Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq11759 93.3 2e-14 seq11622 87.8 8e-13 >seq11759 Length=158816 Score = 93.3 bits (102), Expect = 2e-14 Identities = 212/315 (67%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 7955 AATTGAAACCAGGTGAAACCAAGTTAGTTGAAACTGGTTTGGCTATTCATCTGGATGATG 8014 ||||||| || ||| |||| ||| ||| |||| ||| |||| ||| || | || ||| Sbjct 86506 AATTGAA-CCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATA 86448 Query 8015 TGAAGTATGCAGCAATGATTCTTCCTCGTTCAGGTCTGGGCCATAAGCATGGTGTAGTGC 8074 || | ||| | | || | || ||||| || |||||||||||||||| | || Sbjct 86447 CTAATTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTAT 86388 Query 8075 TTGGGAACCTTACTGGTCTGATTGATTCAGACTATCAGGGTGAACTTATGGTAAGCCTCT 8134 | || ||| | ||| | ||||||||||| ||||| || ||| | ||||| | | Sbjct 86387 TGGGCAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTT 86328 Query 8135 GGAATCGCTCTACAGAGC-CTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTA 8193 ||||||| | || | | | |||||| | | || ||||| ||| | || ||| || Sbjct 86327 GGAATCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTT 86269 Query 8194 ATCGTGCCTGTAATGCAGCCTGAGTTCGTTGTAGTGGATTCATTTGAGTCTACCAAACGA 8253 | ||||||||| | || | | || | | | || | |||||| | || |||| Sbjct 86268 TTGGTGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGT 86209 Query 8254 GGTGCTGGTGGCTTT 8268 ||||||||||| ||| Sbjct 86208 GGTGCTGGTGGTTTT 86194 >seq11622 Length=276999 Score = 87.8 bits (96), Expect = 8e-13 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 15027 GTAGGAGATTTACATGGTTGCTTTGATGAATTCCAAAAAGAGATGTGGGCTG-TTCAGTT 15085 ||||| ||| |||||||||| | |||| || || || | || | | |||| || Sbjct 125487 GTAGGTGATATACATGGTTGTTATGATTTGTTGATGCAACAGCT-TGAACGGGTTCAATT 125545 Query 15086 TAATGCTGAAACAGACTTAATTATCTCTGTAGGTGATTTAATTGACCGTGGTTCACAGAA 15145 ||| ||||| || || | || ||||||| ||| | |||| |||||| | | | Sbjct 125546 TAACTTTGAAAAGGATCTATTGATTGCTGTAGGGGATATTGTTGATCGTGGTCCTGACAG 125605 Query 15146 TGTGAATTGCTTACGTCTGTTAAATGAACCTTGGTTTAAAGCTGTTCTAGGCAATCATGA 15205 | |||| || || | |||| | || |||||||||||||||||| ||||||||||||| Sbjct 125606 TTTGAAATGTTTGCATCTGCTTGCAGAGCCTTGGTTTAAAGCTGTTTTAGGCAATCATGA 125665 Query 15206 AGTAATG 15212 || |||| Sbjct 125666 AGAAATG 125672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230546479677241