Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021538.1
Length=59626
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 250 9e-62
seq6089 206 1e-48
>seq12569
Length=80069
Score = 250 bits (276), Expect = 9e-62
Identities = 361/510 (71%), Gaps = 12/510 (2%)
Strand=Plus/Minus
Query 46571 GTGGATCTGATCGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 46630
|||| |||||||||||| || |||||||| | || |||||||| |||||| ||||
Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639
Query 46631 AACGACTTCGGCCACACCGACAACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACA 46690
||| ||||| ||||||||| |||||| || ||||||| |||||||||| ||| |
Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579
Query 46691 CCGCAGCTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 46750
||| ||||||||||| | ||| |||||||||| | |||| |||||| ||||||||
Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519
Query 46751 ATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACGGTGTCACCCTTCCACGCCGA- 46809
||| || || | |||||| |||| | | || || | || ||| | |||
Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459
Query 46810 -----GGCGATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTC 46864
|||| |||| ||||| |||||||| |||||||||| | ||| |
Sbjct 62458 TGCCGGGCGTGCTTC------CGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405
Query 46865 ATCACCGATGTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGC 46924
| ||||| || ||||| || ||||||||||| || |||||||||||| |||||||||
Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345
Query 46925 AAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGTTGTTCCACAAACCG 46984
|| |||| | ||||||| ||| |||||| | | ||| |||||| ||| |||
Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285
Query 46985 CAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCCAAGGACGACTAC 47044
| | ||| ||| || || ||||||||| || || | || |||||| ||||
Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGCTAC 62225
Query 47045 ACCCGTGCCCGTTGGCAGGTGGACGCGCAC 47074
| ||| || || |||||| | |||||||||
Sbjct 62224 AGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 188 bits (208), Expect = 3e-43
Identities = 417/612 (68%), Gaps = 15/612 (2%)
Strand=Plus/Minus
Query 45236 TTCGCGGCGTTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATTGTCCGCCTGTCCCTG 45295
||||| || ||||| |||| || | || | ||||||||||||| ||| ||
Sbjct 64021 TTCGCCGCCTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTG--CGCGGATCATGC 63964
Query 45296 GCGAAGCACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTC 45355
|||| | | |||||| | || |||||||| || ||||| || |||||| ||||||
Sbjct 63963 GCGA-GATCTCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTC 63905
Query 45356 GCCCACGACGCCCAAATGCTGGGCATCGAAACCCGGTTCGTTCGCCGTACAGAAGAAGT- 45414
| |||||| ||||||||| | ||||||| |||| || | || || |
Sbjct 63904 ATGCGGGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCG 63845
Query 45415 --CGGTGGCGACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGAC 45472
|| | || || |||| || |||||||| |||| || || ||||| ||| | |||
Sbjct 63844 GACGATCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGAC 63785
Query 45473 CCGACACTGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGG 45528
|| | ||||| | ||| || || || || ||||||||||| |||| | ||| |||
Sbjct 63784 CCATC-CTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGG 63726
Query 45529 GTCCAAGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGC 45588
|||||||| | | |||| | ||||||||| ||| |||| || | ||||||
Sbjct 63725 CTCCAAGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGC 63666
Query 45589 GACGGCCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGCTATCTCGG 45648
|||||||||||||| || ||| | || |||||| | ||| ||| | || ||
Sbjct 63665 CACGGCCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGG 63606
Query 45649 GGTGATGGACACCGGGGCAGCGCTCACGCGTTGGTTCCAGCGGGACT-CGACGAAGGCGA 45707
|||||||| |||| || || || | |||| ||| ||| ||| | | |||
Sbjct 63605 CGTGATGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGA 63546
Query 45708 ACAACCTCACCCTCTACCCACACAAGGAGCGCGAGTTCTGGCTGTGGCTGAACACG-TGG 45766
| ||||||||| |||| ||||| ||||||||||||||||||||| || || | |||
Sbjct 63545 -CGCCCTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGG 63488
Query 45767 GCTGCGTTCGTGCAATCACCGGCCGACCTAGGTCACGACGCCACCGGCTATGACCTGCCG 45826
| | |||||| || ||| ||| || || | || | |||||| |||||||||
Sbjct 63487 GGTCTGTTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCG 63428
Query 45827 CCGCTGGAGGTG 45838
|| ||| |||||
Sbjct 63427 CCCCTGCAGGTG 63416
Score = 84.2 bits (92), Expect = 8e-12
Identities = 156/227 (69%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 48350 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 48409
|||||| ||| ||||| ||||| ||||||||||||| | | || | || |||||
Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850
Query 48410 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTTGGT 48469
|||||||||| ||||||||||| ||| |||||||| | || || | || | ||
Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790
Query 48470 CGGCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTACCTA 48529
|| |||| | | |||| |||| || | ||||| |||| | ||| ||| || |
Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730
Query 48530 CAGGC--TGAAGAGCGTCAGCGCGACATGCCCAGTCTGTTCGACCTG 48574
|||| || | ||| | ||||| ||| | || |||||||||
Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCTG 61685
>seq6089
Length=13452
Score = 206 bits (228), Expect = 1e-48
Identities = 465/693 (67%), Gaps = 32/693 (5%)
Strand=Plus/Minus
Query 45185 CACCAACGCGATCTGGTGCGTTGGGCTGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 45244
||||| ||| ||||| || |||||||||| || ||||| || ||||||||||| |||
Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714
Query 45245 TTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATTGTCCGCCTGTCCCTGGCGA--AGC 45302
||||| |||||||| |||| |||||| ||||||| | |||| | | ||||| |||
Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGC 4656
Query 45303 ACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 45362
|||||| | | |||||||| |||||||| |||| |||||| ||| | ||
Sbjct 4655 TGGGCGGCCGGCAG---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599
Query 45363 ACGCCCAAATGCTGGGCATCGAAACCCGGTTCGTTCGCCGTACAGA--AGAAGTCGGTGG 45420
|||| | ||||||||| | || | ||| | ||| |||| | ||| ||| ||
Sbjct 4598 ACGCGCTGATGCTGGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGC 4539
Query 45421 CGACGGAA----------------TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAA 45464
|||| | || || ||||||||||| ||||||||| || |
Sbjct 4538 ATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCA 4479
Query 45465 AGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGT 45521
|| | |||| ||| | |||| |||| || || || || || | |||| |||||
Sbjct 4478 AGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGT 4420
Query 45522 CTTT-CGGGTCCAAGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGG 45580
|| ||| ||||||| | || |||| | |||||||||||| ||| || |
Sbjct 4419 TTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAG 4360
Query 45581 TACGTCGCGACGGCCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGC 45640
| ||||| |||||||||||||| |||||| || | |||||| | ||| || | |
Sbjct 4359 TTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCC 4300
Query 45641 TATCTCGGGGTGATGGACACCGGGGCAGCGCTCACGCGTTGGTTCCAGCGGGACT-CGAC 45699
| || | | | ||||| ||| || || || | ||| ||||| || |||
Sbjct 4299 TTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGA- 4241
Query 45700 GAAGGCGAACAACCTCACCCTCTACCCACACAAGGAGCGCGAGTTCTGGCTGTGGCTGAA 45759
|||||| || | || ||| || | || |||||||| || |||||||||||| ||||
Sbjct 4240 GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAA 4181
Query 45760 CACGTGGGCTGCGTTCGTGCAATCACCGGCCGACCTAGGTCACGACGCCACCGGCTATGA 45819
| ||||| || ||||| || ||| ||| || ||| || | ||||||||
Sbjct 4180 TAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGA 4121
Query 45820 CCTGCCGCCGCTGGAGGTGTTGTGGCATGAGGT 45852
|||||| |||||| ||| |||||||||||
Sbjct 4120 CCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088
Score = 150 bits (166), Expect = 7e-32
Identities = 309/455 (68%), Gaps = 6/455 (1%)
Strand=Plus/Minus
Query 46577 CTGATCGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 46636
||||| ||||||||| | || || || ||| || || || |||||||||| || ||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 46637 TTCGGCCACACCGACAACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAG 46696
|||||||| |||||| | ||| || |||| |||||||||||| || || || ||
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 46697 CTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 46756
||||||||| || | ||||||||| | || || || ||||| ||| | ||
Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198
Query 46757 TTCGGAAACG--TCACCGGCGCCGGCGTGCCCACGGTGTCACCCTTCCACGC-CGAGGCG 46813
||| | | | || || ||| | | |||| | || ||||| || || ||
Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139
Query 46814 ATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCATCACCGAT 46873
||| || ||| || ||||||| ||| || |||||| | || || ||||||||
Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079
Query 46874 GTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGCAAAGACGCC 46933
|| || || || || || || |||||||||||| | ||||||||||| || |||
Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019
Query 46934 ACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGTTGTTCCACAAACCGCAAACAGAC 46993
| | |||||||||||| || ||||| | || |||||| ||| |||| || |||
Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959
Query 46994 AGGTCGAAGGGATACGCCGACACACCCGTCACCAA 47028
|| || || || ||||| || ||||||||
Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190647501243704
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