Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq10734 190 3e-43 seq7053 183 4e-41 seq9470 154 2e-32 seq9538 150 3e-31 seq6415 150 3e-31 seq9639 125 1e-23 seq11739 116 5e-21 >seq10734 Length=9239 Score = 190 bits (210), Expect = 3e-43 Identities = 196/253 (77%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 98941 CGCCGAAGAAAG--ACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCG 98998 |||||| |||| | || ||||| || ||||| | | || ||| |||||||| Sbjct 1263 CGCCGAGAAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCG 1322 Query 98999 TTTCAACTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAG-CGTTGCCACCTGCGCTCTA 99057 ||||||| || ||||| ||||||||||| || |||||| | || ||||||||||| | Sbjct 1323 TTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTG-CACCTGCGCTCGA 1381 Query 99058 TTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATA 99117 | ||||| || ||||||||||||||||| ||||||||||| ||| |||||||| || | Sbjct 1382 TCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACA 1441 Query 99118 ATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACG 99177 | ||| || |||||||| ||||| ||| | |||||||||||||| ||||| |||| Sbjct 1442 ACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCTACG 1501 Query 99178 GTAAGCAGTGGCG 99190 | ||||||||||| Sbjct 1502 GCAAGCAGTGGCG 1514 >seq7053 Length=464797 Score = 183 bits (202), Expect = 4e-41 Identities = 195/255 (76%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 98951 AGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCA 99010 |||||| ||||| || || |||| || ||||||| |||||||||| ||| || | Sbjct 70841 AGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTC 70782 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAAC 99069 |||||||| ||| | | || |||||| | ||| | |||||||| || ||||||||| Sbjct 70781 CGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGC-ATCTGCGCTCCATCATCCATGAAT 70723 Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129 |||||||||||||||| ||||| ||||||||| || || || || || || || ||| Sbjct 70722 TGCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCA 70663 Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGC 99189 | |||||||||||||| ||| | || ||||| ||||| ||||| || ||| |||||||| Sbjct 70662 TCTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGC 70603 Query 99190 GGGCATGGACTGCGC 99204 | | ||| | |||| Sbjct 70602 GTTCCTGGCCGGCGC 70588 >seq9470 Length=127963 Score = 154 bits (170), Expect = 2e-32 Identities = 188/254 (74%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| ||||| || ||||| || ||||||||| ||||||||| ||| || || Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAACT 99070 || || |||||| | || |||||| | ||| |||||||||| || ||| || || Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGC-ACCTGCGCTCGATCATCGTCGAGCT 53086 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 |||||||||||| ||||| ||||| ||| | ||||| || || || || | ||| Sbjct 53085 TCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCAT 53026 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||||||||| ||| | ||||| ||||||||||| ||||| ||||||||||| Sbjct 53025 CTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966 Query 99191 GGCATGGACTGCGC 99204 | ||| | |||| Sbjct 52965 CTCGTGGGCGGCGC 52952 >seq9538 Length=646221 Score = 150 bits (166), Expect = 3e-31 Identities = 189/259 (73%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| ||||| || ||||| | || | |||||| | |||||||||||| | || Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 || || |||||| || | || |||||| |||||| || || ||||| ||||| Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 |||||||| ||| ||||| ||||| ||| | || ||||| || | || || ||||| Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191 |||||||| |||||||| || ||||| ||||| ||||| || || ||||||||||| Sbjct 486681 TGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCGC 486740 Query 99192 GCATGGAC---TGCGCATG 99207 | ||| | |||||||| Sbjct 486741 TCCTGGCCGGATGCGCATG 486759 >seq6415 Length=247467 Score = 150 bits (166), Expect = 3e-31 Identities = 181/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAA-CTTGCA 99010 ||||| || || || |||||||| | ||||||| ||||| || ||| | || || Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAAC 99069 | | || |||||| | | || ||||| | ||| |||||||||| || ||| || | Sbjct 53029 A-AGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGC-ACCTGCGCTCGATCATCATCGAGC 53086 Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129 |||||||||||||||| ||||||||||| ||| ||||| || || || || || || Sbjct 53087 TGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCA 53146 Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGC 99189 | |||||||| ||||| ||| |||| ||||| || || ||||| ||||| |||||||||| Sbjct 53147 TCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGC 53206 Query 99190 G 99190 | Sbjct 53207 G 53207 >seq9639 Length=103419 Score = 125 bits (138), Expect = 1e-23 Identities = 177/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 |||| ||||||||||| || ||||||| | ||||||||||||||||| ||| || Sbjct 4300 AAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGAC 4241 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCA 99064 || ||||| || |||||||| || |||||| | ||| |||| || || |||| Sbjct 4240 CTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGC-ACCTCAAGTCCATCATCCT 4182 Query 99065 TGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGT 99124 |||||||||||||||||| ||||||| |||| | | | ||| | || || Sbjct 4181 GGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTG 4122 Query 99125 AACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCA 99184 ||||| |||||||||||||| | | | |||||||| || ||||| || || ||| Sbjct 4121 CACCATCTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCA 4062 Query 99185 GTGGCG 99190 ||||| Sbjct 4061 ATGGCG 4056 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 99594 TGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCGCGTCG 99653 || ||||| || ||||| || || ||| | ||| |||| || || || |||||||| Sbjct 3871 TGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 3812 Query 99654 TATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGGGCGATTTCGT 99712 || || || |||| |||||| | || ||||| |||| ||| ||||||||| ||| | Sbjct 3811 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACC-TGGAGGTGGGCGACTTCAT 3753 Query 99713 CTGGACCGGCGGTGA 99727 |||||||||||| || Sbjct 3752 CTGGACCGGCGGCGA 3738 >seq11739 Length=237542 Score = 116 bits (128), Expect = 5e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644 ||||||||||| || || ||||| |||||||| || || ||||| || ||||| ||||| Sbjct 8959 AAGTTGTCTTGCCAACTTTATCAACGTAGTGCAGATGTTTTCTTAGGGGTGCCATTTAAT 8900 Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCAC-AGCAGGCGAATATGGCGGTGGG 99703 || || ||||||||||||| ||| ||| |||| | || | | | ||| || || Sbjct 8899 ATTGCCAGCTATGCTCTACTGACTCATATGGTTGCTCAAGTTTGTGGTTTAGGC-GTAGG 8841 Query 99704 CGATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCA 99761 ||||| |||||||| ||||||||| ||| | ||| ||||||| | ||||| ||| Sbjct 8840 TGATTTTGTCTGGACTGGCGGTGATACACATTTATATGTTAACCATTTTGAACAAGCA 8783 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 || ||||| |||||||| || | |||| | || || || || |||||||| ||||| | Sbjct 9421 GATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTTGACTTGTCA 9362 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 |||| || ||||| |||| || || || | ||||| ||| | ||||||| Sbjct 9361 AAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTGATTGAACTG 9302 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 ||||||||||| |||||||||||||| | || || || ||||| ||| || | ||| Sbjct 9301 CTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAAGTTTCGATT 9242 Query 99132 TGGGACGAATGG 99143 ||||| |||||| Sbjct 9241 TGGGATGAATGG 9230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716501902080360