Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq11548 190 7e-44 seq7823 187 8e-43 seq9689 176 1e-39 seq9683 165 3e-36 seq9026 149 2e-31 seq6714 141 3e-29 seq4285 104 8e-18 >seq11548 Length=62939 Score = 190 bits (210), Expect = 7e-44 Identities = 263/368 (71%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 40124 CACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTG 40183 |||||| | | |||||||| | || ||| ||||| | ||| | || |||||| Sbjct 8284 CACGCGGCCAGTGTCCTTCAGCACGGCGCGGGCCTTCAATTTACCGAAGGTGATGATCTG 8225 Query 40184 CGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCG 40243 ||||| | |||| || || ||| | || || |||| |||||||| || ||| Sbjct 8224 GGCGACATGGTCGCTGCCATATTTCTGCTGCACATAGCGGATCACCTCGCCGCGCCGCGT 8165 Query 40244 GTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTC 40303 || ||||||||| |||| ||||||||||| ||||| || ||||||||||||||||| Sbjct 8164 TTCGCAGAAGTCGATATCGAAGTCGGGCATGGAAACGCGTTCCGGGTTCAGGAAGCGCTC 8105 Query 40304 GAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAG 40363 ||| | || || | | |||||||||||| || ||||| || | |||||||||| Sbjct 8104 GAACAGCAGGCCCAGTTGCAGCGGGTCGAGATCAGTGATGGTCAGCGCCCAGGCGACCAG 8045 Query 40364 CGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCG 40423 ||| ||||| | || || || || || || ||| | | | ||||| ||||| Sbjct 8044 CGATCCGGCACCCGAACCACGGCCCGGACCCACCGGAATATCATGATCCTTGGCCCATTT 7985 Query 40424 GATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGAT 40483 ||||||||| || |||| |||||||| ||||| |||||||||||||| ||||| || Sbjct 7984 GATGAAGTCGGCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTGGATGATGATGTCCAT 7925 Query 40484 CTCGTACT 40491 ||| ||| Sbjct 7924 TTCGAACT 7917 >seq7823 Length=199163 Score = 187 bits (206), Expect = 8e-43 Identities = 232/314 (74%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTT--CCGGGTGACGTACTGGATGACCTCGCCA 40235 |||||| |||||| |||| | |||||||| || || ||||| ||||||||| | Sbjct 171076 GATCTGGGCGACCCGGTCGTCGCCGTACTTGTCCTGG--ACGTAGGCGATGACCTCTTCG 171133 Query 40236 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40293 || || || | || |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 171134 CGGCGTTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCA 171191 Query 40294 GGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40353 |||| |||||||| | || ||| | |||||| ||||| | |||||| ||| ||| Sbjct 171192 GGAACCGCTCGAACAGCAGGCCGAACCGCAGCGGATCGAGATTGGTGATGGTCAGGGCGT 171251 Query 40354 AGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCT 40413 |||||||||| || ||||| | || |||||||| || || || || |||| || Sbjct 171252 AGGCGACCAGAGAGCCGGCGCCCGAACCCCGCCCGGGCCCCACGGGGATGCCGTGGGTCT 171311 Query 40414 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGA 40473 | ||||| ||||||||||| |||| |||||||| || || ||||||| || Sbjct 171312 TGGCCCACTTGATGAAGTCCGAAACGATCAGGAAGTAACCGGGAAAGCCCATCTTCTGGA 171371 Query 40474 TCATGTCGATCTCG 40487 | | |||||||||| Sbjct 171372 TGACGTCGATCTCG 171385 Score = 105 bits (116), Expect = 2e-18 Identities = 211/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158 || |||| | ||||| |||| || || ||||||||| |||| | |||| ||| || Sbjct 170042 GCGGCCAGGAACTCGACCGGCGCGTTCGCCTTCAACCAGCCCGTCTGATACGAGATCAGG 170101 Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218 |||| || || | ||||| ||||||||| ||||||| ||||| | ||| || || Sbjct 170102 GCGTAGGCGGCGGCGTGCGACTTGTTGAACCCGTAGCCGGCGAACTTGGCCACCAGTTCG 170161 Query 39219 CACA--CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCG-CTCCCTTCTGGAAG 39275 | | ||| | | ||| ||| || | | || | | ||| | ||| ||| Sbjct 170162 AAGATGCTGTCCGACTGGG--CGTTCG-GCACCCCCTTTTCAGCGGCGCCCGAGACGAAC 170218 Query 39276 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39335 | | || | | ||| |||| ||||||||||||||| |||||||| |||||| Sbjct 170219 CTGGCCTTCTGCAGGTCCATCTCCTCCTTCTTCTTCTTGCCCATGGCCCGGCGCAGCAGG 170278 Query 39336 TCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGG 39395 ||||||| |||||| |||| || |||| || ||| || | || | |||||| ||||| Sbjct 170279 TCGGCCTCGCCCAGGCTGTAGCCCGCCAGGATCTGGGCGATCTGCATCACCTGTTCCTGA 170338 Query 39396 TAGATGAT 39403 |||| ||| Sbjct 170339 TAGACGAT 170346 >seq9689 Length=17130 Score = 176 bits (194), Expect = 1e-39 Identities = 217/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 40199 CCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCG 40256 ||||||||| || | |||||| | ||| |||||| | || || | ||| ||||||| Sbjct 9320 CCCGTACTTGCGCGCGACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCG 9263 Query 40257 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCG 40316 ||||||| |||||||| |||||||| ||||| || ||||| |||||||| | || | Sbjct 9262 ATGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAATCGCTCGAACAGCAGGTTG 9203 Query 40317 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40376 | | ||||||||| || ||||||||| || | | || |||||||||||||| | Sbjct 9202 TACGGCAGCGGGTCCAGATCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 9143 Query 40377 GAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40436 || || || || ||||||| | | || | | ||| |||| |||||||||| || Sbjct 9142 GAACCACGGCCCGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 9083 Query 40437 ACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACT 40491 |||| |||||||| |||||| ||||||| |||||| ||| || |||| ||| Sbjct 9082 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 9028 Score = 129 bits (142), Expect = 2e-25 Identities = 220/316 (70%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 39085 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGC 39144 |||||| |||| ||||||||| |||| ||||||||||| ||||| |||||| || Sbjct 10443 CCGAGGACAGCGTGGCCGCCATGAACTCAGCCGGGTAGTGGCGCTTCAGCCACGCGGTCT 10384 Query 39145 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGG 39204 |||| || ||| | || || || | ||||| |||||||||| |||| || ||||| Sbjct 10383 GGTAGCTGACCAGTGCATAGGCAGCGGCGTGCGACTTGTTGAAGCCGTAACCGGCGAACT 10324 Query 39205 GGACCAGCACGTCCCACACTGCCTGG---ATGGCACCGTCCGAGTAGCCTCGCTCGCGCG 39261 ||| || ||| | | || | | |||| ||||| | | || || | || Sbjct 10323 TCTCCATCAGGTCGAAGATCGCATCGGCCTTGGCTTCGTCC--ACACCGTC-CTTGGCCG 10267 Query 39262 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCG 39321 | || | ||||| || || | |||||||| | | ||| |||||||||||||| Sbjct 10266 CACCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCATCG 10207 Query 39322 CCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCT 39381 | ||||| ||||||||||| ||||| | ||| ||| | | || ||| || | || | Sbjct 10206 CGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCA 10147 Query 39382 GCACCTGCTCCTGGTA 39397 ||||||||||||||| Sbjct 10146 TCACCTGCTCCTGGTA 10131 >seq9683 Length=137075 Score = 165 bits (182), Expect = 3e-36 Identities = 184/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| | Sbjct 109569 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 109510 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || || ||||||||||| ||||| |||||| ||| |||||||| |||||||| || Sbjct 109509 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 109450 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGAC-CCCGTTCTCCTTCGCCCAGCGGATGA 40428 ||| | || || || || || || | | ||| ||||| ||| ||||| ||||| Sbjct 109449 GGCGCCCGATCCGCGGCCCGGACCCA-CGGGACAGCCGTTGAGCTTGGCCCACTTGATGA 109391 Query 40429 AGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGT 40488 |||| | |||| ||||||||| ||| || ||||||| || ||| || |||||||| Sbjct 109390 AGTCGCCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 109331 Query 40489 ACT 40491 ||| Sbjct 109330 ACT 109328 >seq9026 Length=54586 Score = 149 bits (164), Expect = 2e-31 Identities = 208/290 (72%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 40223 GATGACCTCGCCACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACG 40280 ||| ||||| | |||||| | | || |||||||| ||||| |||||||| || || Sbjct 21732 GATCACCTCTTCGCGACGCTCCTGGCA--GAAGTCGACGTCGAAGTCGGGCATCGAAACC 21789 Query 40281 CGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTG 40340 || ||||| || ||||| |||||||| | || || ||||||||| ||||||||| Sbjct 21790 CGTTCGGGATTGAGGAACCGCTCGAACAGCAGACCAAAGCGCAGCGGGTCCAGGTCGGTG 21849 Query 40341 ATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAG 40400 || || || ||||||||||||| ||||| | |||||||| || |||||||| Sbjct 21850 ATGGTCAGTACCCAGGCGACCAGCGACCCGGCGCCCGAGCCCCGTCCGGGGCCGACGGGA 21909 Query 40401 ACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAC 40460 | |||| | |||| |||| |||||| |||| |||| |||||||| ||||| Sbjct 21910 ATACCGTGCGCCTTACCCCATTTGATGAAATCCGACACGATCAGGAAGTAGCCGGGGAAG 21969 Query 40461 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTC 40510 ||||||| ||| ||| ||| |||| | | |||| | || | || ||| Sbjct 21970 CCCATCTTCTCGATGATGCCGAGCTCGAAATCGAGCCGTTTCCAGTACTC 22019 Score = 80.6 bits (88), Expect = 9e-11 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 39305 CTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCAT 39364 ||||||||||||||| || ||||| || |||||||| | |||||| |||| || |||| Sbjct 20859 CTTCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCTTCGCCCAGGCTGTAGCCCGCCAG 20918 Query 39365 GACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 | ||| || | || | |||||| ||||| |||| ||| Sbjct 20919 AATCTGGGCGATCTGCATCACCTGTTCCTGATAGACGAT 20957 >seq6714 Length=1758414 Score = 141 bits (156), Expect = 3e-29 Identities = 227/320 (71%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATGACCTCGCCAC 40236 |||||| |||||| |||| ||||| || | || ||||| |||| ||||| | | Sbjct 59298 GATCTGTCCGACCTGGTCGCGGCCGTATTTG-GCCTGTACGTAGCGGATCACCTCTTCGC 59356 Query 40237 GACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAG 40294 | || || | || |||||||||||||| |||||||| || ||||| ||||| || || Sbjct 59357 GGCGATCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGGTCGGGATTAAG 59414 Query 40295 GAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA 40354 |||||||||||| | ||| | |||||| |||| |||||||| || |||| Sbjct 59415 GAAGCGCTCGAACAGCAGCGAGAAGCGCAGCGGATCGACATCGGTGATGAGAAGCGCGTA 59474 Query 40355 GGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTT 40414 ||| ||||||||||| || | ||||| || || |||||||| | | | | ||| Sbjct 59475 GGCAACCAGCGAACCCGCACCCGAGCCACGGCCCGGGCCGACAGGAATGTCATGTTGCTT 59534 Query 40415 CGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT---CTGGAT 40471 ||||| ||||||||||| |||| ||||| || |||||| ||| |||||| Sbjct 59535 GGCCCATTTGATGAAGTCCGACACGATCAGGAAATAGCCGGGGAACTTCATGCGCTGGAT 59594 Query 40472 GATCATGTCGATCTCGTACT 40491 | ||| |||||||| ||| Sbjct 59595 G---ATGCCGATCTCGAACT 59611 >seq4285 Length=661 Score = 104 bits (114), Expect = 8e-18 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 39274 AGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCA 39333 |||||||| | |||||||| |||||| ||||||||||||||| |||||||| |||| Sbjct 425 AGTTCACGG--TGCTTGGCCATTTCCTCGGCCTTCTTCTTGCCCATGGCCCGGCGCAGCA 482 Query 39334 GGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCT 39393 |||||| |||||| | ||| || | || ||||| || | || | ||||||||||| Sbjct 483 AGTCGGCGCCACCCAGCGAGTAGCCACCGATCACCTGCGCCATCTGCATCACCTGCTCCT 542 Query 39394 GGTAGA 39399 |||||| Sbjct 543 GGTAGA 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163295593340562