Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq9689 129 5e-25 seq7823 129 5e-25 seq11548 100 3e-16 seq9026 87.8 2e-12 >seq9689 Length=17130 Score = 129 bits (142), Expect = 5e-25 Identities = 238/346 (69%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 104979 CGCGAGAAGTACTGGGCGCGTGTGGAGATGGAGGTCCGCACCATCACCAGCAAGAACTTC 105038 ||||| |||| | | ||| ||||| | ||| || |||||||| || | | |||| Sbjct 9003 CGCGAAGAGTATTTCGAGCGCCTGGAGTTCGAGCTCAACACCATCATCAAGATGGGCTTC 9062 Query 105039 GCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCATGCTC 105095 | || |||||| |||| ||||||| || | |||||| ||| ||| |||| | Sbjct 9063 CCGGGCTACTTCCTGATCGTGGCCGACTTCATCCAGTGGGGCAAGAACCAGGGCATTCCG 9122 Query 105096 GTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATCACC 105155 |||| || ||||||||||||| | || ||||| || ||| | || | |||||| Sbjct 9123 ATCGGCCCGGGCCGTGGTTCGGGTGCCGGTTCGCTGGTGGCGTGGGCGCTGAAGATCACC 9182 Query 105156 GAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGGAAG 105215 || || |||||| | |||| ||||| |||||||||| ||| || || || || | Sbjct 9183 GATCTGGACCCGCTGCCGTACAACCTGCTGTTCGAGCGATTCCTCAATCCCGAACGCGTG 9242 Query 105216 AACTTCCCCGACATCGATCTCGACTTCCCGCA-GAAGCGTCGCGGCGAGGTCGTCGACTA 105274 | |||||| |||| ||||||| | ||| | | || |||| |||||| ||||||| Sbjct 9243 TCGATGCCCGACTTCGACATCGACTT-CTGCATGGACCGCCGCGACGAGGTGATCGACTA 9301 Query 105275 CATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320 | |||| | ||||| | ||| ||||| || |||| |||| Sbjct 9302 CGTCGCGCGCAAGTACGGGCGCGAGCGCGTCAGCCAGATCATCACC 9347 >seq7823 Length=199163 Score = 129 bits (142), Expect = 5e-25 Identities = 239/348 (69%), Gaps = 7/348 (2%) Strand=Plus/Minus Query 105040 CCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCATGCTCG 105096 |||| |||||| |||| | |||| || ||||||||| ||| || |||| | || Sbjct 171353 CCGGTTACTTCCTGATCGTTTCGGACTTCATCAAGTGGGCCAAGACCCACGGCATCCCCG 171294 Query 105097 TCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATCACCG 105156 | || ||||| || ||||||| || ||||| || ||| | ||| || ||||||| Sbjct 171293 TGGGGCCCGGGCGGGGTTCGGGCGCCGGCTCTCTGGTCGCCTACGCCCTGACCATCACCA 171234 Query 105157 AGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGGAAGA 105216 | ||||| ||| | || || |||| |||||||||||||| | || |||||| | Sbjct 171233 ATCTCGATCCGCTGCGGTTCGGCCTGCTGTTCGAGCGGTTCCTGAACCCCGAGCGGGTGT 171174 Query 105217 ACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGTCGTCGACTACA 105276 | |||||| |||| |||||||| ||| | || |||| |||||| ||| |||| Sbjct 171173 CGATGCCCGACTTCGACATCGACTTCTGCCAGGAACGCCGCGAAGAGGTCATCGCCTACG 171114 Query 105277 TCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACCCGGGCCAAGCT--CGG 105334 || ||| |||||| ||||| | ||| | |||| |||| | || || || Sbjct 171113 TCCAGGACAAGTACGGCGACGACCGGGTCGCCCAGATCATCACCTTCGGCACCCTGCAGG 171054 Query 105335 CCCGAAGAGCGCGATCCGCGACATCGCCCGCGCGCTGCACATCCCGCT 105382 |||| | || | | |||||| ||| ||||| |||||| | ||||| Sbjct 171053 CCCG--GGCCGTGCTGCGCGACGTCGGCCGCGTGCTGCAGCTGCCGCT 171008 >seq11548 Length=62939 Score = 100 bits (110), Expect = 3e-16 Identities = 165/235 (70%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 105035 CTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACCGC---AT 105091 |||| |||| |||||| |||| ||||||| || ||| ||||| ||||| | || Sbjct 7948 CTTCCCCGGCTACTTCCTGATCGTGGCCGACTTCATCAAATGGGCCAAGGATCATGATAT 8007 Query 105092 GCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACAT 105151 | || ||||| ||||||||||||| | || ||||| ||| | | | || ||| Sbjct 8008 TCCGGTGGGTCCGGGCCGTGGTTCGGGTGCCGGATCGCTGGTCGCCTGGGCGCTGACCAT 8067 Query 105152 CACCGAGCTCGACCCGAT-CAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGC 105210 ||| || ||||||||| | ||| | | |||| |||||||||| ||| | ||||| | Sbjct 8068 CACTGATCTCGACCCGCTGCAACT-GGGCCTGCTGTTCGAGCGCTTCCTGAACCCGGAAC 8126 Query 105211 GGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGT 105265 | | | |||||| ||||| |||||||| | | ||| ||||||||||| Sbjct 8127 GCGTTTCCATGCCCGACTTCGATATCGACTTCTGCGAAACGCGGCGCGGCGAGGT 8181 >seq9026 Length=54586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/234 (68%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 105035 CTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGG---ACCGCAT 105091 |||| |||| |||||| |||| | || | || ||| |||| ||||| || | || Sbjct 21969 CTTCCCCGGCTACTTCCTGATCGTGTCGGATTTCATCAAATGGGGTAAGGCGCACGGTAT 21910 Query 105092 GCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACAT 105151 | |||||| ||||| || || |||| || || ||||| ||| | | | || ||| Sbjct 21909 TCCCGTCGGCCCCGGACGGGGCTCGGGCGCCGGGTCGCTGGTCGCCTGGGTACTGACCAT 21850 Query 105152 CACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCG 105211 |||||| || |||||| | | | ||| |||||||||||||| || || || || Sbjct 21849 CACCGACCTGGACCCGCTGCGCTTTGGTCTGCTGTTCGAGCGGTTCCTCAATCCCGAACG 21790 Query 105212 GAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGT 105265 | | |||||| |||| |||||||| ||| ||||||||| ||||| Sbjct 21789 GGTTTCGATGCCCGACTTCGACGTCGACTTCTGCCAGGAGCGTCGCGAAGAGGT 21736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455987749845720