Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021531.1
Length=223989
Score E
Sequences producing significant alignments: (Bits) Value
seq10734 190 3e-43
seq7053 183 4e-41
seq9470 154 2e-32
seq9538 150 3e-31
seq6415 150 3e-31
seq9639 125 1e-23
seq11739 116 5e-21
>seq10734
Length=9239
Score = 190 bits (210), Expect = 3e-43
Identities = 196/253 (77%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 98941 CGCCGAAGAAAG--ACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCG 98998
|||||| |||| | || ||||| || ||||| | | || ||| ||||||||
Sbjct 1263 CGCCGAGAAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCG 1322
Query 98999 TTTCAACTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAG-CGTTGCCACCTGCGCTCTA 99057
||||||| || ||||| ||||||||||| || |||||| | || ||||||||||| |
Sbjct 1323 TTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTG-CACCTGCGCTCGA 1381
Query 99058 TTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATA 99117
| ||||| || ||||||||||||||||| ||||||||||| ||| |||||||| || |
Sbjct 1382 TCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACA 1441
Query 99118 ATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACG 99177
| ||| || |||||||| ||||| ||| | |||||||||||||| ||||| ||||
Sbjct 1442 ACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCTACG 1501
Query 99178 GTAAGCAGTGGCG 99190
| |||||||||||
Sbjct 1502 GCAAGCAGTGGCG 1514
>seq7053
Length=464797
Score = 183 bits (202), Expect = 4e-41
Identities = 195/255 (76%), Gaps = 2/255 (1%)
Strand=Plus/Minus
Query 98951 AGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCA 99010
|||||| ||||| || || |||| || ||||||| |||||||||| ||| || |
Sbjct 70841 AGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTC 70782
Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAAC 99069
|||||||| ||| | | || |||||| | ||| | |||||||| || |||||||||
Sbjct 70781 CGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGC-ATCTGCGCTCCATCATCCATGAAT 70723
Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129
|||||||||||||||| ||||| ||||||||| || || || || || || || |||
Sbjct 70722 TGCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCA 70663
Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGC 99189
| |||||||||||||| ||| | || ||||| ||||| ||||| || ||| ||||||||
Sbjct 70662 TCTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGC 70603
Query 99190 GGGCATGGACTGCGC 99204
| | ||| | ||||
Sbjct 70602 GTTCCTGGCCGGCGC 70588
>seq9470
Length=127963
Score = 154 bits (170), Expect = 2e-32
Identities = 188/254 (74%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011
||||| ||||| || ||||| || ||||||||| ||||||||| ||| || ||
Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145
Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAACT 99070
|| || |||||| | || |||||| | ||| |||||||||| || ||| || ||
Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGC-ACCTGCGCTCGATCATCGTCGAGCT 53086
Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130
|||||||||||| ||||| ||||| ||| | ||||| || || || || | |||
Sbjct 53085 TCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCAT 53026
Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190
|||||||||||||| ||| | ||||| ||||||||||| ||||| |||||||||||
Sbjct 53025 CTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966
Query 99191 GGCATGGACTGCGC 99204
| ||| | ||||
Sbjct 52965 CTCGTGGGCGGCGC 52952
>seq9538
Length=646221
Score = 150 bits (166), Expect = 3e-31
Identities = 189/259 (73%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011
||||| ||||| || ||||| | || | |||||| | |||||||||||| | ||
Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560
Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071
|| || |||||| || | || |||||| |||||| || || ||||| |||||
Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620
Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131
|||||||| ||| ||||| ||||| ||| | || ||||| || | || || |||||
Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680
Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191
|||||||| |||||||| || ||||| ||||| ||||| || || |||||||||||
Sbjct 486681 TGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCGC 486740
Query 99192 GCATGGAC---TGCGCATG 99207
| ||| | ||||||||
Sbjct 486741 TCCTGGCCGGATGCGCATG 486759
>seq6415
Length=247467
Score = 150 bits (166), Expect = 3e-31
Identities = 181/241 (75%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAA-CTTGCA 99010
||||| || || || |||||||| | ||||||| ||||| || ||| | || ||
Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028
Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAAC 99069
| | || |||||| | | || ||||| | ||| |||||||||| || ||| || |
Sbjct 53029 A-AGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGC-ACCTGCGCTCGATCATCATCGAGC 53086
Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129
|||||||||||||||| ||||||||||| ||| ||||| || || || || || ||
Sbjct 53087 TGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCA 53146
Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGC 99189
| |||||||| ||||| ||| |||| ||||| || || ||||| ||||| ||||||||||
Sbjct 53147 TCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGC 53206
Query 99190 G 99190
|
Sbjct 53207 G 53207
>seq9639
Length=103419
Score = 125 bits (138), Expect = 1e-23
Identities = 177/246 (72%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005
|||| ||||||||||| || ||||||| | ||||||||||||||||| ||| ||
Sbjct 4300 AAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGAC 4241
Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCA 99064
|| ||||| || |||||||| || |||||| | ||| |||| || || ||||
Sbjct 4240 CTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGC-ACCTCAAGTCCATCATCCT 4182
Query 99065 TGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGT 99124
|||||||||||||||||| ||||||| |||| | | | ||| | || ||
Sbjct 4181 GGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTG 4122
Query 99125 AACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCA 99184
||||| |||||||||||||| | | | |||||||| || ||||| || || |||
Sbjct 4121 CACCATCTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCA 4062
Query 99185 GTGGCG 99190
|||||
Sbjct 4061 ATGGCG 4056
Score = 84.2 bits (92), Expect = 3e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 99594 TGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCGCGTCG 99653
|| ||||| || ||||| || || ||| | ||| |||| || || || ||||||||
Sbjct 3871 TGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 3812
Query 99654 TATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGGGCGATTTCGT 99712
|| || || |||| |||||| | || ||||| |||| ||| ||||||||| ||| |
Sbjct 3811 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACC-TGGAGGTGGGCGACTTCAT 3753
Query 99713 CTGGACCGGCGGTGA 99727
|||||||||||| ||
Sbjct 3752 CTGGACCGGCGGCGA 3738
>seq11739
Length=237542
Score = 116 bits (128), Expect = 5e-21
Identities = 134/178 (75%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644
||||||||||| || || ||||| |||||||| || || ||||| || ||||| |||||
Sbjct 8959 AAGTTGTCTTGCCAACTTTATCAACGTAGTGCAGATGTTTTCTTAGGGGTGCCATTTAAT 8900
Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCAC-AGCAGGCGAATATGGCGGTGGG 99703
|| || ||||||||||||| ||| ||| |||| | || | | | ||| || ||
Sbjct 8899 ATTGCCAGCTATGCTCTACTGACTCATATGGTTGCTCAAGTTTGTGGTTTAGGC-GTAGG 8841
Query 99704 CGATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCA 99761
||||| |||||||| ||||||||| ||| | ||| ||||||| | ||||| |||
Sbjct 8840 TGATTTTGTCTGGACTGGCGGTGATACACATTTATATGTTAACCATTTTGAACAAGCA 8783
Score = 113 bits (124), Expect = 6e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011
|| ||||| |||||||| || | |||| | || || || || |||||||| ||||| |
Sbjct 9421 GATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTTGACTTGTCA 9362
Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071
|||| || ||||| |||| || || || | ||||| ||| | |||||||
Sbjct 9361 AAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTGATTGAACTG 9302
Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131
||||||||||| |||||||||||||| | || || || ||||| ||| || | |||
Sbjct 9301 CTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAAGTTTCGATT 9242
Query 99132 TGGGACGAATGG 99143
||||| ||||||
Sbjct 9241 TGGGATGAATGG 9230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716501902080360
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