Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_022052.1 Length=76050 Score E Sequences producing significant alignments: (Bits) Value seq15007 84.2 1e-11 seq8424 82.4 4e-11 >seq15007 Length=612 Score = 84.2 bits (92), Expect = 1e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 64716 CGCGTCGTTAGCTCAGTTGGTAGAGCAGCCGACTCTTAATCGGCGGGTCGGGGGTTCAAG 64775 || |||||||||||||||||||||||||| |||| |||||| | ||||| ||||| || Sbjct 248 CGGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAGGTTCGAG 307 Query 64776 TCCCTCACGGC 64786 |||| |||||| Sbjct 308 TCCCGCACGGC 318 >seq8424 Length=263062 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 63474 TGTAGCGCAGCTTGGTAGCGCGCCTGATTTGGATTCAGGGGGTCGGAGGTTCAAATCCTT 63533 ||||||||||| ||||||||| |||||||||| ||||||||||| |||||| |||||| Sbjct 49880 TGTAGCGCAGCCTGGTAGCGCACCTGATTTGGGATCAGGGGGTCGCAGGTTCGAATCCTG 49821 Query 63534 CCA 63536 ||| Sbjct 49820 CCA 49818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243190558663689