Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 127 6e-24
seq7683 86.0 2e-11
>seq8995
Length=8301158
Score = 127 bits (140), Expect = 6e-24
Identities = 378/570 (66%), Gaps = 16/570 (3%)
Strand=Plus/Minus
Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135
||||| || || || || | || | || ||||||||||||||||| ||| | | |
Sbjct 6972248 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 6972189
Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCC 133193
| |||||||| | || || || | ||||| ||| |||| ||||||||||||
Sbjct 6972188 TCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGC--ACTGGGAAGCCC 6972131
Query 133194 TTACTGGGGATGAAAAACATTTTATTT-CTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252
| | || || | | ||||||||| | ||| | | || || ||||| || ||||||
Sbjct 6972130 TGAAGCCTGAGGAGAGATATTTTATTTCCCATG-TGCTGGCTTTCTTTGCAGCAAGTGAT 6972072
Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312
|| || || |||||| || | ||||||| ||||||||| | |||| ||
Sbjct 6972071 GGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACCGAGGCT 6972012
Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATTCTA 133370
| | || ||||| | || ||||| |||||||| || |||||| | ||| |||
Sbjct 6972011 CCTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTC 6971952
Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT- 133429
||| ||||| |||||||| |||||| || | | | | || ||||| ||||||
Sbjct 6971951 CTC--ATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTG 6971894
Query 133430 AG-CGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAA 133488
|| ||| | |||||| | || ||||| | || ||||| | |||| ||||||
Sbjct 6971893 AGACGA--TGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGGGGACAA 6971836
Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548
|| | | || ||| | || || ||||||| ||| || ||||| || ||
Sbjct 6971835 AGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTC 6971776
Query 133549 TGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607
||| | || ||| ||||| || ||||| || || || || | | ||||| || |
Sbjct 6971775 CGGTTC-TTTTGCGTCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGT 6971717
Query 133608 TTTCTAACGAACTTATTTCAAGGGACGAGG 133637
|||| || ||||||||| || || ||||
Sbjct 6971716 TTTCCAATGAACTTATTAGCAGAGATGAGG 6971687
>seq7683
Length=2286953
Score = 86.0 bits (94), Expect = 2e-11
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666
|||||| || || || |||||||| || || || || |||| || ||||| |||||
Sbjct 803846 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATCAGCCCCTCACGGCCCCCCATGGCATG 803905
Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725
|||||| | ||| || ||| || || | | ||||| |||| || || || ||
Sbjct 803906 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCTCGGC 803964
Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785
||| ||| || ||| ||| | ||||| |||||||| | || || | || |||
Sbjct 803965 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGGGTTCGGTGCTTGAATCCAAATG 804024
Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816
|||| ||||| || || ||||||||||| ||
Sbjct 804025 GGATCCGCTTGCCCTCCACGTTCTGCTGCCC 804055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471533622452883
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |