Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021347.1
Length=142563
Score E
Sequences producing significant alignments: (Bits) Value
seq9689 129 5e-25
seq7823 129 5e-25
seq11548 100 3e-16
seq9026 87.8 2e-12
>seq9689
Length=17130
Score = 129 bits (142), Expect = 5e-25
Identities = 238/346 (69%), Gaps = 5/346 (1%)
Strand=Plus/Plus
Query 104979 CGCGAGAAGTACTGGGCGCGTGTGGAGATGGAGGTCCGCACCATCACCAGCAAGAACTTC 105038
||||| |||| | | ||| ||||| | ||| || |||||||| || | | ||||
Sbjct 9003 CGCGAAGAGTATTTCGAGCGCCTGGAGTTCGAGCTCAACACCATCATCAAGATGGGCTTC 9062
Query 105039 GCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCATGCTC 105095
| || |||||| |||| ||||||| || | |||||| ||| ||| |||| |
Sbjct 9063 CCGGGCTACTTCCTGATCGTGGCCGACTTCATCCAGTGGGGCAAGAACCAGGGCATTCCG 9122
Query 105096 GTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATCACC 105155
|||| || ||||||||||||| | || ||||| || ||| | || | ||||||
Sbjct 9123 ATCGGCCCGGGCCGTGGTTCGGGTGCCGGTTCGCTGGTGGCGTGGGCGCTGAAGATCACC 9182
Query 105156 GAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGGAAG 105215
|| || |||||| | |||| ||||| |||||||||| ||| || || || || |
Sbjct 9183 GATCTGGACCCGCTGCCGTACAACCTGCTGTTCGAGCGATTCCTCAATCCCGAACGCGTG 9242
Query 105216 AACTTCCCCGACATCGATCTCGACTTCCCGCA-GAAGCGTCGCGGCGAGGTCGTCGACTA 105274
| |||||| |||| ||||||| | ||| | | || |||| |||||| |||||||
Sbjct 9243 TCGATGCCCGACTTCGACATCGACTT-CTGCATGGACCGCCGCGACGAGGTGATCGACTA 9301
Query 105275 CATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320
| |||| | ||||| | ||| ||||| || |||| ||||
Sbjct 9302 CGTCGCGCGCAAGTACGGGCGCGAGCGCGTCAGCCAGATCATCACC 9347
>seq7823
Length=199163
Score = 129 bits (142), Expect = 5e-25
Identities = 239/348 (69%), Gaps = 7/348 (2%)
Strand=Plus/Minus
Query 105040 CCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCATGCTCG 105096
|||| |||||| |||| | |||| || ||||||||| ||| || |||| | ||
Sbjct 171353 CCGGTTACTTCCTGATCGTTTCGGACTTCATCAAGTGGGCCAAGACCCACGGCATCCCCG 171294
Query 105097 TCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATCACCG 105156
| || ||||| || ||||||| || ||||| || ||| | ||| || |||||||
Sbjct 171293 TGGGGCCCGGGCGGGGTTCGGGCGCCGGCTCTCTGGTCGCCTACGCCCTGACCATCACCA 171234
Query 105157 AGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGGAAGA 105216
| ||||| ||| | || || |||| |||||||||||||| | || |||||| |
Sbjct 171233 ATCTCGATCCGCTGCGGTTCGGCCTGCTGTTCGAGCGGTTCCTGAACCCCGAGCGGGTGT 171174
Query 105217 ACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGTCGTCGACTACA 105276
| |||||| |||| |||||||| ||| | || |||| |||||| ||| ||||
Sbjct 171173 CGATGCCCGACTTCGACATCGACTTCTGCCAGGAACGCCGCGAAGAGGTCATCGCCTACG 171114
Query 105277 TCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACCCGGGCCAAGCT--CGG 105334
|| ||| |||||| ||||| | ||| | |||| |||| | || || ||
Sbjct 171113 TCCAGGACAAGTACGGCGACGACCGGGTCGCCCAGATCATCACCTTCGGCACCCTGCAGG 171054
Query 105335 CCCGAAGAGCGCGATCCGCGACATCGCCCGCGCGCTGCACATCCCGCT 105382
|||| | || | | |||||| ||| ||||| |||||| | |||||
Sbjct 171053 CCCG--GGCCGTGCTGCGCGACGTCGGCCGCGTGCTGCAGCTGCCGCT 171008
>seq11548
Length=62939
Score = 100 bits (110), Expect = 3e-16
Identities = 165/235 (70%), Gaps = 5/235 (2%)
Strand=Plus/Plus
Query 105035 CTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACCGC---AT 105091
|||| |||| |||||| |||| ||||||| || ||| ||||| ||||| | ||
Sbjct 7948 CTTCCCCGGCTACTTCCTGATCGTGGCCGACTTCATCAAATGGGCCAAGGATCATGATAT 8007
Query 105092 GCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACAT 105151
| || ||||| ||||||||||||| | || ||||| ||| | | | || |||
Sbjct 8008 TCCGGTGGGTCCGGGCCGTGGTTCGGGTGCCGGATCGCTGGTCGCCTGGGCGCTGACCAT 8067
Query 105152 CACCGAGCTCGACCCGAT-CAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGC 105210
||| || ||||||||| | ||| | | |||| |||||||||| ||| | ||||| |
Sbjct 8068 CACTGATCTCGACCCGCTGCAACT-GGGCCTGCTGTTCGAGCGCTTCCTGAACCCGGAAC 8126
Query 105211 GGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGT 105265
| | | |||||| ||||| |||||||| | | ||| |||||||||||
Sbjct 8127 GCGTTTCCATGCCCGACTTCGATATCGACTTCTGCGAAACGCGGCGCGGCGAGGT 8181
>seq9026
Length=54586
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/234 (68%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 105035 CTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGG---ACCGCAT 105091
|||| |||| |||||| |||| | || | || ||| |||| ||||| || | ||
Sbjct 21969 CTTCCCCGGCTACTTCCTGATCGTGTCGGATTTCATCAAATGGGGTAAGGCGCACGGTAT 21910
Query 105092 GCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACAT 105151
| |||||| ||||| || || |||| || || ||||| ||| | | | || |||
Sbjct 21909 TCCCGTCGGCCCCGGACGGGGCTCGGGCGCCGGGTCGCTGGTCGCCTGGGTACTGACCAT 21850
Query 105152 CACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCG 105211
|||||| || |||||| | | | ||| |||||||||||||| || || || ||
Sbjct 21849 CACCGACCTGGACCCGCTGCGCTTTGGTCTGCTGTTCGAGCGGTTCCTCAATCCCGAACG 21790
Query 105212 GAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGT 105265
| | |||||| |||| |||||||| ||| ||||||||| |||||
Sbjct 21789 GGTTTCGATGCCCGACTTCGACGTCGACTTCTGCCAGGAGCGTCGCGAAGAGGT 21736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 455987749845720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |