Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021304.1
Length=51552
Score E
Sequences producing significant alignments: (Bits) Value
seq11548 201 4e-47
seq7823 190 7e-44
seq9689 188 2e-43
seq9683 174 5e-39
seq9026 158 4e-34
seq6714 141 3e-29
seq7278 123 8e-24
seq4285 96.9 1e-15
>seq11548
Length=62939
Score = 201 bits (222), Expect = 4e-47
Identities = 267/371 (72%), Gaps = 0/371 (0%)
Strand=Plus/Minus
Query 40661 CAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGAT 40720
|| ||||||| | | |||||||| | || ||| ||||| | ||| | || |||
Sbjct 8287 CATCACGCGGCCAGTGTCCTTCAGCACGGCGCGGGCCTTCAATTTACCGAAGGTGATGAT 8228
Query 40721 CTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACG 40780
||| ||||| | |||| || || ||| | || || ||||||||||||| || ||
Sbjct 8227 CTGGGCGACATGGTCGCTGCCATATTTCTGCTGCACATAGCGGATCACCTCGCCGCGCCG 8168
Query 40781 CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCG 40840
| || ||||||||| |||| ||||||||||| ||||| || ||||||||||| ||
Sbjct 8167 CGTTTCGCAGAAGTCGATATCGAAGTCGGGCATGGAAACGCGTTCCGGGTTCAGGAAGCG 8108
Query 40841 CTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGAC 40900
|||||| | || || | | |||||||||||| || ||||| || | |||||||
Sbjct 8107 CTCGAACAGCAGGCCCAGTTGCAGCGGGTCGAGATCAGTGATGGTCAGCGCCCAGGCGAC 8048
Query 40901 CAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCA 40960
|||||| ||||| | || || || || || || ||| | | | ||||| |||||
Sbjct 8047 CAGCGATCCGGCACCCGAACCACGGCCCGGACCCACCGGAATATCATGATCCTTGGCCCA 7988
Query 40961 GCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTC 41020
||||||||| || |||| |||||||| |||||||||||||||||||| |||||
Sbjct 7987 TTTGATGAAGTCGGCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTGGATGATGATGTC 7928
Query 41021 GATCTCGTACT 41031
|| ||| |||
Sbjct 7927 CATTTCGAACT 7917
>seq7823
Length=199163
Score = 190 bits (210), Expect = 7e-44
Identities = 233/314 (74%), Gaps = 8/314 (3%)
Strand=Plus/Plus
Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTT--CCGGGTGACGTACTGGATCACCTCGCCA 40775
|||||| |||||| |||| | |||||||| || || ||||| ||| ||||| |
Sbjct 171076 GATCTGGGCGACCCGGTCGTCGCCGTACTTGTCCTGG--ACGTAGGCGATGACCTCTTCG 171133
Query 40776 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40833
|| || || | || |||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 171134 CGGCGTTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCA 171191
Query 40834 GGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40893
||||||||||||| | || ||| | |||||| ||||| | |||||| ||| |||
Sbjct 171192 GGAACCGCTCGAACAGCAGGCCGAACCGCAGCGGATCGAGATTGGTGATGGTCAGGGCGT 171251
Query 40894 AGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCT 40953
|||||||||| || ||||| | || || ||||| || || || || ||||| ||
Sbjct 171252 AGGCGACCAGAGAGCCGGCGCCCGAACCCCGCCCGGGCCCCACGGGGATGCCGTGGGTCT 171311
Query 40954 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGA 41013
| ||||| ||||||||||| |||| |||||||| || |||||||||| ||
Sbjct 171312 TGGCCCACTTGATGAAGTCCGAAACGATCAGGAAGTAACCGGGAAAGCCCATCTTCTGGA 171371
Query 41014 TCATGTCGATCTCG 41027
| | ||||||||||
Sbjct 171372 TGACGTCGATCTCG 171385
Score = 96.9 bits (106), Expect = 1e-15
Identities = 210/310 (68%), Gaps = 6/310 (2%)
Strand=Plus/Plus
Query 39639 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39698
|| |||| | ||||| | || || || ||||| ||| |||| | |||| ||| ||
Sbjct 170042 GCGGCCAGGAACTCGACCGGCGCGTTCGCCTTCAACCAGCCCGTCTGATACGAGATCAGG 170101
Query 39699 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39758
|||| || || | ||||| ||||||||| ||||||| |||||| | ||| || ||
Sbjct 170102 GCGTAGGCGGCGGCGTGCGACTTGTTGAACCCGTAGCCGGCGAACTTGGCCACCAGTTCG 170161
Query 39759 CACA--CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCG-CTCCCTTCTGGAAG 39815
| | ||| | | ||| ||| || | | || | | ||| | ||| |||
Sbjct 170162 AAGATGCTGTCCGACTGGG--CGTTCG-GCACCCCCTTTTCAGCGGCGCCCGAGACGAAC 170218
Query 39816 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39875
| | || | | ||| |||| ||||||||||||||| |||||||| ||||||
Sbjct 170219 CTGGCCTTCTGCAGGTCCATCTCCTCCTTCTTCTTCTTGCCCATGGCCCGGCGCAGCAGG 170278
Query 39876 TCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGG 39935
||||||| || ||| |||| || |||| || ||| || | || | ||| || |||||
Sbjct 170279 TCGGCCTCGCCCAGGCTGTAGCCCGCCAGGATCTGGGCGATCTGCATCACCTGTTCCTGA 170338
Query 39936 TAGATGATGA 39945
|||| |||||
Sbjct 170339 TAGACGATGA 170348
>seq9689
Length=17130
Score = 188 bits (208), Expect = 2e-43
Identities = 220/295 (75%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 40739 CCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCG 40796
||||||||| || | |||||| | |||||||||| | || || | ||| |||||||
Sbjct 9320 CCCGTACTTGCGCGCGACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCG 9263
Query 40797 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40856
||||||| |||||||| |||||||| ||||| || ||||| |||||||| | || |
Sbjct 9262 ATGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAATCGCTCGAACAGCAGGTTG 9203
Query 40857 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40916
| | ||||||||| || ||||||||| || | | || |||||||||||||| |
Sbjct 9202 TACGGCAGCGGGTCCAGATCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 9143
Query 40917 GAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40976
|| || || || ||||||| | | ||| | | ||| |||| |||||||||| ||
Sbjct 9142 GAACCACGGCCCGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 9083
Query 40977 ACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 41031
|||| |||||||| |||||||||||||| |||||| ||| || |||| |||
Sbjct 9082 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 9028
Score = 125 bits (138), Expect = 2e-24
Identities = 224/324 (69%), Gaps = 6/324 (2%)
Strand=Plus/Minus
Query 39625 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGC 39684
|||||| |||| ||||||||| |||| || |||||||| |||||||||||| ||
Sbjct 10443 CCGAGGACAGCGTGGCCGCCATGAACTCAGCCGGGTAGTGGCGCTTCAGCCACGCGGTCT 10384
Query 39685 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACG 39744
|||| || ||| | || || || | ||||| |||||||||| |||| || ||||||
Sbjct 10383 GGTAGCTGACCAGTGCATAGGCAGCGGCGTGCGACTTGTTGAAGCCGTAACCGGCGAACT 10324
Query 39745 GGACCAGCACGTCCCACACTGCCTGG---ATGGCACCGTCCGAGTAGCCTCGCTCGCGCG 39801
||| || ||| | | || | | |||| ||||| | | || || | ||
Sbjct 10323 TCTCCATCAGGTCGAAGATCGCATCGGCCTTGGCTTCGTCC--ACACCGTC-CTTGGCCG 10267
Query 39802 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCG 39861
| || | ||||| || || | |||||||| | | ||| ||||||||||||||
Sbjct 10266 CACCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCATCG 10207
Query 39862 CCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCT 39921
| ||||| ||||||||||| || || | ||| ||| | | || ||| || | || |
Sbjct 10206 CGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCA 10147
Query 39922 GCACTTGCTCCTGGTAGATGATGA 39945
||| ||||||||||| | ||||
Sbjct 10146 TCACCTGCTCCTGGTACACCATGA 10123
>seq9683
Length=137075
Score = 174 bits (192), Expect = 5e-39
Identities = 186/243 (77%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849
|||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| |
Sbjct 109569 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 109510
Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909
|| || ||||||||||| ||||| |||||| ||| |||||||| |||||||| ||
Sbjct 109509 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 109450
Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC-GCCGTTCTCCTTCGCCCAGCGGATGA 40968
||| | || || || || || || | | ||| |||||| ||| ||||| |||||
Sbjct 109449 GGCGCCCGATCCGCGGCCCGGACCCA-CGGGACAGCCGTTGAGCTTGGCCCACTTGATGA 109391
Query 40969 AGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGT 41028
|||| | |||| ||||||||| ||| |||||||||| || ||| || ||||||||
Sbjct 109390 AGTCGCCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 109331
Query 41029 ACT 41031
|||
Sbjct 109330 ACT 109328
>seq9026
Length=54586
Score = 158 bits (174), Expect = 4e-34
Identities = 210/290 (72%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 40763 GATCACCTCGCCACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACG 40820
||||||||| | |||||| | | || |||||||| ||||| |||||||| || ||
Sbjct 21732 GATCACCTCTTCGCGACGCTCCTGGCA--GAAGTCGACGTCGAAGTCGGGCATCGAAACC 21789
Query 40821 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTG 40880
|| ||||| || |||||||||||||| | || || ||||||||| |||||||||
Sbjct 21790 CGTTCGGGATTGAGGAACCGCTCGAACAGCAGACCAAAGCGCAGCGGGTCCAGGTCGGTG 21849
Query 40881 ATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAG 40940
|| || || ||||||||||||| ||||| | ||||| || || ||||||||
Sbjct 21850 ATGGTCAGTACCCAGGCGACCAGCGACCCGGCGCCCGAGCCCCGTCCGGGGCCGACGGGA 21909
Query 40941 ACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAG 41000
| |||| | |||| |||| |||||| |||| |||| |||||||| ||||||
Sbjct 21910 ATACCGTGCGCCTTACCCCATTTGATGAAATCCGACACGATCAGGAAGTAGCCGGGGAAG 21969
Query 41001 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTC 41050
||||||| ||| ||| ||| |||| | | |||| | || | || |||
Sbjct 21970 CCCATCTTCTCGATGATGCCGAGCTCGAAATCGAGCCGTTTCCAGTACTC 22019
>seq6714
Length=1758414
Score = 141 bits (156), Expect = 3e-29
Identities = 227/320 (71%), Gaps = 12/320 (4%)
Strand=Plus/Plus
Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATCACCTCGCCAC 40776
|||||| |||||| |||| ||||| || | || ||||| |||||||||| | |
Sbjct 59298 GATCTGTCCGACCTGGTCGCGGCCGTATTTG-GCCTGTACGTAGCGGATCACCTCTTCGC 59356
Query 40777 GACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAG 40834
| || || | || |||||||||||||| |||||||| || ||||| ||||| || ||
Sbjct 59357 GGCGATCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGGTCGGGATTAAG 59414
Query 40835 GAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA 40894
||| |||||||| | ||| | |||||| |||| |||||||| || ||||
Sbjct 59415 GAAGCGCTCGAACAGCAGCGAGAAGCGCAGCGGATCGACATCGGTGATGAGAAGCGCGTA 59474
Query 40895 GGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTT 40954
||| ||||||||||| || | ||||| || || |||||||| | | | | | |||
Sbjct 59475 GGCAACCAGCGAACCCGCACCCGAGCCACGGCCCGGGCCGACAGGAATGTCATGTTGCTT 59534
Query 40955 CGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT---CTGGAT 41011
||||| ||||||||||| |||| ||||| || ||||| ||| ||||||
Sbjct 59535 GGCCCATTTGATGAAGTCCGACACGATCAGGAAATAGCCGGGGAACTTCATGCGCTGGAT 59594
Query 41012 GATCATGTCGATCTCGTACT 41031
| ||| |||||||| |||
Sbjct 59595 G---ATGCCGATCTCGAACT 59611
>seq7278
Length=293576
Score = 123 bits (136), Expect = 8e-24
Identities = 236/343 (69%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 40651 AGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGT 40710
||||| | |||||||||||| | |||| || ||| ||||||| | | |||
Sbjct 266443 AGGGCATTTCCAGCACGCGGCCGACGTCGCGCAAAGCGGCACGCGCCTGCAGCGAACCGA 266502
Query 40711 ACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATCACC 40769
| || ||||||||| |||| || || || || | || || || ||||||||
Sbjct 266503 AGGTGATGATCTGCGCCACCTGCTCACGGCCATA-TTTGGCCTGCACATAGCGGATCACC 266561
Query 40770 TCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGG 40827
|| | || || || | || ||||||||| |||| |||||||| || ||||| || |
Sbjct 266562 TCCTCGCGGCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGATACGCGTTCAG 266619
Query 40828 GGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGA 40887
| || ||||| || ||||| | ||| | |||||| |||| |||||||||| |
Sbjct 266620 GATTGAGGAAGCGTTCGAATAGCAGCGAGAAACGCAGCGGATCGACGTCGGTGATCGTCA 266679
Query 40888 GGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGT 40947
| | || ||||| ||||| ||||| | || || || || ||||| ||| | | | |
Sbjct 266680 GCGCATAAGCGACGAGCGAGCCGGCACCCGAACCACGGCCCGGGCCAACCGGAATGTCAT 266739
Query 40948 TCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40990
|| ||| ||||| ||||||||| || |||| |||||| ||
Sbjct 266740 GCTGCTTGGCCCATTTGATGAAGTCGGCAACGATGAGGAAATA 266782
>seq4285
Length=661
Score = 96.9 bits (106), Expect = 1e-15
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 39814 AGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCA 39873
|||||||| | |||||||| |||||| ||||||||||||||| |||||||| ||||
Sbjct 425 AGTTCACGG--TGCTTGGCCATTTCCTCGGCCTTCTTCTTGCCCATGGCCCGGCGCAGCA 482
Query 39874 GGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCT 39933
|||||| ||| || | ||| || | || ||||| || | || | ||| |||||||
Sbjct 483 AGTCGGCGCCACCCAGCGAGTAGCCACCGATCACCTGCGCCATCTGCATCACCTGCTCCT 542
Query 39934 GGTAGATGATGA 39945
|||||| ||||
Sbjct 543 GGTAGACCATGA 554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164815321525612
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