Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021557.1 Length=37378 Score E Sequences producing significant alignments: (Bits) Value seq9622 187 6e-43 seq10909 149 1e-31 seq7272 93.3 1e-14 >seq9622 Length=151425 Score = 187 bits (206), Expect = 6e-43 Identities = 323/462 (70%), Gaps = 13/462 (3%) Strand=Plus/Minus Query 36266 TATGCGGAAGTCTTCGTCGGTATGGGTGGCGTCTTCCTCCGCCGTGATCTCCAGCCTCGT 36325 ||||| ||||| || || || ||||||||||||||| | || || | | ||| || Sbjct 80148 TATGCCGAAGTTTTTGTTGGCATGGGTGGCGTCTTCTTTCGTCGACGGCAGCGGCCGCGG 80089 Query 36326 ATTGAAGTCATCAACGATATCAGCGGCGATGTGGCTAATCTGTTCCGTATTCTCCAGCGC 36385 || || |||||||| ||||||||| ||||| || |||||||| || || ||||| Sbjct 80088 TCAGAGGTGATCAACGACCGCAGCGGCGAGGTGGCGAACCTGTTCCGCATCCTGCAGCGG 80029 Query 36386 CACTATCCGCAGTTTATGGAAACCCTTCGGTTCCAGATCACGTCACGACGCGAGTTCGAA 36445 ||||||||||||||| |||| || || || ||||||||||| || || ||||| Sbjct 80028 CACTATCCGCAGTTTTTGGACACGCTGCGTTTCCAGATCACCGGCCGCAAGGAATTCGAG 79969 Query 36446 CGGCTCTCGAAAG---TCGATCCTTCGACGCTAACCGACCTGGAGCGCGCCGCTCGCTTC 36502 ||||| ||| | |||||| |||||| ||||| ||||||| || | || || Sbjct 79968 CGGCT---GAAGGCGTCCGATCCGGTGACGCTGACCGATTTGGAGCGGGCAGGCCGTTTT 79912 Query 36503 CTCTATCTCCAGCGCACTGCCTTCGGCGGTAAGGTTGCGGGGCAAAACTTCGGCGT-GA- 36560 ||||| || || || | ||||| ||||| |||||| | || | |||||||||||| || Sbjct 79911 CTCTACCTTCAACGGATCGCCTTTGGCGGCAAGGTTTCCGGTCGAAACTTCGGCGTCGAC 79852 Query 36561 -CGATGACCGGCGCTCGCTTCAATCTTCTGAAACTCGCCCCCCAACTGGAAGCGATCCAC 36619 || | |||| | ||||| || | | | || | |||| | | || Sbjct 79851 CCGGGCTCGGGCGGTGCATTCAACCTGTCGCGCTTGGAGCCGCTCCTGGCCGACGTGCAT 79792 Query 36620 GAGCGGATGGCAGGTGTTGTCATCGA--GCAGTTGCCATGGCGAAAATTTGTCGAGCGCT 36677 ||||| | || || || || ||||| || ||| | |||| | || |||| |||| Sbjct 79791 GAGCGTCTCGCCGGCGTGGTGATCGAATGC-CTTGAC-TGGCTGGACTTCATCGATCGCT 79734 Query 36678 ATGATCGGCCGGGGATGCTTTTTTATCTCGATCCGCCCTATT 36719 | || ||||||| || ||| || ||||||||||| ||||||| Sbjct 79733 ACGACCGGCCGGAGACGCTGTTCTATCTCGATCCACCCTATT 79692 >seq10909 Length=24258 Score = 149 bits (164), Expect = 1e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 35243 TCATACTTATCCGAGCGACATCAAAGCCCAAATCAATTTGATGGGTTCTGTGACGGACAG 35302 ||| || ||||| ||||||||||||||||||||||| | ||||| ||||| || ||||| Sbjct 24026 TCACACCTATCCAAGCGACATCAAAGCCCAAATCAACCTCATGGGCTCTGTCACCGACAG 24085 Query 35303 CATCATGCCCGATCTCCCGCCCGACTGGCAAACGCCATTCTGGGTCTGTGATGTCGCCGG 35362 | | ||||| ||||| || | || ||| || || |||||||| ||||||| || || Sbjct 24086 CTTGATGCCTGATCTGCCTGCAGATTGGAGTACTCCGTTCTGGGTATGTGATGCAGCGGG 24145 Query 35363 TTTGTGGAGCTGGAAAATGCACAACGCCACGCAAATCCAGCAGGCCGGTCGAGACGGCAA 35422 |||| ||| | ||||||||| | || ||||||||||| || ||||||||||| Sbjct 24146 CAATTGGAAATGGGAGGCTCACAACGCCTCTCAGATCCAGCAGGCAGGGCGAGACGGCAA 24205 Query 35423 GGCACATGTCGTAGTCTGCCAGACGACGCTCGCCACACTCACGGCCACTGTC 35474 ||| || || | | ||||| | ||||| | ||| ||||| ||||| Sbjct 24206 GGCCGCAGTGGTGGCCGCGCAGACCAAGCTCGGCGAACTTACGGCTGCTGTC 24257 >seq7272 Length=98981 Score = 93.3 bits (102), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 20695 GCACCATCCG---TTTCGGCAAGGAAAGCTTCCGTCTGCTCAACACCCGCCGTGCGCCGG 20751 ||||||||| ||||||| || ||||| || ||| | ||||| ||||||||| | Sbjct 75681 GCACCATCCTGGTTTTCGGCCCTGAGAGCTTTCGCCTGGTGAACACGGCCCGTGCGCCCG 75740 Query 20752 GTGCCGACCGCAAGCGCATCCAGTACGGCTATGCCGATGATCCGGTGTCGCTGGCGCAGG 20811 |||| || ||||||||||||| ||||||||| | | | ||||||| | | Sbjct 75741 GTGCGAACACCAAGCGCATCCAGCTGGGCTATGCCAAGGGCAAGTACTCGCTGGTGGATC 75800 Query 20812 ACAGCCTTGAAGCGGTTGTTCCGACCGAACATCAGCAGGAGGCCGAAATCATTCCCGGCA 20871 || |||| |||| || || | ||| || | |||| ||| | | ||||||||| Sbjct 75801 ACCGCCTGGAAGGCCAAGTCCCCATCGAGAATGAAGAGGAAGCCCAGGCCGTTCCCGGCA 75860 Query 20872 TCGACCTTGCGGCCGGGGCCGTCAACATGGTGCTGGATGT 20911 ||||| | | ||| ||| ||||||| ||||| ||| || Sbjct 75861 TCGACATGGGCGCCATGGCGGTCAACACGGTGCAGGACGT 75900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119466632483720