Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021339.1
Length=51077
Score E
Sequences producing significant alignments: (Bits) Value
seq11548 190 7e-44
seq7823 187 8e-43
seq9689 176 1e-39
seq9683 165 3e-36
seq9026 149 2e-31
seq6714 141 3e-29
seq4285 104 8e-18
>seq11548
Length=62939
Score = 190 bits (210), Expect = 7e-44
Identities = 263/368 (71%), Gaps = 0/368 (0%)
Strand=Plus/Minus
Query 40124 CACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTG 40183
|||||| | | |||||||| | || ||| ||||| | ||| | || ||||||
Sbjct 8284 CACGCGGCCAGTGTCCTTCAGCACGGCGCGGGCCTTCAATTTACCGAAGGTGATGATCTG 8225
Query 40184 CGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCG 40243
||||| | |||| || || ||| | || || |||| |||||||| || |||
Sbjct 8224 GGCGACATGGTCGCTGCCATATTTCTGCTGCACATAGCGGATCACCTCGCCGCGCCGCGT 8165
Query 40244 GTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTC 40303
|| ||||||||| |||| ||||||||||| ||||| || |||||||||||||||||
Sbjct 8164 TTCGCAGAAGTCGATATCGAAGTCGGGCATGGAAACGCGTTCCGGGTTCAGGAAGCGCTC 8105
Query 40304 GAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAG 40363
||| | || || | | |||||||||||| || ||||| || | ||||||||||
Sbjct 8104 GAACAGCAGGCCCAGTTGCAGCGGGTCGAGATCAGTGATGGTCAGCGCCCAGGCGACCAG 8045
Query 40364 CGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCG 40423
||| ||||| | || || || || || || ||| | | | ||||| |||||
Sbjct 8044 CGATCCGGCACCCGAACCACGGCCCGGACCCACCGGAATATCATGATCCTTGGCCCATTT 7985
Query 40424 GATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGAT 40483
||||||||| || |||| |||||||| ||||| |||||||||||||| ||||| ||
Sbjct 7984 GATGAAGTCGGCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTGGATGATGATGTCCAT 7925
Query 40484 CTCGTACT 40491
||| |||
Sbjct 7924 TTCGAACT 7917
>seq7823
Length=199163
Score = 187 bits (206), Expect = 8e-43
Identities = 232/314 (74%), Gaps = 8/314 (3%)
Strand=Plus/Plus
Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTT--CCGGGTGACGTACTGGATGACCTCGCCA 40235
|||||| |||||| |||| | |||||||| || || ||||| ||||||||| |
Sbjct 171076 GATCTGGGCGACCCGGTCGTCGCCGTACTTGTCCTGG--ACGTAGGCGATGACCTCTTCG 171133
Query 40236 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40293
|| || || | || |||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 171134 CGGCGTTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCA 171191
Query 40294 GGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40353
|||| |||||||| | || ||| | |||||| ||||| | |||||| ||| |||
Sbjct 171192 GGAACCGCTCGAACAGCAGGCCGAACCGCAGCGGATCGAGATTGGTGATGGTCAGGGCGT 171251
Query 40354 AGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCT 40413
|||||||||| || ||||| | || |||||||| || || || || |||| ||
Sbjct 171252 AGGCGACCAGAGAGCCGGCGCCCGAACCCCGCCCGGGCCCCACGGGGATGCCGTGGGTCT 171311
Query 40414 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGA 40473
| ||||| ||||||||||| |||| |||||||| || || ||||||| ||
Sbjct 171312 TGGCCCACTTGATGAAGTCCGAAACGATCAGGAAGTAACCGGGAAAGCCCATCTTCTGGA 171371
Query 40474 TCATGTCGATCTCG 40487
| | ||||||||||
Sbjct 171372 TGACGTCGATCTCG 171385
Score = 105 bits (116), Expect = 2e-18
Identities = 211/308 (69%), Gaps = 6/308 (2%)
Strand=Plus/Plus
Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158
|| |||| | ||||| |||| || || ||||||||| |||| | |||| ||| ||
Sbjct 170042 GCGGCCAGGAACTCGACCGGCGCGTTCGCCTTCAACCAGCCCGTCTGATACGAGATCAGG 170101
Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218
|||| || || | ||||| ||||||||| ||||||| ||||| | ||| || ||
Sbjct 170102 GCGTAGGCGGCGGCGTGCGACTTGTTGAACCCGTAGCCGGCGAACTTGGCCACCAGTTCG 170161
Query 39219 CACA--CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCG-CTCCCTTCTGGAAG 39275
| | ||| | | ||| ||| || | | || | | ||| | ||| |||
Sbjct 170162 AAGATGCTGTCCGACTGGG--CGTTCG-GCACCCCCTTTTCAGCGGCGCCCGAGACGAAC 170218
Query 39276 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39335
| | || | | ||| |||| ||||||||||||||| |||||||| ||||||
Sbjct 170219 CTGGCCTTCTGCAGGTCCATCTCCTCCTTCTTCTTCTTGCCCATGGCCCGGCGCAGCAGG 170278
Query 39336 TCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGG 39395
||||||| |||||| |||| || |||| || ||| || | || | |||||| |||||
Sbjct 170279 TCGGCCTCGCCCAGGCTGTAGCCCGCCAGGATCTGGGCGATCTGCATCACCTGTTCCTGA 170338
Query 39396 TAGATGAT 39403
|||| |||
Sbjct 170339 TAGACGAT 170346
>seq9689
Length=17130
Score = 176 bits (194), Expect = 1e-39
Identities = 217/295 (74%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 40199 CCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCG 40256
||||||||| || | |||||| | ||| |||||| | || || | ||| |||||||
Sbjct 9320 CCCGTACTTGCGCGCGACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCG 9263
Query 40257 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCG 40316
||||||| |||||||| |||||||| ||||| || ||||| |||||||| | || |
Sbjct 9262 ATGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAATCGCTCGAACAGCAGGTTG 9203
Query 40317 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40376
| | ||||||||| || ||||||||| || | | || |||||||||||||| |
Sbjct 9202 TACGGCAGCGGGTCCAGATCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 9143
Query 40377 GAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40436
|| || || || ||||||| | | || | | ||| |||| |||||||||| ||
Sbjct 9142 GAACCACGGCCCGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 9083
Query 40437 ACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACT 40491
|||| |||||||| |||||| ||||||| |||||| ||| || |||| |||
Sbjct 9082 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 9028
Score = 129 bits (142), Expect = 2e-25
Identities = 220/316 (70%), Gaps = 6/316 (2%)
Strand=Plus/Minus
Query 39085 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGC 39144
|||||| |||| ||||||||| |||| ||||||||||| ||||| |||||| ||
Sbjct 10443 CCGAGGACAGCGTGGCCGCCATGAACTCAGCCGGGTAGTGGCGCTTCAGCCACGCGGTCT 10384
Query 39145 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGG 39204
|||| || ||| | || || || | ||||| |||||||||| |||| || |||||
Sbjct 10383 GGTAGCTGACCAGTGCATAGGCAGCGGCGTGCGACTTGTTGAAGCCGTAACCGGCGAACT 10324
Query 39205 GGACCAGCACGTCCCACACTGCCTGG---ATGGCACCGTCCGAGTAGCCTCGCTCGCGCG 39261
||| || ||| | | || | | |||| ||||| | | || || | ||
Sbjct 10323 TCTCCATCAGGTCGAAGATCGCATCGGCCTTGGCTTCGTCC--ACACCGTC-CTTGGCCG 10267
Query 39262 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCG 39321
| || | ||||| || || | |||||||| | | ||| ||||||||||||||
Sbjct 10266 CACCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCATCG 10207
Query 39322 CCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCT 39381
| ||||| ||||||||||| ||||| | ||| ||| | | || ||| || | || |
Sbjct 10206 CGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCA 10147
Query 39382 GCACCTGCTCCTGGTA 39397
|||||||||||||||
Sbjct 10146 TCACCTGCTCCTGGTA 10131
>seq9683
Length=137075
Score = 165 bits (182), Expect = 3e-36
Identities = 184/243 (76%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309
|||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| |
Sbjct 109569 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 109510
Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369
|| || ||||||||||| ||||| |||||| ||| |||||||| |||||||| ||
Sbjct 109509 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 109450
Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGAC-CCCGTTCTCCTTCGCCCAGCGGATGA 40428
||| | || || || || || || | | ||| ||||| ||| ||||| |||||
Sbjct 109449 GGCGCCCGATCCGCGGCCCGGACCCA-CGGGACAGCCGTTGAGCTTGGCCCACTTGATGA 109391
Query 40429 AGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGT 40488
|||| | |||| ||||||||| ||| || ||||||| || ||| || ||||||||
Sbjct 109390 AGTCGCCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 109331
Query 40489 ACT 40491
|||
Sbjct 109330 ACT 109328
>seq9026
Length=54586
Score = 149 bits (164), Expect = 2e-31
Identities = 208/290 (72%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 40223 GATGACCTCGCCACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACG 40280
||| ||||| | |||||| | | || |||||||| ||||| |||||||| || ||
Sbjct 21732 GATCACCTCTTCGCGACGCTCCTGGCA--GAAGTCGACGTCGAAGTCGGGCATCGAAACC 21789
Query 40281 CGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTG 40340
|| ||||| || ||||| |||||||| | || || ||||||||| |||||||||
Sbjct 21790 CGTTCGGGATTGAGGAACCGCTCGAACAGCAGACCAAAGCGCAGCGGGTCCAGGTCGGTG 21849
Query 40341 ATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAG 40400
|| || || ||||||||||||| ||||| | |||||||| || ||||||||
Sbjct 21850 ATGGTCAGTACCCAGGCGACCAGCGACCCGGCGCCCGAGCCCCGTCCGGGGCCGACGGGA 21909
Query 40401 ACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAC 40460
| |||| | |||| |||| |||||| |||| |||| |||||||| |||||
Sbjct 21910 ATACCGTGCGCCTTACCCCATTTGATGAAATCCGACACGATCAGGAAGTAGCCGGGGAAG 21969
Query 40461 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTC 40510
||||||| ||| ||| ||| |||| | | |||| | || | || |||
Sbjct 21970 CCCATCTTCTCGATGATGCCGAGCTCGAAATCGAGCCGTTTCCAGTACTC 22019
Score = 80.6 bits (88), Expect = 9e-11
Identities = 77/99 (78%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 39305 CTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCAT 39364
||||||||||||||| || ||||| || |||||||| | |||||| |||| || ||||
Sbjct 20859 CTTCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCTTCGCCCAGGCTGTAGCCCGCCAG 20918
Query 39365 GACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403
| ||| || | || | |||||| ||||| |||| |||
Sbjct 20919 AATCTGGGCGATCTGCATCACCTGTTCCTGATAGACGAT 20957
>seq6714
Length=1758414
Score = 141 bits (156), Expect = 3e-29
Identities = 227/320 (71%), Gaps = 12/320 (4%)
Strand=Plus/Plus
Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATGACCTCGCCAC 40236
|||||| |||||| |||| ||||| || | || ||||| |||| ||||| | |
Sbjct 59298 GATCTGTCCGACCTGGTCGCGGCCGTATTTG-GCCTGTACGTAGCGGATCACCTCTTCGC 59356
Query 40237 GACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAG 40294
| || || | || |||||||||||||| |||||||| || ||||| ||||| || ||
Sbjct 59357 GGCGATCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGGTCGGGATTAAG 59414
Query 40295 GAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA 40354
|||||||||||| | ||| | |||||| |||| |||||||| || ||||
Sbjct 59415 GAAGCGCTCGAACAGCAGCGAGAAGCGCAGCGGATCGACATCGGTGATGAGAAGCGCGTA 59474
Query 40355 GGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTT 40414
||| ||||||||||| || | ||||| || || |||||||| | | | | |||
Sbjct 59475 GGCAACCAGCGAACCCGCACCCGAGCCACGGCCCGGGCCGACAGGAATGTCATGTTGCTT 59534
Query 40415 CGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT---CTGGAT 40471
||||| ||||||||||| |||| ||||| || |||||| ||| ||||||
Sbjct 59535 GGCCCATTTGATGAAGTCCGACACGATCAGGAAATAGCCGGGGAACTTCATGCGCTGGAT 59594
Query 40472 GATCATGTCGATCTCGTACT 40491
| ||| |||||||| |||
Sbjct 59595 G---ATGCCGATCTCGAACT 59611
>seq4285
Length=661
Score = 104 bits (114), Expect = 8e-18
Identities = 99/126 (79%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 39274 AGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCA 39333
|||||||| | |||||||| |||||| ||||||||||||||| |||||||| ||||
Sbjct 425 AGTTCACGG--TGCTTGGCCATTTCCTCGGCCTTCTTCTTGCCCATGGCCCGGCGCAGCA 482
Query 39334 GGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCT 39393
|||||| |||||| | ||| || | || ||||| || | || | |||||||||||
Sbjct 483 AGTCGGCGCCACCCAGCGAGTAGCCACCGATCACCTGCGCCATCTGCATCACCTGCTCCT 542
Query 39394 GGTAGA 39399
||||||
Sbjct 543 GGTAGA 548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163295593340562
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