Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq7272 228 2e-55 >seq7272 Length=98981 Score = 228 bits (252), Expect = 2e-55 Identities = 650/985 (66%), Gaps = 23/985 (2%) Strand=Plus/Minus Query 1492 CACCAACTGGAATACGCCGAGACCGAGGCCGGTCGCGTCAATGCCGATGTATTCGACGTT 1551 ||| | ||| | ||||| | || || || || | ||||||| ||||| | | ||||| Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007 Query 1552 GTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCA 1611 ||||||||| || | | ||||||| |||| |||||||| |||||||| || || | Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947 Query 1612 CTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGAC 1671 ||| |||||||||||||| |||||||| |||| | ||||| || || || || Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887 Query 1672 ACATCCGGCACTGTCGCCAGTGTGGGACGGGTCGTAGCCAATCCAGACCGGGCGCGAGCC 1731 | || || |||||| || ||| ||||| |||||||||||||| || ||| Sbjct 41886 AAGGCCCGCCGAGTCGCCCGTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCC 41827 Query 1732 GAACGGGTGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCA 1791 ||||| | | ||| || ||| || ||| | ||| ||| | ||| Sbjct 41826 AAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCA 41767 Query 1792 GCGCTGCAGCTCCTCGAACGGGAATAC--CGATGCCTTATCGTCGACAAACTCGCACATA 1849 |||| |||| | |||||| || ||| | | || ||||||||| ||||||| Sbjct 41766 GCGCATCAGCGTGGACAGCGGGAAAACAGCGAAG--GTGTCATCGACAAACCCGCACATG 41709 Query 1850 AACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGG 1909 | |||||| | | ||||| || | ||| | || | ||| ||||||||||| Sbjct 41708 AGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGA 41649 Query 1910 GTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTC-CGTCAGC 1968 ||||||| ||| | || ||| | ||||||||||||||||| | || ||| | Sbjct 41648 TTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCA-TATCTTGTCCTC 41590 Query 1969 G-CAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAG 2027 | | |||||| | | | | ||| || || | ||| | || ||||||| | Sbjct 41589 GCCGGTGAAGCCTCCAGCCAGGTGCG-AATGGCTCAGGTCCAGCTCTATGCGGT---CCT 41534 Query 2028 CACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCA 2087 |||||||| |||||||| | ||| | ||| | | ||| || |||| || Sbjct 41533 TTTTGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGCA 41474 Query 2088 GCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGATG 2147 | || || || ||||| || |||| |||||| || |||||| || | Sbjct 41473 GGCTGCTGGGCGTGGAAAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCTGG 41414 Query 2148 CGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGC 2207 | || || | ||||| | || || || ||| || | |||||||| ||| || | || Sbjct 41413 CCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTGC 41354 Query 2208 CGT--TATGGCTTTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTT 2265 ||| || | | || |||||| || | ||||| || ||| |||| | ||||| Sbjct 41353 CGTGGTACGAC--TGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCC--- 41299 Query 2266 GTTGCCGATAACAATCGGGTCGCCGGTCAGGTCGACGT--CAA--CCAGTCGCGCAAACT 2321 |||| | || || |||||||| ||| |||| | ||| | | | |||||| Sbjct 41298 ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTG-GCAAACG 41240 Query 2322 GGATGATGTATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGT 2381 ||||||||| | |||||| || | ||||||| |||||||| ||||||||||| | Sbjct 41239 CGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGAT 41180 Query 2382 TATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAA 2441 | |||| ||||| || || | ||| ||||||||| ||||| |||| || || | Sbjct 41179 TGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGA 41120 Query 2442 TCTGGCGGGATTTGAGAATATCGCG 2466 ||||||| ||||||||||| |||| Sbjct 41119 TCTGGCGCGATTTGAGAATGGCGCG 41095 Score = 118 bits (130), Expect = 2e-22 Identities = 265/393 (67%), Gaps = 14/393 (4%) Strand=Plus/Minus Query 298 CGCCCATGAGCTGGAACGGTACGCGGTGCGCATCCATCAGGTCGGCGGCGCTGGCTTTTT 357 ||||||||||||| || |||||||| || ||| |||| || ||| | || | Sbjct 43233 CGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCT 43174 Query 358 TGATGTTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAATGGCACGATTTTTATGCCGT 417 ||||||||||||| |||||||| | || |||||| | |||| | || ||| | | Sbjct 43173 TGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTT 43114 Query 418 CCGGTTTCCCGTTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGA-GCCCTTT--AG 474 | ||| ||| || || | ||||||||| || || ||||| | |||||| || Sbjct 43113 TCTCTTTGCCGCCGGGCGAATGGAAAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAG 43054 Query 475 AGTTACGCATTGCATCGCGCAGCGATTCGACGTCAGTCGCGCTTTGCGCC----GGGTCA 530 | || || || | |||||||| || || || ||| ||||| | || || Sbjct 43053 ATTT---CAAGGCCTGGCGCAGCGCATCCACATC-GTCT---TTTGCCACTTCGGGATCG 43001 Query 531 GTCACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGC 590 ||| ||| | |||||| || || || || || | ||||||| ||| || |||||| Sbjct 43000 CTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGC 42941 Query 591 GTCGCGGATTCATTCAGCCAGGCGGAATTAAGTGCGCTGAGATATTCAGGCAGGCCGTAA 650 || || || ||||| ||||||||||| | || ||| || || | ||||| || || Sbjct 42940 GTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAG 42881 Query 651 ATCTCCTGATTAATATCAGGCTCCAGCAGGTGG 683 || ||||| | | ||| |||| || | |||| Sbjct 42880 ATTTCCTGGTGCACATCGGGCTGGAGGATGTGG 42848 Score = 107 bits (118), Expect = 4e-19 Identities = 191/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 14919 CGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACATGTGGGCG--GTCGATA 14976 || || || ||||| ||||||||||| ||||| || | || | | | | ||||| | Sbjct 25072 CGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTCGACA 25015 Query 14977 AGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGCCAAATTCCGCG 15036 ||||||| | ||| | | ||||| || || |||||||||||||| ||||||| Sbjct 25014 AGCCCATGCACCCCAGCATGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGCG 24955 Query 15037 AGCTGAAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCGAACG 15096 | || || | ||||||||| | ||||| |||||| |||| || ||| Sbjct 24954 AACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAACA 24895 Query 15097 ACAAGGAAACCCTGAAAGCCGGGAAACTGTATATCGACTACGACTATACGCCGGTTCCGC 15156 || ||| | || || ||||| || ||| | ||||||||||| ||||| || |||| Sbjct 24894 CCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCGC 24835 Query 15157 CACTGGAGAGCCTGACCCTGCGCCAGCGTATCACCGA 15193 | ||||| |||| | |||||||| |||||||| Sbjct 24834 CGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95035802123632