Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021781.2 Length=135281 Score E Sequences producing significant alignments: (Bits) Value seq10153 284 1e-71 >seq10153 Length=9971 Score = 284 bits (314), Expect = 1e-71 Identities = 644/963 (67%), Gaps = 4/963 (0%) Strand=Plus/Minus Query 99502 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 99561 || || ||| | ||||||||||| |||| ||| ||||| |||||||| || ||||| ||| Sbjct 7677 AGCGGCATCCTCAACTGGAACGACATTCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 7618 Query 99562 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 99621 | | || || | |||| | || || ||||| || |||||| ||||||| |||||| Sbjct 7617 CTGTCGACCAACTTCTGGATTCCCGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 7558 Query 99622 AACCACTTATCCGAAGAAGAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTACA 99681 | | | || | || ||| | || | ||||| || ||||| || | || || Sbjct 7557 GGCGAGCTCAACGCACGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTCGCCACG 7498 Query 99682 CTTGACTCACCCCAAACACGTTTTATTTATAACATTGCAGAGTATGTCAGTGATGCCTCC 99741 || |||||||| || || || || || || ||| | || ||||| | | || | | Sbjct 7497 CTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATTACCGACCCAGCG 7438 Query 99742 GTTCATGCTATTACAGCTATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATTCT 99801 | ||||| | | |||| ||||| | || || |||| || || || ||||| || Sbjct 7437 GCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGC 7378 Query 99802 TATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGA 99861 || || || || || || || || | | | ||||| || | || ||| || | Sbjct 7377 TACGTGCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCCGC 7318 Query 99862 ACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATG 99921 || ||||| || || || || || || ||||| || ||| | |||||||| |||||| Sbjct 7317 ACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTATGACGACTTCATG 7258 Query 99922 AATAACAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAGGGT 99981 | || || | |||| || | || | | | ||||| || ||| | || || Sbjct 7257 CGCGAGAAGACCGCCGAGACCCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAGGC 7198 Query 99982 ATTAATTTCTACAGCGGTTTTGCTTACTTCTACAACCTCGTTCGTCAAAACAAGATGACG 100041 || || ||||| |||||| || |||||||||||| | || || || ||| |||| Sbjct 7197 ATCAACTTCTATTCCGGTTTCGCCTACTTCTACAACATGGTGCGGCAGAACCGCATGAAC 7138 Query 100042 GGGACAGGTAAAATCATTAGCTTCATTAATCGTGATGAATTAGCCCATTCGAAATTTATT 100101 || || || || ||||| |||||||| || || || || | || ||| | || || || Sbjct 7137 GGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCATC 7078 Query 100102 TCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAAT 100161 ||| | || | || || | || || |||||||| || || || | || || | Sbjct 7077 AGCGAGTTGATCCGCGCCATCATCGGCGAGAACCCTGAGCTGCAGACCAACGAGCTGACC 7018 Query 100162 GACTACGTGTACGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAGTGA 100220 | ||||||| || || || ||| || | ||||| || | || |||||| || Sbjct 7017 GCCTACGTGCACCAATCATTCGAACACGCGATCGAGCTGGAG-ACGCAGTGGTCGTCGGA 6959 Query 100221 GGTACTACAAGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATATCG 100280 ||| || | || || || || || || ||||| || ||| | ||| || || || || Sbjct 6958 GGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTACCG 6899 Query 100281 TGCTAATAAAATGTTAGGGATGTTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGAAA 100339 || || || ||| || ||| | || | | | |||| || | ||| || || | Sbjct 6898 CGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACA 6840 Query 100340 ATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTTTT 100399 | ||| | ||||| || || |||||||| ||||| || ||||| || |||||||| | Sbjct 6839 ACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACCGAAACCAAGACCGACTTCT 6780 Query 100400 TCGAAATGCGTAATTCTAGTTACAAGAAAACAAATTTAGACAATGGGTTCGATGACTTAT 100459 |||| ||||| ||| | ||||||||||| || || | ||||| || ||||||||| | | Sbjct 6779 TCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGATGACCTCT 6720 Query 100460 GAG 100462 ||| Sbjct 6719 GAG 6717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432694972238158