Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021348.1 Length=156558 Score E Sequences producing significant alignments: (Bits) Value seq7823 89.7 5e-13 seq9683 86.0 6e-12 >seq7823 Length=199163 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 115639 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 115698 ||||||||| || | ||||| ||||| ||| |||| | | |||| || ||||| || Sbjct 170358 ACCTACGGCGTCATCGTCTATCAGGAACAGGTGATGCAGATCGCCCAGATCCTGGCGGGC 170299 Query 115699 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 115755 | || || |||||||||||| | |||||| || ||| ||||||||||||| |||| Sbjct 170298 TACAGCCTGGGCGAGGCCGACCTGCTGCGCCGGGCCATGGGCAAGAAGAAGAAGGAG 170242 >seq9683 Length=137075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 115639 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 115698 |||||||| ||| ||||||||||||||||| |||| | |||||| ||| ||||| ||| Sbjct 110407 ACCTACGGGATCATGGTCTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 110466 Query 115699 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 115755 | | | | ||||| ||||| | |||| | ||| |||||||||||| | ||| Sbjct 110467 TACTCGCTGGGCGGCGCCGACCTCTTGCGCCGTGCCATGGGCAAGAAGAAGGTCGAG 110523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500763319817520