Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021538.1 Length=59626 Score E Sequences producing significant alignments: (Bits) Value seq12569 250 9e-62 seq6089 206 1e-48 >seq12569 Length=80069 Score = 250 bits (276), Expect = 9e-62 Identities = 361/510 (71%), Gaps = 12/510 (2%) Strand=Plus/Minus Query 46571 GTGGATCTGATCGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 46630 |||| |||||||||||| || |||||||| | || |||||||| |||||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 46631 AACGACTTCGGCCACACCGACAACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACA 46690 ||| ||||| ||||||||| |||||| || ||||||| |||||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 46691 CCGCAGCTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 46750 ||| ||||||||||| | ||| |||||||||| | |||| |||||| |||||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 46751 ATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACGGTGTCACCCTTCCACGCCGA- 46809 ||| || || | |||||| |||| | | || || | || ||| | ||| Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459 Query 46810 -----GGCGATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTC 46864 |||| |||| ||||| |||||||| |||||||||| | ||| | Sbjct 62458 TGCCGGGCGTGCTTC------CGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 46865 ATCACCGATGTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGC 46924 | ||||| || ||||| || ||||||||||| || |||||||||||| ||||||||| Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345 Query 46925 AAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGTTGTTCCACAAACCG 46984 || |||| | ||||||| ||| |||||| | | ||| |||||| ||| ||| Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285 Query 46985 CAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCCAAGGACGACTAC 47044 | | ||| ||| || || ||||||||| || || | || |||||| |||| Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGCTAC 62225 Query 47045 ACCCGTGCCCGTTGGCAGGTGGACGCGCAC 47074 | ||| || || |||||| | ||||||||| Sbjct 62224 AGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 188 bits (208), Expect = 3e-43 Identities = 417/612 (68%), Gaps = 15/612 (2%) Strand=Plus/Minus Query 45236 TTCGCGGCGTTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATTGTCCGCCTGTCCCTG 45295 ||||| || ||||| |||| || | || | ||||||||||||| ||| || Sbjct 64021 TTCGCCGCCTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTG--CGCGGATCATGC 63964 Query 45296 GCGAAGCACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTC 45355 |||| | | |||||| | || |||||||| || ||||| || |||||| |||||| Sbjct 63963 GCGA-GATCTCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTC 63905 Query 45356 GCCCACGACGCCCAAATGCTGGGCATCGAAACCCGGTTCGTTCGCCGTACAGAAGAAGT- 45414 | |||||| ||||||||| | ||||||| |||| || | || || | Sbjct 63904 ATGCGGGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCG 63845 Query 45415 --CGGTGGCGACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGAC 45472 || | || || |||| || |||||||| |||| || || ||||| ||| | ||| Sbjct 63844 GACGATCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGAC 63785 Query 45473 CCGACACTGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGG 45528 || | ||||| | ||| || || || || ||||||||||| |||| | ||| ||| Sbjct 63784 CCATC-CTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGG 63726 Query 45529 GTCCAAGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGC 45588 |||||||| | | |||| | ||||||||| ||| |||| || | |||||| Sbjct 63725 CTCCAAGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGC 63666 Query 45589 GACGGCCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGCTATCTCGG 45648 |||||||||||||| || ||| | || |||||| | ||| ||| | || || Sbjct 63665 CACGGCCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGG 63606 Query 45649 GGTGATGGACACCGGGGCAGCGCTCACGCGTTGGTTCCAGCGGGACT-CGACGAAGGCGA 45707 |||||||| |||| || || || | |||| ||| ||| ||| | | ||| Sbjct 63605 CGTGATGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGA 63546 Query 45708 ACAACCTCACCCTCTACCCACACAAGGAGCGCGAGTTCTGGCTGTGGCTGAACACG-TGG 45766 | ||||||||| |||| ||||| ||||||||||||||||||||| || || | ||| Sbjct 63545 -CGCCCTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGG 63488 Query 45767 GCTGCGTTCGTGCAATCACCGGCCGACCTAGGTCACGACGCCACCGGCTATGACCTGCCG 45826 | | |||||| || ||| ||| || || | || | |||||| ||||||||| Sbjct 63487 GGTCTGTTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCG 63428 Query 45827 CCGCTGGAGGTG 45838 || ||| ||||| Sbjct 63427 CCCCTGCAGGTG 63416 Score = 84.2 bits (92), Expect = 8e-12 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 48350 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 48409 |||||| ||| ||||| ||||| ||||||||||||| | | || | || ||||| Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850 Query 48410 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTTGGT 48469 |||||||||| ||||||||||| ||| |||||||| | || || | || | || Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790 Query 48470 CGGCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTACCTA 48529 || |||| | | |||| |||| || | ||||| |||| | ||| ||| || | Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730 Query 48530 CAGGC--TGAAGAGCGTCAGCGCGACATGCCCAGTCTGTTCGACCTG 48574 |||| || | ||| | ||||| ||| | || ||||||||| Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCTG 61685 >seq6089 Length=13452 Score = 206 bits (228), Expect = 1e-48 Identities = 465/693 (67%), Gaps = 32/693 (5%) Strand=Plus/Minus Query 45185 CACCAACGCGATCTGGTGCGTTGGGCTGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 45244 ||||| ||| ||||| || |||||||||| || ||||| || ||||||||||| ||| Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714 Query 45245 TTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATTGTCCGCCTGTCCCTGGCGA--AGC 45302 ||||| |||||||| |||| |||||| ||||||| | |||| | | ||||| ||| Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGC 4656 Query 45303 ACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 45362 |||||| | | |||||||| |||||||| |||| |||||| ||| | || Sbjct 4655 TGGGCGGCCGGCAG---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599 Query 45363 ACGCCCAAATGCTGGGCATCGAAACCCGGTTCGTTCGCCGTACAGA--AGAAGTCGGTGG 45420 |||| | ||||||||| | || | ||| | ||| |||| | ||| ||| || Sbjct 4598 ACGCGCTGATGCTGGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGC 4539 Query 45421 CGACGGAA----------------TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAA 45464 |||| | || || ||||||||||| ||||||||| || | Sbjct 4538 ATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCA 4479 Query 45465 AGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGT 45521 || | |||| ||| | |||| |||| || || || || || | |||| ||||| Sbjct 4478 AGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGT 4420 Query 45522 CTTT-CGGGTCCAAGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGG 45580 || ||| ||||||| | || |||| | |||||||||||| ||| || | Sbjct 4419 TTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAG 4360 Query 45581 TACGTCGCGACGGCCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGC 45640 | ||||| |||||||||||||| |||||| || | |||||| | ||| || | | Sbjct 4359 TTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCC 4300 Query 45641 TATCTCGGGGTGATGGACACCGGGGCAGCGCTCACGCGTTGGTTCCAGCGGGACT-CGAC 45699 | || | | | ||||| ||| || || || | ||| ||||| || ||| Sbjct 4299 TTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGA- 4241 Query 45700 GAAGGCGAACAACCTCACCCTCTACCCACACAAGGAGCGCGAGTTCTGGCTGTGGCTGAA 45759 |||||| || | || ||| || | || |||||||| || |||||||||||| |||| Sbjct 4240 GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAA 4181 Query 45760 CACGTGGGCTGCGTTCGTGCAATCACCGGCCGACCTAGGTCACGACGCCACCGGCTATGA 45819 | ||||| || ||||| || ||| ||| || ||| || | |||||||| Sbjct 4180 TAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGA 4121 Query 45820 CCTGCCGCCGCTGGAGGTGTTGTGGCATGAGGT 45852 |||||| |||||| ||| ||||||||||| Sbjct 4120 CCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088 Score = 150 bits (166), Expect = 7e-32 Identities = 309/455 (68%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 46577 CTGATCGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 46636 ||||| ||||||||| | || || || ||| || || || |||||||||| || || Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 46637 TTCGGCCACACCGACAACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAG 46696 |||||||| |||||| | ||| || |||| |||||||||||| || || || || Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 46697 CTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 46756 ||||||||| || | ||||||||| | || || || ||||| ||| | || Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198 Query 46757 TTCGGAAACG--TCACCGGCGCCGGCGTGCCCACGGTGTCACCCTTCCACGC-CGAGGCG 46813 ||| | | | || || ||| | | |||| | || ||||| || || || Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139 Query 46814 ATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCATCACCGAT 46873 ||| || ||| || ||||||| ||| || |||||| | || || |||||||| Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079 Query 46874 GTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGCAAAGACGCC 46933 || || || || || || || |||||||||||| | ||||||||||| || ||| Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019 Query 46934 ACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGTTGTTCCACAAACCGCAAACAGAC 46993 | | |||||||||||| || ||||| | || |||||| ||| |||| || ||| Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959 Query 46994 AGGTCGAAGGGATACGCCGACACACCCGTCACCAA 47028 || || || || ||||| || |||||||| Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190647501243704