Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_022071.1 Length=76129 Score E Sequences producing significant alignments: (Bits) Value seq7994 93.3 2e-14 seq15007 89.7 3e-13 seq9835 84.2 1e-11 >seq7994 Length=80430 Score = 93.3 bits (102), Expect = 2e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 64837 CCTCGTTAGCTCAGTTGGTAGAGCAGCCGACTCTTAATCGGCGGGTCACAGGTTCAAGTC 64896 ||||| |||||||||||||||||||| ||||| ||||||| |||||| ||||||| |||| Sbjct 67717 CCTCGGTAGCTCAGTTGGTAGAGCAGGCGACTGTTAATCGCCGGGTCGCAGGTTCGAGTC 67658 Query 64897 CTGTACGGGGTACCAC 64912 ||| ||||| |||| Sbjct 67657 CTGCCCGGGGAGCCAC 67642 >seq15007 Length=612 Score = 89.7 bits (98), Expect = 3e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 64828 GGTCTTTTGCCTCGTTAGCTCAGTTGGTAGAGCAGCCGACTCTTAATCGGCGGGTCACAG 64887 ||||||| | ||||||||||||||||||||||||| |||| |||||| | |||| ||| Sbjct 241 GGTCTTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAG 300 Query 64888 GTTCAAGTCCTGTACGGGGTACCA 64911 |||| ||||| | |||| ||||| Sbjct 301 GTTCGAGTCCCGCACGGCCTACCA 324 >seq9835 Length=4128 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 66701 GGTGCCCCCACTAGGGATCGAACCTAGGACCCGAAGATTAAAAGTCTCCTGCTCTACCAA 66760 |||| | |||||||| |||||||||||||||| |||||| |||| |||||||||||| Sbjct 1910 GGTGGGCGCACTAGGGCTCGAACCTAGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAA 1851 Query 66761 CTGAGCTAT 66769 ||||||||| Sbjct 1850 CTGAGCTAT 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243443312266910