Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021557.1
Length=37378
Score E
Sequences producing significant alignments: (Bits) Value
seq9622 187 6e-43
seq10909 149 1e-31
seq7272 93.3 1e-14
>seq9622
Length=151425
Score = 187 bits (206), Expect = 6e-43
Identities = 323/462 (70%), Gaps = 13/462 (3%)
Strand=Plus/Minus
Query 36266 TATGCGGAAGTCTTCGTCGGTATGGGTGGCGTCTTCCTCCGCCGTGATCTCCAGCCTCGT 36325
||||| ||||| || || || ||||||||||||||| | || || | | ||| ||
Sbjct 80148 TATGCCGAAGTTTTTGTTGGCATGGGTGGCGTCTTCTTTCGTCGACGGCAGCGGCCGCGG 80089
Query 36326 ATTGAAGTCATCAACGATATCAGCGGCGATGTGGCTAATCTGTTCCGTATTCTCCAGCGC 36385
|| || |||||||| ||||||||| ||||| || |||||||| || || |||||
Sbjct 80088 TCAGAGGTGATCAACGACCGCAGCGGCGAGGTGGCGAACCTGTTCCGCATCCTGCAGCGG 80029
Query 36386 CACTATCCGCAGTTTATGGAAACCCTTCGGTTCCAGATCACGTCACGACGCGAGTTCGAA 36445
||||||||||||||| |||| || || || ||||||||||| || || |||||
Sbjct 80028 CACTATCCGCAGTTTTTGGACACGCTGCGTTTCCAGATCACCGGCCGCAAGGAATTCGAG 79969
Query 36446 CGGCTCTCGAAAG---TCGATCCTTCGACGCTAACCGACCTGGAGCGCGCCGCTCGCTTC 36502
||||| ||| | |||||| |||||| ||||| ||||||| || | || ||
Sbjct 79968 CGGCT---GAAGGCGTCCGATCCGGTGACGCTGACCGATTTGGAGCGGGCAGGCCGTTTT 79912
Query 36503 CTCTATCTCCAGCGCACTGCCTTCGGCGGTAAGGTTGCGGGGCAAAACTTCGGCGT-GA- 36560
||||| || || || | ||||| ||||| |||||| | || | |||||||||||| ||
Sbjct 79911 CTCTACCTTCAACGGATCGCCTTTGGCGGCAAGGTTTCCGGTCGAAACTTCGGCGTCGAC 79852
Query 36561 -CGATGACCGGCGCTCGCTTCAATCTTCTGAAACTCGCCCCCCAACTGGAAGCGATCCAC 36619
|| | |||| | ||||| || | | | || | |||| | | ||
Sbjct 79851 CCGGGCTCGGGCGGTGCATTCAACCTGTCGCGCTTGGAGCCGCTCCTGGCCGACGTGCAT 79792
Query 36620 GAGCGGATGGCAGGTGTTGTCATCGA--GCAGTTGCCATGGCGAAAATTTGTCGAGCGCT 36677
||||| | || || || || ||||| || ||| | |||| | || |||| ||||
Sbjct 79791 GAGCGTCTCGCCGGCGTGGTGATCGAATGC-CTTGAC-TGGCTGGACTTCATCGATCGCT 79734
Query 36678 ATGATCGGCCGGGGATGCTTTTTTATCTCGATCCGCCCTATT 36719
| || ||||||| || ||| || ||||||||||| |||||||
Sbjct 79733 ACGACCGGCCGGAGACGCTGTTCTATCTCGATCCACCCTATT 79692
>seq10909
Length=24258
Score = 149 bits (164), Expect = 1e-31
Identities = 172/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 35243 TCATACTTATCCGAGCGACATCAAAGCCCAAATCAATTTGATGGGTTCTGTGACGGACAG 35302
||| || ||||| ||||||||||||||||||||||| | ||||| ||||| || |||||
Sbjct 24026 TCACACCTATCCAAGCGACATCAAAGCCCAAATCAACCTCATGGGCTCTGTCACCGACAG 24085
Query 35303 CATCATGCCCGATCTCCCGCCCGACTGGCAAACGCCATTCTGGGTCTGTGATGTCGCCGG 35362
| | ||||| ||||| || | || ||| || || |||||||| ||||||| || ||
Sbjct 24086 CTTGATGCCTGATCTGCCTGCAGATTGGAGTACTCCGTTCTGGGTATGTGATGCAGCGGG 24145
Query 35363 TTTGTGGAGCTGGAAAATGCACAACGCCACGCAAATCCAGCAGGCCGGTCGAGACGGCAA 35422
|||| ||| | ||||||||| | || ||||||||||| || |||||||||||
Sbjct 24146 CAATTGGAAATGGGAGGCTCACAACGCCTCTCAGATCCAGCAGGCAGGGCGAGACGGCAA 24205
Query 35423 GGCACATGTCGTAGTCTGCCAGACGACGCTCGCCACACTCACGGCCACTGTC 35474
||| || || | | ||||| | ||||| | ||| ||||| |||||
Sbjct 24206 GGCCGCAGTGGTGGCCGCGCAGACCAAGCTCGGCGAACTTACGGCTGCTGTC 24257
>seq7272
Length=98981
Score = 93.3 bits (102), Expect = 1e-14
Identities = 153/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 20695 GCACCATCCG---TTTCGGCAAGGAAAGCTTCCGTCTGCTCAACACCCGCCGTGCGCCGG 20751
||||||||| ||||||| || ||||| || ||| | ||||| ||||||||| |
Sbjct 75681 GCACCATCCTGGTTTTCGGCCCTGAGAGCTTTCGCCTGGTGAACACGGCCCGTGCGCCCG 75740
Query 20752 GTGCCGACCGCAAGCGCATCCAGTACGGCTATGCCGATGATCCGGTGTCGCTGGCGCAGG 20811
|||| || ||||||||||||| ||||||||| | | | ||||||| | |
Sbjct 75741 GTGCGAACACCAAGCGCATCCAGCTGGGCTATGCCAAGGGCAAGTACTCGCTGGTGGATC 75800
Query 20812 ACAGCCTTGAAGCGGTTGTTCCGACCGAACATCAGCAGGAGGCCGAAATCATTCCCGGCA 20871
|| |||| |||| || || | ||| || | |||| ||| | | |||||||||
Sbjct 75801 ACCGCCTGGAAGGCCAAGTCCCCATCGAGAATGAAGAGGAAGCCCAGGCCGTTCCCGGCA 75860
Query 20872 TCGACCTTGCGGCCGGGGCCGTCAACATGGTGCTGGATGT 20911
||||| | | ||| ||| ||||||| ||||| ||| ||
Sbjct 75861 TCGACATGGGCGCCATGGCGGTCAACACGGTGCAGGACGT 75900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119466632483720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |