Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq11347 116 3e-21 seq9968 113 3e-20 seq858 113 3e-20 seq9425 104 2e-17 seq9376 93.3 3e-14 >seq11347 Length=47098 Score = 116 bits (128), Expect = 3e-21 Identities = 206/296 (70%), Gaps = 16/296 (5%) Strand=Plus/Minus Query 95868 CGGCGTGGCGCACGCCGGCTTCCTG--CATCTGCCGGTACCGGTCATCCATCTC---CAC 95922 || ||| |||||||||| || || |||| |||| || ||||| |||||||| ||| Sbjct 24862 CGACGTTGCGCACGCCGA--TCTTGGACATCCGCCGATAGCGGTCCTCCATCTCGCGCAC 24805 Query 95923 GGTGAGCCACCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAG 95982 || ||| ||||| | |||| | || |||||||||||||| || || Sbjct 24804 CGT---CCATTTCAGCGCGACGATGGCCTTCTTCGGATCGGTGACCACCGGGGCCAGCAG 24748 Query 95983 GTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGCTT 96042 ||| ||||| |||| || | || |||| |||||| |||||||||||||||| | Sbjct 24747 GTGCGGGATGCCGTCATAGACCGACAGCTCCAGCATCTTGGGGTCGATCATGATGAACCG 24688 Query 96043 GACCCGATCAGGATTGGCT---CGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCT 96099 | | | | || ||| |||||||| || || | | ||| | ||||| | | Sbjct 24687 GCACTGGTGCGG---GGCCAGGCGGTAGAGGATCGACAGGATCATGGCGTTGACGCCGAC 24631 Query 96100 GGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGT 96155 ||||||||||| ||||||| ||| || | || ||||||||||| |||||||||| Sbjct 24630 CGACTTGCCCGAGCCGGTGGTGCCGGCGATCAAGAGGTGGGGCATCTTGGCCAGGT 24575 Score = 96.9 bits (106), Expect = 2e-15 Identities = 128/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 95677 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95736 ||||| ||||| ||| |||| || || || ||||||||||| || |||| || || Sbjct 25164 GTTGGCCTTGATGGTGCCGGTGATGACGTCGACCGAGGGCCGCTGGGTGGCCATGATCAG 25105 Query 95737 ATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 95796 || |||||||| ||||| ||| ||||||| | ||| | | | |||||| || Sbjct 25104 GTGGATGCCGGCGGCGCGGGCCATCTGGGCCAGGCGCTGCACGGCGCCCTCGATGTC--- 25048 Query 95797 CTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAGGG 95853 |||| | || ||||||| ||||| |||| |||||||| || ||||| | ||||| Sbjct 25047 CTTGCCGGCGACCATCATCAGGTCGGCCACCTCGTCGATGACCACCACCAGATAGGG 24991 >seq9968 Length=31652 Score = 113 bits (124), Expect = 3e-20 Identities = 130/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 95677 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95736 ||||| ||||| ||||| |||| || |||||| ||| ||||| || ||||||| || Sbjct 27731 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTGGCCAGGATCAG 27672 Query 95737 ATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 95796 || |||||||| ||||| ||||||||||| | ||| | || |||||| || || Sbjct 27671 GTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCCTCGA--TC-TT 27615 Query 95797 CTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGT 95849 |||| | | ||||||| ||||| ||||||||||||| || | ||||||| Sbjct 27614 CTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACGATGT 27562 >seq858 Length=60328 Score = 113 bits (124), Expect = 3e-20 Identities = 134/179 (75%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730 ||||| ||| | ||||| | ||| |||| || || || ||||| ||||| ||||| || Sbjct 50397 CGGCAGGTTCGCCTTGATGACGCCGGTGATGACGTCGACCGAGGGACGCTGGGTCGCGAG 50338 Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95790 || | || |||||||| || ||||||||||| || | || || | |||||| Sbjct 50337 GATCAAGTGGATGCCGGCAGCACGCGCCTTCTGCGCCAGACGCTGGATCAGGAACTCGAC 50278 Query 95791 TTCTTTCTTGTAGCCGCC--CATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGAT 95847 ||| |||| ||||| |||||||||||| ||||||||||||||||| |||||||| Sbjct 50277 TTC---CTTG--CCCGCCGTCATCATGAGGTCGGCCAGCTCGTCGACCACCACCACGAT 50224 >seq9425 Length=520298 Score = 104 bits (114), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730 ||| | ||||| ||||| ||| |||| || || || || || ||||||||||||| Sbjct 178367 CGGGAAGTTGGCCTTGATCGTGCCGGTGATGACGTCGACCGACGGGCGCTGCGTCGCCAT 178426 Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95790 || || || |||||||| ||||||||| ||||||||| ||| | | | |||||| Sbjct 178427 GATGACGTGGATGCCGGCCGCGCGCGCCATCTGGGCGAGGCGCTGGACGGCGCCCTCGAT 178486 Query 95791 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTA 95850 || |||| | | ||||||| ||||| |||| |||||||| | || |||||||| Sbjct 178487 ATC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 178543 Query 95851 GGG 95853 || Sbjct 178544 AGG 178546 >seq9376 Length=532321 Score = 93.3 bits (102), Expect = 3e-14 Identities = 182/266 (68%), Gaps = 10/266 (4%) Strand=Plus/Plus Query 95893 CATCTGCCGGTACCGGTCATCCATCTC---CACGGTGAGCCACCGCAGCGTCTTAACCGC 95949 ||||| || || ||||| ||||| || ||||| ||| || || | | ||||| Sbjct 135370 CATCTTGCGATAACGGTCTTCCATTTCGCGCACGGC---CCATTTCAACGCCATGACCGC 135426 Query 95950 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 96009 || | || ||||| || |||||| ||| || || || || |||| || | || Sbjct 135427 CTTTTTCGGATCGGTAACAACCGGCGTCAACAGATGCGGAATGCCGTCATAAACCGACAG 135486 Query 96010 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 96069 ||| | ||| ||||| |||| |||||| || | || || || |||||||| Sbjct 135487 TTCGAGCATTTTCGGATCGACCATGATCAGGCGGCATTCTTCCGGCTTCAGACGGTAGAG 135546 Query 96070 CATGGAAACCAGCATCGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTGGCGCCAGCC 96127 || || | | ||| | ||||||| || | ||||||||||| ||||||| ||| || Sbjct 135547 CAGCGACAGGATCATGGTGTTGATGGCAACC--GACTTGCCCGAACCGGTGGTGCCGGCG 135604 Query 96128 ACCAGCAGGTGGGGCATTTTGGCCAG 96153 |||||||| || ||||| || ||||| Sbjct 135605 ACCAGCAGATGCGGCATCTTCGCCAG 135630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351682643286779