Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021798.1 Length=145343 Score E Sequences producing significant alignments: (Bits) Value seq8391 82.4 7e-11 seq8237 82.4 7e-11 >seq8391 Length=13669 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/79 (84%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 90815 GTAGCTCAGTTGGTAGAGCAGTGGTCTCCAAAACCAAAGGTCGTAGGTTCGAGTCCTACC 90874 ||||||||| |||||||||| ||||||||||||| | |||||| ||||||||||| || Sbjct 5763 GTAGCTCAGCTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGTGGGTTCGAGTCCCCCC 5704 Query 90875 TCTCGTG---CTATCTGTA 90890 ||| || ||||||||| Sbjct 5703 ACTCCTGCCACTATCTGTA 5685 >seq8237 Length=506431 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 89899 TTTATGGCCTTGTAGCTCAGTTGGTTAGAGCAGCTCACTCATAATGAGAAGGTCTCAGGT 89958 |||||||| |||||||||||||||||||||| | ||||||||||| | |||| ||||| Sbjct 303403 TTTATGGCTATGTAGCTCAGTTGGTTAGAGCACCGCACTCATAATGCGGGGGTCACAGGT 303344 Query 89959 TCGAGTCC 89966 || ||||| Sbjct 303343 TCAAGTCC 303336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 464882075284920