Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021343.1
Length=35430
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 170 4e-38
>seq7272
Length=98981
Score = 170 bits (188), Expect = 4e-38
Identities = 320/469 (68%), Gaps = 15/469 (3%)
Strand=Plus/Minus
Query 9370 TGCAGCGGCACGATTTCGTTCCGCCCGAACACGCGCGCGGCGGTGTCGGCCGCGCCGAAC 9429
||||| ||| ||||||||| ||| ||||||| || || ||| || | | |||||||
Sbjct 43315 TGCAGGGGCTGGATTTCGTTGCGCGCGAACACCCGTGCAGCGTTGACCACATCGCCGAAG 43256
Query 9430 CCGCCCGTGTTGCTCGGGACGATGCCAAGCAACTGCGGCGGAACGCGATGGGCCGCGAGC 9489
|| || | ||| ||| || | ||| | | |||||| || ||||| ||||| || |
Sbjct 43255 CCACCTGCATTGGCCGGCACCACGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAAT 43196
Query 9490 GTGTCGTCGCGCGTCACGTTCTTGATGTCGAAAAACTGGTCTTTCGCTGCAACCTCCGAA 9549
||| ||||| ||||||||||||||| |||||| | || || || || ||||
Sbjct 43195 TGGTCATCGCGGCTCACGTTCTTGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCG 43136
Query 9550 ATCGGGATCAGTTGGACCGCGCCTTTTTTCGCCGCCGCTGTTTCGCGCGGCCGAGTGCAG 9609
|| || | |||||||| || ||| || ||||| ||| ||| || |
Sbjct 43135 ATGGGCAGCAGTTGGATGGC----TTTCTCTTTGCCGC---------CGGGCGAATGGAA 43089
Query 9610 AAACAGGTTCCGGAAATTACCGATGCCCTTCGAGTCGCGTAACGCCTTCCGGATCGCGTC 9669
|||||| || |||||||| || |||||||| || || |||| || | ||| ||
Sbjct 43088 AAACAGATTGCGGAAATTGCCCATGCCCTTGGAAGATTTCAAGGCCTGGCGCAGCGCATC 43029
Query 9670 TACGTCGTCCGGGTCCATGTTCGGG-TCGTTGAGGTACAGGATGAACCCGGCGTGCGAGC 9728
|| ||||| ||| |||||| ||| | || || |||||| | ||||| || |
Sbjct 43028 CACATCGTCTTTTGCCA-CTTCGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCC 42970
Query 9729 CGTTCGCGTAGTAGCGGCGCCGGAACAGGGTGGCGGACTCGTTCAACCACGCGGATTGCA 9788
| || ||| || |||||||| ||||| ||||| ||||| || | ||| ||||| ||||
Sbjct 42969 CATTGTTGTAATACCGGCGCCGAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCA 42910
Query 9789 ACGATGCGATGTACTCGGGCATCCCGTACACCTCCTGATTCACGTCCGG 9837
|| || | ||||| |||| || || | ||||| | ||| || ||
Sbjct 42909 GCGCGGCCAGGTACTGCGGCAGTCCATAGATTTCCTGGTGCACATCGGG 42861
Score = 158 bits (174), Expect = 3e-34
Identities = 675/1045 (65%), Gaps = 44/1045 (4%)
Strand=Plus/Minus
Query 10623 CGGGAAGAACTGGCGCACAAGCTGATGCACGCCGTGACCGATGCCGGTCGTATCGATCGC 10682
||||||||||| ||| | ||| | ||||| || || | || || | ||| ||
Sbjct 42081 CGGGAAGAACTTTTTCACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCA 42022
Query 10683 GATATAGGTCACGTGGTAGCGCTGCGTCAATTCGCGGATTTTCTCCGCCTGCGTTTCGAA 10742
||| | | ||||| ||| || |||| | |||||| || ||||||| ||| ||
Sbjct 42021 GATGTGTGCCACGTTGTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAA 41962
Query 10743 GTCGATGCCCTTCCAACG-ATGCCGTTCGAGCACACGGAATTTTCCGTTCGGCTGCTCGG 10801
||| ||||| | | |||| | || |||| ||||| || ||| ||||| || |
Sbjct 41961 GTCCGCTCCCTTGAACTGCATGC-GCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTG 41903
Query 10802 GCGGGGCGATCACGACGCACCCGGCCGAGTCGCCAGTAAGGGCAGGGTCGTAGCCGATCC 10861
||||||| | ||| || || ||||||||||| ||| || ||||| ||||| ||||
Sbjct 41902 GCGGGGCCAGCACTACAAGGCCCGCCGAGTCGCCCGTATGGCTGGGGTCATAGCCAATCC 41843
Query 10862 ATACCGGCTTCCAGCCGAACGGCCG-ATCGAGCAACGGCTTCACGTCCGTCCACACGTCC 10920
| || ||||| ||| |||||||| | || | || ||||| | || ||||| | |||
Sbjct 41842 AGACGGGCTTTTGGCCAAACGGCCGCAACGTG-AAGGGCTTGAAATCGCTCCACGCATCC 41784
Query 10921 CATGAATCGACCATGCA-CGCCTGTACG-----AGCCGGAAGGCGAACACCGATGAGGTG 10974
|| || | ||| ||| | || ||| |||| |||| ||| |||||
Sbjct 41783 CAGCTGTCCGCATGGCAGCGCATCAGCGTGGACAGCGGGAA----AACAGCGA--AGGTG 41730
Query 10975 TCGTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGGCG--GGGCTGTTCGTTGAGC 11032
|| || || ||| ||||||| |||||| || | || || | | ||| |||
Sbjct 41729 TCATCGACAAACCCGCACATGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCG--AAGC 41672
Query 11033 GCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCGATG-GCATCCTCGGCCGTG 11088
||| || || || || ||| | || | || | ||| || |||||| |||||
Sbjct 41671 GCAGTTCGTCAAGGTCGAACAGAT---TGCAGCC-GCCGCGCTGCGCATCCAGCACCGTG 41616
Query 11089 ACGATCTGCCGCCA----TTGCCCGTCGCCGCACTGGCGCCCGCGTGCAAGCGACGTATG 11144
|| ||||||||||| ||| || |||||| || | || | || || || |||
Sbjct 41615 ACAATCTGCCGCCATATCTTGTCC-TCGCCG--GTGAAG-CCTCCAGCCAGGTGCGAATG 41560
Query 11145 GGAAATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCGGTTGAAG---TCCGCGCC 11201
| | ||| | ||| | ||| || | | || || | ||||| | || ||||
Sbjct 41559 GCTCAGGTCCAGCTCTATGCGGTCCTTTTTGGCGCGCTTCTTGTTGATGCGTTCGGCGC- 41501
Query 11202 AGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCGTCATCCG 11261
|||| | ||||||||| | |||| | || ||||| || || ||||| | ||
Sbjct 41500 --TCCACAGCGCATAGGCCTGGTGCTGCAGGCTGCTGGGCGTGGAAAACAGCGTCTTGCG 41443
Query 11262 CAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCAAACTTGCTGAC 11321
| ||||| || | ||||| || | || ||||| ||| || | || ||| ||||
Sbjct 41442 CCAATGCTTGTGGATGGCCATACCGCTGGCCACCTTCCACAGCTCCGTGAAGTTGTTGAC 41383
Query 11322 CCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTGCGTGAACTGGT 11381
||| || | ||||||||||| || | ||||| ||| || || ||||| | || ||
Sbjct 41382 CCAAAAGAATTCATCGAAATAGAGATTGCCGTGGTACGACTGCGCGGTGCGGGCGCTCGT 41323
Query 11382 GCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCGGTTAGCTCAAC 11441
||| || ||| || || || || || || || ||||| | | || |
Sbjct 41322 GCCCAGGAAATACAGCGTGGCGCCATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGAT 41263
Query 11442 CTGCGCAGCGTTCC-ACGCAAATTTCTGGATATACGAGCGGAACACGTGTGCCTGTGCGC 11500
| |||| | ||| ||||| ||| ||| ||||| || || ||||| || |
Sbjct 41262 AT-CGCAATGCTCCTTGGCAAACGCGATGATGTACTGCCGGAAAACATGGGCCTGCGCAC 41204
Query 11501 GGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCACGAGTGCCTCGT 11560
|||| ||||| |||||||||||||| ||| || | ||| || | || ||||||
Sbjct 41203 GGCTGGCCGAAAGAAAAATCTGATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGC 41144
Query 11561 GCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATGTTGCGGCGGCGCAGGT 11620
| |||| || |||| || |||||||| || || || || ||| ||| |||| | |
Sbjct 41143 GGCCGAAGTACCACGTTGCCCCGATCTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084
Query 11621 GTCGATTCTCGAACCACGTGTTTTG 11645
| | ||| |||| ||||||||
Sbjct 41083 GGATCTGCTCCCACCATGTGTTTTG 41059
Score = 120 bits (132), Expect = 7e-23
Identities = 412/632 (65%), Gaps = 18/632 (3%)
Strand=Plus/Minus
Query 26046 CGCGAAGTGATGGTGATCTGGCCGGATTTCGTCGCATGGGACGACGCCGCGTCGAAAGAG 26105
|||||| |||||||||||||| |||||| || ||| || || || | || ||
Sbjct 25399 CGCGAAACCATGGTGATCTGGCCCGATTTCAAAGCCTGGAACA---CCACGGCAAACAAG 25343
Query 26106 GT--TGAA-GTGCCCGCCGTAGCGTATGCGGTCGGCCTGCGCGCGAAGATCGA--TCAAC 26160
| | || | ||| || || || || ||| | || |||||||| ||||| | |
Sbjct 25342 GCCATCAATGCGCCGGCTGTGGCCTACGCGATGGGGCTGCGCGCCCGCATCGACGTGGAG 25283
Query 26161 AAACCGGCTGGCATAAGACGCTCTCGAACGTCGCTGTGAATGGCGTCGAAGGGATCAGCA 26220
|| || ||||| ||||| || || ||||| | | |||||| | || |||||||
Sbjct 25282 CAA--GGTTGGCACAAGACCCTGTCAAACGTGCCGCTAAATGGCCCGGTGGGCATCAGCA 25225
Query 26221 AGCCGGTTTCGTGGGATTTGCAGAACCCGGCGACCGATGCGGGTTTCCTCAACGAGAATC 26280
|| || | || |||| | | ||| ||| || || | ||||| |||
Sbjct 25224 AGGACGTGCATTTCGACCTGCAAAGCTCGGAGACGGACGCAAACCTGCTCAATGAGGGCA 25165
Query 26281 AGGTCACGACGCTGATCAACCGGAACGGCTTCCGATTCTGGGGCTCGCGCACG-GCGTC- 26338
| ||||| ||||| |||||| | |||| || |||||||| |||||||| || |
Sbjct 25164 ACGTCACCACGCTCATCAACTACCAGGGCTATCGCTTCTGGGGATCGCGCACCTGCAGCA 25105
Query 26339 -CGACGATCCGCTGTTCGCGTTCGAAAACTACACGCGCACGGCGCAGGTGCTGGCCGATA 26397
|||||| | ||||| ||||| | | |||||| || |||||||||||||| |
Sbjct 25104 CCGACGAAC---TGTTCCGATTCGAGTCCAGCGTGCGCACTGCCCAGGTGCTGGCCGACA 25048
Query 26398 CGATGGCCGAAGCACAGATGGTCGTTATCGACGGCGCGATG-ATTCCGGCGCTACCGCGC 26456
| ||||| || | || | | | || ||||| | ||| | || || | |
Sbjct 25047 CCATGGCAGAGGGTCATTTCGCCTTTGTCGACAAGCCCATGCACCCCAGC-ATGGTGAAA 24989
Query 26457 GACGTGATCGAGGGCATCAACGCAAAAATGCGTGAAATGAAAACCAAGGGCCAGTTGATC 26516
||| | | || |||||||| || || | || ||| | || || |||| | | ||
Sbjct 24988 GACATCGTGGAAGGCATCAATGCCAAGTTCCGCGAACTCAAGGCCCTGGGCTACATCCTC 24929
Query 26517 GGCGGCTCGGCGTGGTTCGACGCGGAACAGAACGGCGTTGTGGCGCTGAAAGATGGCAAA 26576
| |||| || ||||| ||||| || ||| | | ||||| || | |||||
Sbjct 24928 GACGGCCGCGCCTGGTTTGACGCCGAGGTCAACACCACAGAAGCGCTCAAGGCCGGCAAG 24869
Query 26577 GCGGTGATCAATTACGACTACACGCCGGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAG 26636
|||| | | |||||||||||||| ||||| ||||||||| |||| | ||||||
Sbjct 24868 CTGGTGCTTGACTACGACTACACGCCCGTGCCGCCGCTGGAAGACCTGGGATTCCGCCAG 24809
Query 26637 AAGATCACCGACCAGTATCTGGCCGATTTCGC 26668
|||||||||| ||| | | ||| |||||
Sbjct 24808 CGCATCACCGACCGCTATTTCGGCGACTTCGC 24777
Score = 96.9 bits (106), Expect = 8e-16
Identities = 615/971 (63%), Gaps = 39/971 (4%)
Strand=Plus/Minus
Query 13268 AGCTGAACGGTGTCGCGAGCGTTGCGGAAAAATTCGCGGTCGCGCCGAGCGTGCAACAAA 13327
||||| || || || ||||| ||| | ||| ||| |||||| |||||| || |
Sbjct 39429 AGCTGTCGGGCGTGGCCAGCGTCGCGCGGCACTTCAACGTCTCGCCGACCGTGCAGCAGA 39370
Query 13328 CGCTCGAAAAGCGCATTCAAGAATCGGCGGCGTTCCTGCAAAGCATCAACGTGCAGGGCG 13387
||| |||| ||||| || |||||| | |||||| | ||||||| | | | ||
Sbjct 39369 AGCTGGAAACCCGCATGCAGGAATCGAGTTCATTCCTGAAGTCCATCAACATCCTGCCCG 39310
Query 13388 TGA--CCGAACAGATGGGCGAAAAGCTCGGCCTG---CTCATCGGCGCACCGATCGCGAG 13442
|| ||| ||| |||||||||| | || ||| || | | || ||| |||| ||
Sbjct 39309 TGGTGCCG--CAGCAGGGCGAAAAGGTGGGTCTGAGCCTGACC--CGTCCCG-TCGCCAG 39255
Query 13443 CACGACGGACACCACGA---AGGGGGACCGGATCACGGTCGATCTGACCGACATGGACCC 13499
| ||||||||||| | || ||| | || |||| ||| | || ||||
Sbjct 39254 CCGCACGGACACCACCGCTGACGGCCCCCGCAAGACCAAAGATCCGACAGGCAAGGACAA 39195
Query 13500 GAACGCTTACGTCTGCGCGCAGACGAATTACGACACGCATTTGAAGTACAGCAAGCTCGA 13559
|| || ||| |||| ||||| ||| ||| || || | |||||| | ||||||
Sbjct 39194 GACCGGATACCACTGCCTGCAGATTGATTCCGATACCCACATCAAGTACGCGATGCTCGA 39135
Query 13560 TGCGTGGGCGCAGTTCCCGAATTTCCAGACGATGGTGCGCGACGTGAACGCG--ACGCAA 13617
||| |||||||| ||||| | || ||| | | ||||| ||| || ||||||
Sbjct 39134 TGCCTGGGCGCACTTCCCCGACTTTCAGGTGCGTATCAGCGACCTGATTGCCGAACGCAA 39075
Query 13618 CAAGCGCTCGATCGGATTCGAATCGGCTTCAATGGTGTGG--GCCGGGCTGCAACGTCCG 13675
||||| || || || | || | || || || ||| | || || ||
Sbjct 39074 T--GCGCTGGACCGCATCATGGTGGGATGGAACGGCAAGGAAGCCAAG--GCCACCACCA 39019
Query 13676 ATCGCACGAAGAACCCGAACCTCGAAGATGTGAACAAGGGCTGGCTGCAGAAGTACCGCG 13735
| || ||||| || | ||| ||| |||||| ||||||||| ||||
Sbjct 39018 ACTTGACCGCCAACCCTTTGCTGCAGGATCTGACCAAGGGGTGGCTGCAGCGCCTGCGCG 38959
Query 13736 ATCAGGCGGGCGATCGGGTGATCAGCGAAGGGAAGAAGGGTTCGGGCAAGCTCGTGATCG 13795
| ||||| ||| || || || || ||| || |||||||| || | |
Sbjct 38958 AAGAGGCGCCCGAGCGCGTCATGTCTTCTGGCAAGGTGG---CGGGCAAGGTC---ACTG 38905
Query 13796 GCGGCGCCGATGGCGATTACAAGAACCTCGACGCGCTCGTGTACGAGGCGACGAATTCGC 13855
|| | | |||||| ||||||||||||||||| || | || || | | | ||||
Sbjct 38904 TGGGACCGGGTGGCGACTACAAGAACCTCGACGCCCTGGCCATGGATGCCAAGCACTCGC 38845
Query 13856 TGATCGAGCCGTGGTATGCGGAAAGC--CCGGAACTGGTCGTGCTGTGCGGCCGCGATAC 13913
|||| || ||||| | | | |||| ||||| ||| || || | | || |||||
Sbjct 38844 TGATTGATTCGTGGCA--CCGCAAGCACCCGGATCTG--CGCGCCAT-CTGCAGCGATGA 38790
Query 13914 GCTCCTG---GACAAGTATTTCCCGATCCTCGATCGCGACAACCCGCCGACGGAATCGCT 13970
|| || |||||| ||||| ||| | | | || | | ||| | || ||
Sbjct 38789 CCTGATGCATGACAAGCTGTTCCCCATCGTGAACAACAACGATCTGCCCAGCGAGCGCCT 38730
Query 13971 CGCGGCCAGTATGGTCATCAGCCAGAAGCGCATCGGCAATCTGCAAGCCATGCGGGTGCC 14030
|||||| ||||| | ||||||| |||| | ||| || ||| || |||||
Sbjct 38729 GGCGGCCGACATGGTGGTGAGCCAGATGCGCCTGGGCGGCAGCCAGGCCGTGACCGTGCC 38670
Query 14031 GTTCATGCCGCG-CGGCAAGCTGTTCATCACCATCCCGAAAAACCTGTCGATCTACTGGC 14089
||| | | || ||| ||| ||||||| | |||||||||||| ||||||||||
Sbjct 38669 TTTCTT-CATCGACGGTGGCCTGCTCATCACGCCTCTGAAAAACCTGTCCATCTACTGGC 38611
Query 14090 AAATCGGCGGCCGTCGGCGCGCGGTGATCGACAACCCGAAGCGCGATCAGGTCGAGTTCT 14149
|| || | || || || | |||||||||||| | ||||| || || |
Sbjct 38610 AACGCGATGCGCGCCGCAAGGCCATCATCGACAACCCGTCCATGAACCAGGTGGACTTTT 38551
Query 14150 TCGAATCGAGCAACGAGGCGTATGTGGTCGAGGACTTCGGCGCCGGTTGCCTGATCGAGA 14209
|| | |||||| | |||||| ||||||| |||||||| | | | |||| |
Sbjct 38550 TCAACAGCTCCAACGACGACTATGTGATCGAGGATTTCGGCGCGTGCGCCTTCGTCGAAA 38491
Query 14210 ACGTCGAATTC 14220
|| ||||||||
Sbjct 38490 ACATCGAATTC 38480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113234147211136
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