGCGGCCCGGACCCA-CGGGACAGCCGTTGAGCTTGGCCCACTTGATGA 109391 Query 40969 AGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGT 41028 |||| | |||| ||||||||| ||| |||||||||| || ||| || |||||||| Sbjct 109390 AGTCGCCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 109331 Query 41029 ACT 41031 ||| Sbjct 109330 ACT 109328 >seq9026 Length=54586 Score = 158 bits (174), Expect = 4e-34 Identities = 210/290 (72%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 40763 GATCACCTCGCCACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACG 40820 ||||||||| | |||||| | | || |||||||| ||||| |||||||| || || Sbjct 21732 GATCACCTCTTCGCGACGCTCCTGGCA--GAAGTCGACGTCGAAGTCGGGCATCGAAACC 21789 Query 40821 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTG 40880 || ||||| || |||||||||||||| | || || ||||||||| ||||||||| Sbjct 21790 CGTTCGGGATTGAGGAACCGCTCGAACAGCAGACCAAAGCGCAGCGGGTCCAGGTCGGTG 21849 Query 40881 ATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAG 40940 || || || ||||||||||||| ||||| | ||||| || || |||||||| Sbjct 21850 ATGGTCAGTACCCAGGCGACCAGCGACCCGGCGCCCGAGCCCCGTCCGGGGCCGACGGGA 21909 Query 40941 ACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAG 41000 | |||| | |||| |||| |||||| |||| |||| |||||||| |||||| Sbjct 21910 ATACCGTGCGCCTTACCCCATTTGATGAAATCCGACACGATCAGGAAGTAGCCGGGGAAG 21969 Query 41001 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTC 41050 ||||||| ||| ||| ||| |||| | | |||| | || | || ||| Sbjct 21970 CCCATCTTCTCGATGATGCCGAGCTCGAAATCGAGCCGTTTCCAGTACTC 22019 >seq6714 Length=1758414 Score = 141 bits (156), Expect = 3e-29 Identities = 227/320 (71%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATCACCTCGCCAC 40776 |||||| |||||| |||| ||||| || | || ||||| |||||||||| | | Sbjct 59298 GATCTGTCCGACCTGGTCGCGGCCGTATTTG-GCCTGTACGTAGCGGATCACCTCTTCGC 59356 Query 40777 GACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAG 40834 | || || | || |||||||||||||| |||||||| || ||||| ||||| || || Sbjct 59357 GGCGATCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGGTCGGGATTAAG 59414 Query 40835 GAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA 40894 ||| |||||||| | ||| | |||||| |||| |||||||| || |||| Sbjct 59415 GAAGCGCTCGAACAGCAGCGAGAAGCGCAGCGGATCGACATCGGTGATGAGAAGCGCGTA 59474 Query 40895 GGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTT 40954 ||| ||||||||||| || | ||||| || || |||||||| | | | | | ||| Sbjct 59475 GGCAACCAGCGAACCCGCACCCGAGCCACGGCCCGGGCCGACAGGAATGTCATGTTGCTT 59534 Query 40955 CGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT---CTGGAT 41011 ||||| ||||||||||| |||| ||||| || ||||| ||| |||||| Sbjct 59535 GGCCCATTTGATGAAGTCCGACACGATCAGGAAATAGCCGGGGAACTTCATGCGCTGGAT 59594 Query 41012 GATCATGTCGATCTCGTACT 41031 | ||| |||||||| ||| Sbjct 59595 G---ATGCCGATCTCGAACT 59611 >seq7278 Length=293576 Score = 123 bits (136), Expect = 8e-24 Identities = 236/343 (69%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 40651 AGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGT 40710 ||||| | |||||||||||| | |||| || ||| ||||||| | | ||| Sbjct 266443 AGGGCATTTCCAGCACGCGGCCGACGTCGCGCAAAGCGGCACGCGCCTGCAGCGAACCGA 266502 Query 40711 ACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATCACC 40769 | || ||||||||| |||| || || || || | || || || |||||||| Sbjct 266503 AGGTGATGATCTGCGCCACCTGCTCACGGCCATA-TTTGGCCTGCACATAGCGGATCACC 266561 Query 40770 TCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGG 40827 || | || || || | || ||||||||| |||| |||||||| || ||||| || | Sbjct 266562 TCCTCGCGGCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGATACGCGTTCAG 266619 Query 40828 GGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGA 40887 | || ||||| || ||||| | ||| | |||||| |||| |||||||||| | Sbjct 266620 GATTGAGGAAGCGTTCGAATAGCAGCGAGAAACGCAGCGGATCGACGTCGGTGATCGTCA 266679 Query 40888 GGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGT 40947 | | || ||||| ||||| ||||| | || || || || ||||| ||| | | | | Sbjct 266680 GCGCATAAGCGACGAGCGAGCCGGCACCCGAACCACGGCCCGGGCCAACCGGAATGTCAT 266739 Query 40948 TCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40990 || ||| ||||| ||||||||| || |||| |||||| || Sbjct 266740 GCTGCTTGGCCCATTTGATGAAGTCGGCAACGATGAGGAAATA 266782 >seq4285 Length=661 Score = 96.9 bits (106), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 39814 AGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCA 39873 |||||||| | |||||||| |||||| ||||||||||||||| |||||||| |||| Sbjct 425 AGTTCACGG--TGCTTGGCCATTTCCTCGGCCTTCTTCTTGCCCATGGCCCGGCGCAGCA 482 Query 39874 GGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCT 39933 |||||| ||| || | ||| || | || ||||| || | || | ||| ||||||| Sbjct 483 AGTCGGCGCCACCCAGCGAGTAGCCACCGATCACCTGCGCCATCTGCATCACCTGCTCCT 542 Query 39934 GGTAGATGATGA 39945 |||||| |||| Sbjct 543 GGTAGACCATGA 554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164815321525612