Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq11759 102 4e-17 >seq11759 Length=158816 Score = 102 bits (112), Expect = 4e-17 Identities = 214/315 (68%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 12396 AATTGAAACCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCATCTGGACGATG 12455 ||||||| || ||| |||| ||| || |||| ||| |||| ||| || | || ||| Sbjct 86506 AATTGAA-CCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATA 86448 Query 12456 TACATGTAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACATGGTGTAGTGC 12515 || | |||| | || | || ||||| || | |||||||| ||||| | || Sbjct 86447 CTAATTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTAT 86388 Query 12516 TTGGGAACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTATGGTAAGCCTCT 12575 | || ||| | ||| | ||||||||||||||||| || ||| | ||||| | | Sbjct 86387 TGGGCAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTT 86328 Query 12576 GGAATCGCTCTACAGAGC-CTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTA 12634 ||||||| | || | | | |||||| | | || ||||| ||| | || ||| || Sbjct 86327 GGAATCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTT 86269 Query 12635 ATCGTGCCTGTAATGCAGCCTGAGTTCGTTGTAGTGGATTCATTTGAATCTACTGAACGT 12694 | ||||||||| | || | | || | | | || | ||||||| | ||||||||| Sbjct 86268 TTGGTGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGT 86209 Query 12695 GGTGCTGGTGGCTTT 12709 ||||||||||| ||| Sbjct 86208 GGTGCTGGTGGTTTT 86194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231493505836145