Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_022060.1 Length=54314 Score E Sequences producing significant alignments: (Bits) Value seq12569 253 7e-63 seq6089 219 1e-52 >seq12569 Length=80069 Score = 253 bits (280), Expect = 7e-63 Identities = 380/539 (71%), Gaps = 18/539 (3%) Strand=Plus/Minus Query 41001 GTGGATCTGATTGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 41060 |||| ||||| ||||| || |||||||| | || |||||||| |||||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 41061 AACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACA 41120 ||| ||||| ||||||||||||||||| ||||||||| |||||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 41121 CCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 41180 ||| ||||||||||| | |||||||||||||| | |||| |||||| |||||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 41181 ATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGCCGA- 41239 ||| || || | |||||| |||| | | || || | ||||||| | ||| Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459 Query 41240 -----GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACC 41291 |||| ||| |||||| |||||||| |||||||||| | || || | Sbjct 62458 TGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 41292 GTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAG 41351 || ||||| || || || || ||||||||||| || |||||||||||| |||||| Sbjct 62404 CTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAG 62348 Query 41352 TGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAA 41411 ||||| |||| | ||||| | ||| |||||| | | |||||||||| ||| Sbjct 62347 TGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAG 62288 Query 41412 CCGCAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCCAAGGACGAA 41471 |||| | ||| ||| || || ||||||||| || || | || |||||| Sbjct 62287 CCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGC 62228 Query 41472 TACACCCGTGCCCGATGGCAGGTGGACGCGCACGCGTTCTGGCGCTCGAGCGGCAACCG 41530 |||| ||| || || |||||| | ||||||||| || |||||| |||| |||| Sbjct 62227 TACAGCCGGGCGCGCTGGCAGCTCGACGCGCACCACTTGATGCGCTCCTCCGGCGACCG 62169 Score = 152 bits (168), Expect = 2e-32 Identities = 436/655 (67%), Gaps = 19/655 (3%) Strand=Plus/Minus Query 39615 CACCAGCGTGACCTGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 39674 || ||||| | | |||| ||||||||||| || ||| || | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013 Query 39675 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG-ATTGT-CGCTAGCCAAGC 39732 ||||| |||| || | ||| | ||| ||||||| | ||| || | ||| || | | Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATGCGCGAG---ATC 63956 Query 39733 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 39792 ||| || | || |||||||| || ||||| || |||||| |||||| | | Sbjct 63955 TC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGG 63898 Query 39793 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGTGGTG 39852 ||||| ||||| ||| | ||||||| |||| || | || || | | | | Sbjct 63897 ACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATC 63838 Query 39853 ACGGAA---TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACAC 39909 ||| |||| || |||||||| |||| || || ||||| ||| | ||||| | | Sbjct 63837 CCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-C 63779 Query 39910 TGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGGGTCCAAG 39965 |||| | ||| || || || || ||||||||||| |||| | ||| ||| |||||| Sbjct 63778 TGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAG 63719 Query 39966 ACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCC 40025 |||| | |||| | ||||||||| ||| |||| || | |||||| |||||| Sbjct 63718 ACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCC 63659 Query 40026 ACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATG 40085 |||||||| || ||| | || |||||| | ||| ||| | || || |||||| Sbjct 63658 ACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATG 63599 Query 40086 GACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGC-ACCAAGGCGAATAACCT 40144 || ||| ||| || ||| |||| ||| |||||| | || | ||| ||| Sbjct 63598 GATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGC-CCT 63540 Query 40145 AACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGTT 40204 ||||| |||| || ||||||||||| |||||||| ||| | | ||||| ||| Sbjct 63539 CACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTT 63480 Query 40205 CGTGCA-ATCCCCAGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCC 40258 ||| || || ||| || || || | || | |||||| ||||||||||| Sbjct 63479 CGTCCAGCGGCCGAGC-GATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426 Score = 100 bits (110), Expect = 1e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 41776 AAATGCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 41835 ||| ||| |||||||||||| ||||| ||||| ||||||||||||| | | || Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861 Query 41836 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 41895 | || ||||| |||||||||| ||||||||||| ||| |||||||| | || || Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801 Query 41896 TGAAACTCGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 41955 | || | ||| || |||| | | ||||||||| || | ||||| |||| | || Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741 Query 41956 TCAAG 41960 | ||| Sbjct 61740 TGAAG 61736 >seq6089 Length=13452 Score = 219 bits (242), Expect = 1e-52 Identities = 497/740 (67%), Gaps = 33/740 (4%) Strand=Plus/Minus Query 39569 TGGGCAT-CAAGTCGGCCCCGATGACGTTCACCCGATGCTGCTGCCACACCAGCGTGACC 39627 ||||||| | |||| | || ||||||| || ||||| ||| | |||||| || | Sbjct 4820 TGGGCATGCCGGTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGC 4761 Query 39628 TGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCA 39687 |||| || ||||| |||| || ||||| || ||||||||||| |||||||| |||||| Sbjct 4760 TGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCA 4701 Query 39688 AGACCGTGATGCAGCTGGAGATCGTGCGATTG--TCGCTAGCCAAGCATGGCGGTGGTAA 39745 || | || ||||||||||||||| |||| | | || ||| ||| ||||| | | Sbjct 4700 AGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGCTGGGCGGCCGGCA 4643 Query 39746 AGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCT 39805 |||||||| |||||||| |||| |||||| ||| | |||||| | ||||| Sbjct 4642 G---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCT 4586 Query 39806 AGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTC----------------GGTG 39849 ||| | || | ||| | ||| |||| | ||| || || Sbjct 4585 GGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCC 4526 Query 39850 GTGACGGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 39907 | | || | || | || ||||||||||| ||||||||| || ||| | |||| ||| Sbjct 4525 GAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGAC 4466 Query 39908 ACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGTCTTT-CGGGTCCA 39963 | |||| |||| || || || || || | |||| ||||| || ||| ||| Sbjct 4465 GCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCA 4407 Query 39964 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGG 40023 |||||| || |||| | ||||||||||| | | || || ||||| |||| Sbjct 4406 AGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGG 4347 Query 40024 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGA 40083 |||||||||| |||||| || | |||||| | ||| || | | || | | | | Sbjct 4346 CCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCA 4287 Query 40084 TGGACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGCACCAAGGCGAATAACC 40143 |||| |||| ||| || ||| ||| ||||| ||||| ||||| | | | Sbjct 4286 TGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAAC 4227 Query 40144 TAACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGT 40203 | ||| || | || || || || ||||||||||| ||| | |||| ||||||||| | Sbjct 4226 TGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCAT 4167 Query 40204 TCGTGCAATCCCC-AGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCCGTTG 40262 |||| || || ||| || ||||||| | || | |||||||||||||| | || Sbjct 4166 TCGTCCAGCGGCCGAGC-GATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTG 4108 Query 40263 GATGTGCAGTGGCATGAGGT 40282 || |||| ||||||||||| Sbjct 4107 GACGTGCGCTGGCATGAGGT 4088 Score = 163 bits (180), Expect = 1e-35 Identities = 312/455 (69%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 41007 CTGATTGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 41066 ||||||||||| ||| | || || || ||| || || || |||||||||| || || Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 41067 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 41126 |||||||| |||||||| || ||||||| |||||||||||||| || || || || Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 41127 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 41186 ||||||||| || | ||||||||| | || || || ||||| ||| ||| Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTTG 3198 Query 41187 TTCGG--AAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGC-CGAGGCG 41243 ||| | | | || || ||| | | ||| | |||||||| || || || Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139 Query 41244 ATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 41303 ||| || ||| || ||||||| ||| || |||||| | || | ||||||||| Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079 Query 41304 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 41363 || || || || || || || |||||||||||| | ||||||||||| || ||| Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019 Query 41364 ACCAAGATGGGTGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGAC 41423 | | ||||| |||||| || ||||| | || ||||||| ||| |||| || ||| Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959 Query 41424 AGGTCGAAGGGATACGCCGACACACCCGTCACCAA 41458 || || || || ||||| || |||||||| Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173652140993208