Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_022067.1
Length=109960
Score E
Sequences producing significant alignments: (Bits) Value
seq11347 116 3e-21
seq9968 113 3e-20
seq858 113 3e-20
seq9425 104 2e-17
seq9376 93.3 3e-14
>seq11347
Length=47098
Score = 116 bits (128), Expect = 3e-21
Identities = 206/296 (70%), Gaps = 16/296 (5%)
Strand=Plus/Minus
Query 95868 CGGCGTGGCGCACGCCGGCTTCCTG--CATCTGCCGGTACCGGTCATCCATCTC---CAC 95922
|| ||| |||||||||| || || |||| |||| || ||||| |||||||| |||
Sbjct 24862 CGACGTTGCGCACGCCGA--TCTTGGACATCCGCCGATAGCGGTCCTCCATCTCGCGCAC 24805
Query 95923 GGTGAGCCACCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAG 95982
|| ||| ||||| | |||| | || |||||||||||||| || ||
Sbjct 24804 CGT---CCATTTCAGCGCGACGATGGCCTTCTTCGGATCGGTGACCACCGGGGCCAGCAG 24748
Query 95983 GTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGCTT 96042
||| ||||| |||| || | || |||| |||||| |||||||||||||||| |
Sbjct 24747 GTGCGGGATGCCGTCATAGACCGACAGCTCCAGCATCTTGGGGTCGATCATGATGAACCG 24688
Query 96043 GACCCGATCAGGATTGGCT---CGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCT 96099
| | | | || ||| |||||||| || || | | ||| | ||||| | |
Sbjct 24687 GCACTGGTGCGG---GGCCAGGCGGTAGAGGATCGACAGGATCATGGCGTTGACGCCGAC 24631
Query 96100 GGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGT 96155
||||||||||| ||||||| ||| || | || ||||||||||| ||||||||||
Sbjct 24630 CGACTTGCCCGAGCCGGTGGTGCCGGCGATCAAGAGGTGGGGCATCTTGGCCAGGT 24575
Score = 96.9 bits (106), Expect = 2e-15
Identities = 128/177 (72%), Gaps = 3/177 (2%)
Strand=Plus/Minus
Query 95677 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95736
||||| ||||| ||| |||| || || || ||||||||||| || |||| || ||
Sbjct 25164 GTTGGCCTTGATGGTGCCGGTGATGACGTCGACCGAGGGCCGCTGGGTGGCCATGATCAG 25105
Query 95737 ATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 95796
|| |||||||| ||||| ||| ||||||| | ||| | | | |||||| ||
Sbjct 25104 GTGGATGCCGGCGGCGCGGGCCATCTGGGCCAGGCGCTGCACGGCGCCCTCGATGTC--- 25048
Query 95797 CTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAGGG 95853
|||| | || ||||||| ||||| |||| |||||||| || ||||| | |||||
Sbjct 25047 CTTGCCGGCGACCATCATCAGGTCGGCCACCTCGTCGATGACCACCACCAGATAGGG 24991
>seq9968
Length=31652
Score = 113 bits (124), Expect = 3e-20
Identities = 130/173 (75%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 95677 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95736
||||| ||||| ||||| |||| || |||||| ||| ||||| || ||||||| ||
Sbjct 27731 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTGGCCAGGATCAG 27672
Query 95737 ATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 95796
|| |||||||| ||||| ||||||||||| | ||| | || |||||| || ||
Sbjct 27671 GTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCCTCGA--TC-TT 27615
Query 95797 CTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGT 95849
|||| | | ||||||| ||||| ||||||||||||| || | |||||||
Sbjct 27614 CTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACGATGT 27562
>seq858
Length=60328
Score = 113 bits (124), Expect = 3e-20
Identities = 134/179 (75%), Gaps = 7/179 (4%)
Strand=Plus/Minus
Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730
||||| ||| | ||||| | ||| |||| || || || ||||| ||||| ||||| ||
Sbjct 50397 CGGCAGGTTCGCCTTGATGACGCCGGTGATGACGTCGACCGAGGGACGCTGGGTCGCGAG 50338
Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95790
|| | || |||||||| || ||||||||||| || | || || | ||||||
Sbjct 50337 GATCAAGTGGATGCCGGCAGCACGCGCCTTCTGCGCCAGACGCTGGATCAGGAACTCGAC 50278
Query 95791 TTCTTTCTTGTAGCCGCC--CATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGAT 95847
||| |||| ||||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct 50277 TTC---CTTG--CCCGCCGTCATCATGAGGTCGGCCAGCTCGTCGACCACCACCACGAT 50224
>seq9425
Length=520298
Score = 104 bits (114), Expect = 2e-17
Identities = 133/183 (73%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730
||| | ||||| ||||| ||| |||| || || || || || |||||||||||||
Sbjct 178367 CGGGAAGTTGGCCTTGATCGTGCCGGTGATGACGTCGACCGACGGGCGCTGCGTCGCCAT 178426
Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95790
|| || || |||||||| ||||||||| ||||||||| ||| | | | ||||||
Sbjct 178427 GATGACGTGGATGCCGGCCGCGCGCGCCATCTGGGCGAGGCGCTGGACGGCGCCCTCGAT 178486
Query 95791 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTA 95850
|| |||| | | ||||||| ||||| |||| |||||||| | || ||||||||
Sbjct 178487 ATC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 178543
Query 95851 GGG 95853
||
Sbjct 178544 AGG 178546
>seq9376
Length=532321
Score = 93.3 bits (102), Expect = 3e-14
Identities = 182/266 (68%), Gaps = 10/266 (4%)
Strand=Plus/Plus
Query 95893 CATCTGCCGGTACCGGTCATCCATCTC---CACGGTGAGCCACCGCAGCGTCTTAACCGC 95949
||||| || || ||||| ||||| || ||||| ||| || || | | |||||
Sbjct 135370 CATCTTGCGATAACGGTCTTCCATTTCGCGCACGGC---CCATTTCAACGCCATGACCGC 135426
Query 95950 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 96009
|| | || ||||| || |||||| ||| || || || || |||| || | ||
Sbjct 135427 CTTTTTCGGATCGGTAACAACCGGCGTCAACAGATGCGGAATGCCGTCATAAACCGACAG 135486
Query 96010 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 96069
||| | ||| ||||| |||| |||||| || | || || || ||||||||
Sbjct 135487 TTCGAGCATTTTCGGATCGACCATGATCAGGCGGCATTCTTCCGGCTTCAGACGGTAGAG 135546
Query 96070 CATGGAAACCAGCATCGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTGGCGCCAGCC 96127
|| || | | ||| | ||||||| || | ||||||||||| ||||||| ||| ||
Sbjct 135547 CAGCGACAGGATCATGGTGTTGATGGCAACC--GACTTGCCCGAACCGGTGGTGCCGGCG 135604
Query 96128 ACCAGCAGGTGGGGCATTTTGGCCAG 96153
|||||||| || ||||| || |||||
Sbjct 135605 ACCAGCAGATGCGGCATCTTCGCCAG 135630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351682643286779
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |