Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq7304 123 7e-24 >seq7304 Length=19908 Score = 123 bits (136), Expect = 7e-24 Identities = 538/833 (65%), Gaps = 26/833 (3%) Strand=Plus/Minus Query 816 TGTTGCCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGT 875 ||||||| ||||| || || ||||||||| | ||| | ||| | | || ||||| | Sbjct 14382 TGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTT 14323 Query 876 GGCAGCTCTTTGTGATCTGCT-GCGCGTTTGGCTGGGTCAATAAA--GGCTCCCGGCTGC 932 ||||| |||| || |||| | | || |||||||| |||| || | || | Sbjct 14322 GGCAGAAATTTGGAAT-TGCTTGTACTTTCGGCTGGGTTCGTAAAAAGGATG--GGTACC 14266 Query 933 GCCGCTTCCGTGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTG 992 | || ||| | ||| ||| ||||| || ||||| || || || || ||||| | | Sbjct 14265 GTCGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAG 14206 Query 993 CCGGTGTCGCCCTGTATTGTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCG 1052 | ||||| || || || ||||| |||| || | ||| || || || | | Sbjct 14205 CTGGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTG 14146 Query 1053 GTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCTCGACTGATGTGTAAAC 1112 |||| || || || ||||| || |||||||| ||| || |||||| | ||| | Sbjct 14145 GTGCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGC 14086 Query 1113 GCACACCCA----TGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT-CAAACATGAA 1167 | |||| || ||| || ||| || || || | || || || | |||| Sbjct 14085 GTTCACCTGATTTTGTTGA-GGCAGCT---GGAATACAGATAAATGCTGGCAGTCTTGAA 14030 Query 1168 CCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATC 1227 || || |||||| | |||||| | | | || | || |||||| || Sbjct 14029 ATA-CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTC 13971 Query 1228 ACCCCACTGTGCGGTGGTGGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCAC 1287 ||| || ||||| | | |||||||||||||||||| || |||| | || ||| Sbjct 13970 ACCGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACAC 13911 Query 1288 AATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGG 1347 |||| || || ||||||||||| ||||||||| |||||| | || || || | || Sbjct 13910 TATGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGG 13851 Query 1348 GTACAACATTGAGGGGCCGTGCTACGACAAACG-GCGGGAAGTCATCGAGATGCTCAACG 1406 | ||| ||||| || || || ||||| || | | ||| || ||| | | Sbjct 13850 TTTCAATATTGATGGTCCTTGTCACGACTTGCGTTTACGTATTCA-AGACATGTTGCTTG 13792 Query 1407 GCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACT 1466 | | ||||| | ||||| ||||| || |||| ||| ||||||| ||||| || | Sbjct 13791 GTACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGT 13732 Query 1467 GGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCG 1526 |||| || || |||| | | || |||||||||||| | || || |||||| ||| Sbjct 13731 GGACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGGCG 13672 Query 1527 AATTTTTGTTAATTCAGCAGCAGCGT---GCGAAAAATAACGCCGGTCTGGCAAACGTC- 1582 | || || | ||| ||||| ||| || | |||||| | || | |||| | Sbjct 13671 A--TTACCTTGAGTCA-CAGCAACGTAAGGCAATAAATAATCCATCTC-GTCAAAATACA 13616 Query 1583 TTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAA 1635 || || || || || | || || ||||| || |||||| | ||| ||||| Sbjct 13615 TTCAAGACTAAGCATTTAAACATTTGGGTTTCTGCGCGTGAGCAGTACTTCAA 13563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132574688008246