Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021781.2
Length=135281
Score E
Sequences producing significant alignments: (Bits) Value
seq10153 284 1e-71
>seq10153
Length=9971
Score = 284 bits (314), Expect = 1e-71
Identities = 644/963 (67%), Gaps = 4/963 (0%)
Strand=Plus/Minus
Query 99502 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 99561
|| || ||| | ||||||||||| |||| ||| ||||| |||||||| || ||||| |||
Sbjct 7677 AGCGGCATCCTCAACTGGAACGACATTCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 7618
Query 99562 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 99621
| | || || | |||| | || || ||||| || |||||| ||||||| ||||||
Sbjct 7617 CTGTCGACCAACTTCTGGATTCCCGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 7558
Query 99622 AACCACTTATCCGAAGAAGAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTACA 99681
| | | || | || ||| | || | ||||| || ||||| || | || ||
Sbjct 7557 GGCGAGCTCAACGCACGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTCGCCACG 7498
Query 99682 CTTGACTCACCCCAAACACGTTTTATTTATAACATTGCAGAGTATGTCAGTGATGCCTCC 99741
|| |||||||| || || || || || || ||| | || ||||| | | || | |
Sbjct 7497 CTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATTACCGACCCAGCG 7438
Query 99742 GTTCATGCTATTACAGCTATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATTCT 99801
| ||||| | | |||| ||||| | || || |||| || || || ||||| ||
Sbjct 7437 GCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGC 7378
Query 99802 TATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGA 99861
|| || || || || || || || | | | ||||| || | || ||| || |
Sbjct 7377 TACGTGCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCCGC 7318
Query 99862 ACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATG 99921
|| ||||| || || || || || || ||||| || ||| | |||||||| ||||||
Sbjct 7317 ACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTATGACGACTTCATG 7258
Query 99922 AATAACAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAGGGT 99981
| || || | |||| || | || | | | ||||| || ||| | || ||
Sbjct 7257 CGCGAGAAGACCGCCGAGACCCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAGGC 7198
Query 99982 ATTAATTTCTACAGCGGTTTTGCTTACTTCTACAACCTCGTTCGTCAAAACAAGATGACG 100041
|| || ||||| |||||| || |||||||||||| | || || || ||| ||||
Sbjct 7197 ATCAACTTCTATTCCGGTTTCGCCTACTTCTACAACATGGTGCGGCAGAACCGCATGAAC 7138
Query 100042 GGGACAGGTAAAATCATTAGCTTCATTAATCGTGATGAATTAGCCCATTCGAAATTTATT 100101
|| || || || ||||| |||||||| || || || || | || ||| | || || ||
Sbjct 7137 GGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCATC 7078
Query 100102 TCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAAT 100161
||| | || | || || | || || |||||||| || || || | || || |
Sbjct 7077 AGCGAGTTGATCCGCGCCATCATCGGCGAGAACCCTGAGCTGCAGACCAACGAGCTGACC 7018
Query 100162 GACTACGTGTACGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAGTGA 100220
| ||||||| || || || ||| || | ||||| || | || |||||| ||
Sbjct 7017 GCCTACGTGCACCAATCATTCGAACACGCGATCGAGCTGGAG-ACGCAGTGGTCGTCGGA 6959
Query 100221 GGTACTACAAGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATATCG 100280
||| || | || || || || || || ||||| || ||| | ||| || || || ||
Sbjct 6958 GGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTACCG 6899
Query 100281 TGCTAATAAAATGTTAGGGATGTTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGAAA 100339
|| || || ||| || ||| | || | | | |||| || | ||| || || |
Sbjct 6898 CGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACA 6840
Query 100340 ATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTTTT 100399
| ||| | ||||| || || |||||||| ||||| || ||||| || |||||||| |
Sbjct 6839 ACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACCGAAACCAAGACCGACTTCT 6780
Query 100400 TCGAAATGCGTAATTCTAGTTACAAGAAAACAAATTTAGACAATGGGTTCGATGACTTAT 100459
|||| ||||| ||| | ||||||||||| || || | ||||| || ||||||||| | |
Sbjct 6779 TCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGATGACCTCT 6720
Query 100460 GAG 100462
|||
Sbjct 6719 GAG 6717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432694972238158
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |