Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8995 127 6e-24 seq7683 86.0 2e-11 >seq8995 Length=8301158 Score = 127 bits (140), Expect = 6e-24 Identities = 378/570 (66%), Gaps = 16/570 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || | || | || ||||||||||||||||| ||| | | | Sbjct 6972248 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 6972189 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCC 133193 | |||||||| | || || || | ||||| ||| |||| |||||||||||| Sbjct 6972188 TCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGC--ACTGGGAAGCCC 6972131 Query 133194 TTACTGGGGATGAAAAACATTTTATTT-CTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | || || | | ||||||||| | ||| | | || || ||||| || |||||| Sbjct 6972130 TGAAGCCTGAGGAGAGATATTTTATTTCCCATG-TGCTGGCTTTCTTTGCAGCAAGTGAT 6972072 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 || || || |||||| || | ||||||| ||||||||| | |||| || Sbjct 6972071 GGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACCGAGGCT 6972012 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATTCTA 133370 | | || ||||| | || ||||| |||||||| || |||||| | ||| ||| Sbjct 6972011 CCTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTC 6971952 Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT- 133429 ||| ||||| |||||||| |||||| || | | | | || ||||| |||||| Sbjct 6971951 CTC--ATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTG 6971894 Query 133430 AG-CGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAA 133488 || ||| | |||||| | || ||||| | || ||||| | |||| |||||| Sbjct 6971893 AGACGA--TGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGGGGACAA 6971836 Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548 || | | || ||| | || || ||||||| ||| || ||||| || || Sbjct 6971835 AGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTC 6971776 Query 133549 TGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607 ||| | || ||| ||||| || ||||| || || || || | | ||||| || | Sbjct 6971775 CGGTTC-TTTTGCGTCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGT 6971717 Query 133608 TTTCTAACGAACTTATTTCAAGGGACGAGG 133637 |||| || ||||||||| || || |||| Sbjct 6971716 TTTCCAATGAACTTATTAGCAGAGATGAGG 6971687 >seq7683 Length=2286953 Score = 86.0 bits (94), Expect = 2e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || |||| || ||||| ||||| Sbjct 803846 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATCAGCCCCTCACGGCCCCCCATGGCATG 803905 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| || || || || Sbjct 803906 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCTCGGC 803964 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || ||| ||| | ||||| |||||||| | || || | || ||| Sbjct 803965 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGGGTTCGGTGCTTGAATCCAAATG 804024 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 804025 GGATCCGCTTGCCCTCCACGTTCTGCTGCCC 804055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471533622452883