Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021772.1
Length=72394
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 102 4e-17
>seq11759
Length=158816
Score = 102 bits (112), Expect = 4e-17
Identities = 214/315 (68%), Gaps = 3/315 (1%)
Strand=Plus/Minus
Query 12396 AATTGAAACCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCATCTGGACGATG 12455
||||||| || ||| |||| ||| || |||| ||| |||| ||| || | || |||
Sbjct 86506 AATTGAA-CCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATA 86448
Query 12456 TACATGTAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACATGGTGTAGTGC 12515
|| | |||| | || | || ||||| || | |||||||| ||||| | ||
Sbjct 86447 CTAATTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTAT 86388
Query 12516 TTGGGAACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTATGGTAAGCCTCT 12575
| || ||| | ||| | ||||||||||||||||| || ||| | ||||| | |
Sbjct 86387 TGGGCAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTT 86328
Query 12576 GGAATCGCTCTACAGAGC-CTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTA 12634
||||||| | || | | | |||||| | | || ||||| ||| | || ||| ||
Sbjct 86327 GGAATCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTT 86269
Query 12635 ATCGTGCCTGTAATGCAGCCTGAGTTCGTTGTAGTGGATTCATTTGAATCTACTGAACGT 12694
| ||||||||| | || | | || | | | || | ||||||| | |||||||||
Sbjct 86268 TTGGTGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGT 86209
Query 12695 GGTGCTGGTGGCTTT 12709
||||||||||| |||
Sbjct 86208 GGTGCTGGTGGTTTT 86194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 231493505836145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |