Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_021782.1
Length=72098
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 93.3 2e-14
seq11622 87.8 8e-13
>seq11759
Length=158816
Score = 93.3 bits (102), Expect = 2e-14
Identities = 212/315 (67%), Gaps = 3/315 (1%)
Strand=Plus/Minus
Query 7955 AATTGAAACCAGGTGAAACCAAGTTAGTTGAAACTGGTTTGGCTATTCATCTGGATGATG 8014
||||||| || ||| |||| ||| ||| |||| ||| |||| ||| || | || |||
Sbjct 86506 AATTGAA-CCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATA 86448
Query 8015 TGAAGTATGCAGCAATGATTCTTCCTCGTTCAGGTCTGGGCCATAAGCATGGTGTAGTGC 8074
|| | ||| | | || | || ||||| || |||||||||||||||| | ||
Sbjct 86447 CTAATTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTAT 86388
Query 8075 TTGGGAACCTTACTGGTCTGATTGATTCAGACTATCAGGGTGAACTTATGGTAAGCCTCT 8134
| || ||| | ||| | ||||||||||| ||||| || ||| | ||||| | |
Sbjct 86387 TGGGCAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTT 86328
Query 8135 GGAATCGCTCTACAGAGC-CTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTA 8193
||||||| | || | | | |||||| | | || ||||| ||| | || ||| ||
Sbjct 86327 GGAATCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTT 86269
Query 8194 ATCGTGCCTGTAATGCAGCCTGAGTTCGTTGTAGTGGATTCATTTGAGTCTACCAAACGA 8253
| ||||||||| | || | | || | | | || | |||||| | || ||||
Sbjct 86268 TTGGTGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGT 86209
Query 8254 GGTGCTGGTGGCTTT 8268
||||||||||| |||
Sbjct 86208 GGTGCTGGTGGTTTT 86194
>seq11622
Length=276999
Score = 87.8 bits (96), Expect = 8e-13
Identities = 133/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 15027 GTAGGAGATTTACATGGTTGCTTTGATGAATTCCAAAAAGAGATGTGGGCTG-TTCAGTT 15085
||||| ||| |||||||||| | |||| || || || | || | | |||| ||
Sbjct 125487 GTAGGTGATATACATGGTTGTTATGATTTGTTGATGCAACAGCT-TGAACGGGTTCAATT 125545
Query 15086 TAATGCTGAAACAGACTTAATTATCTCTGTAGGTGATTTAATTGACCGTGGTTCACAGAA 15145
||| ||||| || || | || ||||||| ||| | |||| |||||| | | |
Sbjct 125546 TAACTTTGAAAAGGATCTATTGATTGCTGTAGGGGATATTGTTGATCGTGGTCCTGACAG 125605
Query 15146 TGTGAATTGCTTACGTCTGTTAAATGAACCTTGGTTTAAAGCTGTTCTAGGCAATCATGA 15205
| |||| || || | |||| | || |||||||||||||||||| |||||||||||||
Sbjct 125606 TTTGAAATGTTTGCATCTGCTTGCAGAGCCTTGGTTTAAAGCTGTTTTAGGCAATCATGA 125665
Query 15206 AGTAATG 15212
|| ||||
Sbjct 125666 AGAAATG 125672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 230546479677241
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |