Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq7272 170 4e-38 >seq7272 Length=98981 Score = 170 bits (188), Expect = 4e-38 Identities = 320/469 (68%), Gaps = 15/469 (3%) Strand=Plus/Minus Query 9370 TGCAGCGGCACGATTTCGTTCCGCCCGAACACGCGCGCGGCGGTGTCGGCCGCGCCGAAC 9429 ||||| ||| ||||||||| ||| ||||||| || || ||| || | | ||||||| Sbjct 43315 TGCAGGGGCTGGATTTCGTTGCGCGCGAACACCCGTGCAGCGTTGACCACATCGCCGAAG 43256 Query 9430 CCGCCCGTGTTGCTCGGGACGATGCCAAGCAACTGCGGCGGAACGCGATGGGCCGCGAGC 9489 || || | ||| ||| || | ||| | | |||||| || ||||| ||||| || | Sbjct 43255 CCACCTGCATTGGCCGGCACCACGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAAT 43196 Query 9490 GTGTCGTCGCGCGTCACGTTCTTGATGTCGAAAAACTGGTCTTTCGCTGCAACCTCCGAA 9549 ||| ||||| ||||||||||||||| |||||| | || || || || |||| Sbjct 43195 TGGTCATCGCGGCTCACGTTCTTGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCG 43136 Query 9550 ATCGGGATCAGTTGGACCGCGCCTTTTTTCGCCGCCGCTGTTTCGCGCGGCCGAGTGCAG 9609 || || | |||||||| || ||| || ||||| ||| ||| || | Sbjct 43135 ATGGGCAGCAGTTGGATGGC----TTTCTCTTTGCCGC---------CGGGCGAATGGAA 43089 Query 9610 AAACAGGTTCCGGAAATTACCGATGCCCTTCGAGTCGCGTAACGCCTTCCGGATCGCGTC 9669 |||||| || |||||||| || |||||||| || || |||| || | ||| || Sbjct 43088 AAACAGATTGCGGAAATTGCCCATGCCCTTGGAAGATTTCAAGGCCTGGCGCAGCGCATC 43029 Query 9670 TACGTCGTCCGGGTCCATGTTCGGG-TCGTTGAGGTACAGGATGAACCCGGCGTGCGAGC 9728 || ||||| ||| |||||| ||| | || || |||||| | ||||| || | Sbjct 43028 CACATCGTCTTTTGCCA-CTTCGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCC 42970 Query 9729 CGTTCGCGTAGTAGCGGCGCCGGAACAGGGTGGCGGACTCGTTCAACCACGCGGATTGCA 9788 | || ||| || |||||||| ||||| ||||| ||||| || | ||| ||||| |||| Sbjct 42969 CATTGTTGTAATACCGGCGCCGAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCA 42910 Query 9789 ACGATGCGATGTACTCGGGCATCCCGTACACCTCCTGATTCACGTCCGG 9837 || || | ||||| |||| || || | ||||| | ||| || || Sbjct 42909 GCGCGGCCAGGTACTGCGGCAGTCCATAGATTTCCTGGTGCACATCGGG 42861 Score = 158 bits (174), Expect = 3e-34 Identities = 675/1045 (65%), Gaps = 44/1045 (4%) Strand=Plus/Minus Query 10623 CGGGAAGAACTGGCGCACAAGCTGATGCACGCCGTGACCGATGCCGGTCGTATCGATCGC 10682 ||||||||||| ||| | ||| | ||||| || || | || || | ||| || Sbjct 42081 CGGGAAGAACTTTTTCACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCA 42022 Query 10683 GATATAGGTCACGTGGTAGCGCTGCGTCAATTCGCGGATTTTCTCCGCCTGCGTTTCGAA 10742 ||| | | ||||| ||| || |||| | |||||| || ||||||| ||| || Sbjct 42021 GATGTGTGCCACGTTGTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAA 41962 Query 10743 GTCGATGCCCTTCCAACG-ATGCCGTTCGAGCACACGGAATTTTCCGTTCGGCTGCTCGG 10801 ||| ||||| | | |||| | || |||| ||||| || ||| ||||| || | Sbjct 41961 GTCCGCTCCCTTGAACTGCATGC-GCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTG 41903 Query 10802 GCGGGGCGATCACGACGCACCCGGCCGAGTCGCCAGTAAGGGCAGGGTCGTAGCCGATCC 10861 ||||||| | ||| || || ||||||||||| ||| || ||||| ||||| |||| Sbjct 41902 GCGGGGCCAGCACTACAAGGCCCGCCGAGTCGCCCGTATGGCTGGGGTCATAGCCAATCC 41843 Query 10862 ATACCGGCTTCCAGCCGAACGGCCG-ATCGAGCAACGGCTTCACGTCCGTCCACACGTCC 10920 | || ||||| ||| |||||||| | || | || ||||| | || ||||| | ||| Sbjct 41842 AGACGGGCTTTTGGCCAAACGGCCGCAACGTG-AAGGGCTTGAAATCGCTCCACGCATCC 41784 Query 10921 CATGAATCGACCATGCA-CGCCTGTACG-----AGCCGGAAGGCGAACACCGATGAGGTG 10974 || || | ||| ||| | || ||| |||| |||| ||| ||||| Sbjct 41783 CAGCTGTCCGCATGGCAGCGCATCAGCGTGGACAGCGGGAA----AACAGCGA--AGGTG 41730 Query 10975 TCGTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGGCG--GGGCTGTTCGTTGAGC 11032 || || || ||| ||||||| |||||| || | || || | | ||| ||| Sbjct 41729 TCATCGACAAACCCGCACATGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCG--AAGC 41672 Query 11033 GCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCGATG-GCATCCTCGGCCGTG 11088 ||| || || || || ||| | || | || | ||| || |||||| ||||| Sbjct 41671 GCAGTTCGTCAAGGTCGAACAGAT---TGCAGCC-GCCGCGCTGCGCATCCAGCACCGTG 41616 Query 11089 ACGATCTGCCGCCA----TTGCCCGTCGCCGCACTGGCGCCCGCGTGCAAGCGACGTATG 11144 || ||||||||||| ||| || |||||| || | || | || || || ||| Sbjct 41615 ACAATCTGCCGCCATATCTTGTCC-TCGCCG--GTGAAG-CCTCCAGCCAGGTGCGAATG 41560 Query 11145 GGAAATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCGGTTGAAG---TCCGCGCC 11201 | | ||| | ||| | ||| || | | || || | ||||| | || |||| Sbjct 41559 GCTCAGGTCCAGCTCTATGCGGTCCTTTTTGGCGCGCTTCTTGTTGATGCGTTCGGCGC- 41501 Query 11202 AGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCGTCATCCG 11261 |||| | ||||||||| | |||| | || ||||| || || ||||| | || Sbjct 41500 --TCCACAGCGCATAGGCCTGGTGCTGCAGGCTGCTGGGCGTGGAAAACAGCGTCTTGCG 41443 Query 11262 CAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCAAACTTGCTGAC 11321 | ||||| || | ||||| || | || ||||| ||| || | || ||| |||| Sbjct 41442 CCAATGCTTGTGGATGGCCATACCGCTGGCCACCTTCCACAGCTCCGTGAAGTTGTTGAC 41383 Query 11322 CCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTGCGTGAACTGGT 11381 ||| || | ||||||||||| || | ||||| ||| || || ||||| | || || Sbjct 41382 CCAAAAGAATTCATCGAAATAGAGATTGCCGTGGTACGACTGCGCGGTGCGGGCGCTCGT 41323 Query 11382 GCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCGGTTAGCTCAAC 11441 ||| || ||| || || || || || || || ||||| | | || | Sbjct 41322 GCCCAGGAAATACAGCGTGGCGCCATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGAT 41263 Query 11442 CTGCGCAGCGTTCC-ACGCAAATTTCTGGATATACGAGCGGAACACGTGTGCCTGTGCGC 11500 | |||| | ||| ||||| ||| ||| ||||| || || ||||| || | Sbjct 41262 AT-CGCAATGCTCCTTGGCAAACGCGATGATGTACTGCCGGAAAACATGGGCCTGCGCAC 41204 Query 11501 GGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCACGAGTGCCTCGT 11560 |||| ||||| |||||||||||||| ||| || | ||| || | || |||||| Sbjct 41203 GGCTGGCCGAAAGAAAAATCTGATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGC 41144 Query 11561 GCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATGTTGCGGCGGCGCAGGT 11620 | |||| || |||| || |||||||| || || || || ||| ||| |||| | | Sbjct 41143 GGCCGAAGTACCACGTTGCCCCGATCTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084 Query 11621 GTCGATTCTCGAACCACGTGTTTTG 11645 | | ||| |||| |||||||| Sbjct 41083 GGATCTGCTCCCACCATGTGTTTTG 41059 Score = 120 bits (132), Expect = 7e-23 Identities = 412/632 (65%), Gaps = 18/632 (3%) Strand=Plus/Minus Query 26046 CGCGAAGTGATGGTGATCTGGCCGGATTTCGTCGCATGGGACGACGCCGCGTCGAAAGAG 26105 |||||| |||||||||||||| |||||| || ||| || || || | || || Sbjct 25399 CGCGAAACCATGGTGATCTGGCCCGATTTCAAAGCCTGGAACA---CCACGGCAAACAAG 25343 Query 26106 GT--TGAA-GTGCCCGCCGTAGCGTATGCGGTCGGCCTGCGCGCGAAGATCGA--TCAAC 26160 | | || | ||| || || || || ||| | || |||||||| ||||| | | Sbjct 25342 GCCATCAATGCGCCGGCTGTGGCCTACGCGATGGGGCTGCGCGCCCGCATCGACGTGGAG 25283 Query 26161 AAACCGGCTGGCATAAGACGCTCTCGAACGTCGCTGTGAATGGCGTCGAAGGGATCAGCA 26220 || || ||||| ||||| || || ||||| | | |||||| | || ||||||| Sbjct 25282 CAA--GGTTGGCACAAGACCCTGTCAAACGTGCCGCTAAATGGCCCGGTGGGCATCAGCA 25225 Query 26221 AGCCGGTTTCGTGGGATTTGCAGAACCCGGCGACCGATGCGGGTTTCCTCAACGAGAATC 26280 || || | || |||| | | ||| ||| || || | ||||| ||| Sbjct 25224 AGGACGTGCATTTCGACCTGCAAAGCTCGGAGACGGACGCAAACCTGCTCAATGAGGGCA 25165 Query 26281 AGGTCACGACGCTGATCAACCGGAACGGCTTCCGATTCTGGGGCTCGCGCACG-GCGTC- 26338 | ||||| ||||| |||||| | |||| || |||||||| |||||||| || | Sbjct 25164 ACGTCACCACGCTCATCAACTACCAGGGCTATCGCTTCTGGGGATCGCGCACCTGCAGCA 25105 Query 26339 -CGACGATCCGCTGTTCGCGTTCGAAAACTACACGCGCACGGCGCAGGTGCTGGCCGATA 26397 |||||| | ||||| ||||| | | |||||| || |||||||||||||| | Sbjct 25104 CCGACGAAC---TGTTCCGATTCGAGTCCAGCGTGCGCACTGCCCAGGTGCTGGCCGACA 25048 Query 26398 CGATGGCCGAAGCACAGATGGTCGTTATCGACGGCGCGATG-ATTCCGGCGCTACCGCGC 26456 | ||||| || | || | | | || ||||| | ||| | || || | | Sbjct 25047 CCATGGCAGAGGGTCATTTCGCCTTTGTCGACAAGCCCATGCACCCCAGC-ATGGTGAAA 24989 Query 26457 GACGTGATCGAGGGCATCAACGCAAAAATGCGTGAAATGAAAACCAAGGGCCAGTTGATC 26516 ||| | | || |||||||| || || | || ||| | || || |||| | | || Sbjct 24988 GACATCGTGGAAGGCATCAATGCCAAGTTCCGCGAACTCAAGGCCCTGGGCTACATCCTC 24929 Query 26517 GGCGGCTCGGCGTGGTTCGACGCGGAACAGAACGGCGTTGTGGCGCTGAAAGATGGCAAA 26576 | |||| || ||||| ||||| || ||| | | ||||| || | ||||| Sbjct 24928 GACGGCCGCGCCTGGTTTGACGCCGAGGTCAACACCACAGAAGCGCTCAAGGCCGGCAAG 24869 Query 26577 GCGGTGATCAATTACGACTACACGCCGGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAG 26636 |||| | | |||||||||||||| ||||| ||||||||| |||| | |||||| Sbjct 24868 CTGGTGCTTGACTACGACTACACGCCCGTGCCGCCGCTGGAAGACCTGGGATTCCGCCAG 24809 Query 26637 AAGATCACCGACCAGTATCTGGCCGATTTCGC 26668 |||||||||| ||| | | ||| ||||| Sbjct 24808 CGCATCACCGACCGCTATTTCGGCGACTTCGC 24777 Score = 96.9 bits (106), Expect = 8e-16 Identities = 615/971 (63%), Gaps = 39/971 (4%) Strand=Plus/Minus Query 13268 AGCTGAACGGTGTCGCGAGCGTTGCGGAAAAATTCGCGGTCGCGCCGAGCGTGCAACAAA 13327 ||||| || || || ||||| ||| | ||| ||| |||||| |||||| || | Sbjct 39429 AGCTGTCGGGCGTGGCCAGCGTCGCGCGGCACTTCAACGTCTCGCCGACCGTGCAGCAGA 39370 Query 13328 CGCTCGAAAAGCGCATTCAAGAATCGGCGGCGTTCCTGCAAAGCATCAACGTGCAGGGCG 13387 ||| |||| ||||| || |||||| | |||||| | ||||||| | | | || Sbjct 39369 AGCTGGAAACCCGCATGCAGGAATCGAGTTCATTCCTGAAGTCCATCAACATCCTGCCCG 39310 Query 13388 TGA--CCGAACAGATGGGCGAAAAGCTCGGCCTG---CTCATCGGCGCACCGATCGCGAG 13442 || ||| ||| |||||||||| | || ||| || | | || ||| |||| || Sbjct 39309 TGGTGCCG--CAGCAGGGCGAAAAGGTGGGTCTGAGCCTGACC--CGTCCCG-TCGCCAG 39255 Query 13443 CACGACGGACACCACGA---AGGGGGACCGGATCACGGTCGATCTGACCGACATGGACCC 13499 | ||||||||||| | || ||| | || |||| ||| | || |||| Sbjct 39254 CCGCACGGACACCACCGCTGACGGCCCCCGCAAGACCAAAGATCCGACAGGCAAGGACAA 39195 Query 13500 GAACGCTTACGTCTGCGCGCAGACGAATTACGACACGCATTTGAAGTACAGCAAGCTCGA 13559 || || ||| |||| ||||| ||| ||| || || | |||||| | |||||| Sbjct 39194 GACCGGATACCACTGCCTGCAGATTGATTCCGATACCCACATCAAGTACGCGATGCTCGA 39135 Query 13560 TGCGTGGGCGCAGTTCCCGAATTTCCAGACGATGGTGCGCGACGTGAACGCG--ACGCAA 13617 ||| |||||||| ||||| | || ||| | | ||||| ||| || |||||| Sbjct 39134 TGCCTGGGCGCACTTCCCCGACTTTCAGGTGCGTATCAGCGACCTGATTGCCGAACGCAA 39075 Query 13618 CAAGCGCTCGATCGGATTCGAATCGGCTTCAATGGTGTGG--GCCGGGCTGCAACGTCCG 13675 ||||| || || || | || | || || || ||| | || || || Sbjct 39074 T--GCGCTGGACCGCATCATGGTGGGATGGAACGGCAAGGAAGCCAAG--GCCACCACCA 39019 Query 13676 ATCGCACGAAGAACCCGAACCTCGAAGATGTGAACAAGGGCTGGCTGCAGAAGTACCGCG 13735 | || ||||| || | ||| ||| |||||| ||||||||| |||| Sbjct 39018 ACTTGACCGCCAACCCTTTGCTGCAGGATCTGACCAAGGGGTGGCTGCAGCGCCTGCGCG 38959 Query 13736 ATCAGGCGGGCGATCGGGTGATCAGCGAAGGGAAGAAGGGTTCGGGCAAGCTCGTGATCG 13795 | ||||| ||| || || || || ||| || |||||||| || | | Sbjct 38958 AAGAGGCGCCCGAGCGCGTCATGTCTTCTGGCAAGGTGG---CGGGCAAGGTC---ACTG 38905 Query 13796 GCGGCGCCGATGGCGATTACAAGAACCTCGACGCGCTCGTGTACGAGGCGACGAATTCGC 13855 || | | |||||| ||||||||||||||||| || | || || | | | |||| Sbjct 38904 TGGGACCGGGTGGCGACTACAAGAACCTCGACGCCCTGGCCATGGATGCCAAGCACTCGC 38845 Query 13856 TGATCGAGCCGTGGTATGCGGAAAGC--CCGGAACTGGTCGTGCTGTGCGGCCGCGATAC 13913 |||| || ||||| | | | |||| ||||| ||| || || | | || ||||| Sbjct 38844 TGATTGATTCGTGGCA--CCGCAAGCACCCGGATCTG--CGCGCCAT-CTGCAGCGATGA 38790 Query 13914 GCTCCTG---GACAAGTATTTCCCGATCCTCGATCGCGACAACCCGCCGACGGAATCGCT 13970 || || |||||| ||||| ||| | | | || | | ||| | || || Sbjct 38789 CCTGATGCATGACAAGCTGTTCCCCATCGTGAACAACAACGATCTGCCCAGCGAGCGCCT 38730 Query 13971 CGCGGCCAGTATGGTCATCAGCCAGAAGCGCATCGGCAATCTGCAAGCCATGCGGGTGCC 14030 |||||| ||||| | ||||||| |||| | ||| || ||| || ||||| Sbjct 38729 GGCGGCCGACATGGTGGTGAGCCAGATGCGCCTGGGCGGCAGCCAGGCCGTGACCGTGCC 38670 Query 14031 GTTCATGCCGCG-CGGCAAGCTGTTCATCACCATCCCGAAAAACCTGTCGATCTACTGGC 14089 ||| | | || ||| ||| ||||||| | |||||||||||| |||||||||| Sbjct 38669 TTTCTT-CATCGACGGTGGCCTGCTCATCACGCCTCTGAAAAACCTGTCCATCTACTGGC 38611 Query 14090 AAATCGGCGGCCGTCGGCGCGCGGTGATCGACAACCCGAAGCGCGATCAGGTCGAGTTCT 14149 || || | || || || | |||||||||||| | ||||| || || | Sbjct 38610 AACGCGATGCGCGCCGCAAGGCCATCATCGACAACCCGTCCATGAACCAGGTGGACTTTT 38551 Query 14150 TCGAATCGAGCAACGAGGCGTATGTGGTCGAGGACTTCGGCGCCGGTTGCCTGATCGAGA 14209 || | |||||| | |||||| ||||||| |||||||| | | | |||| | Sbjct 38550 TCAACAGCTCCAACGACGACTATGTGATCGAGGATTTCGGCGCGTGCGCCTTCGTCGAAA 38491 Query 14210 ACGTCGAATTC 14220 || |||||||| Sbjct 38490 ACATCGAATTC 38480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113234147211136