Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_022071.1
Length=76129
Score E
Sequences producing significant alignments: (Bits) Value
seq7994 93.3 2e-14
seq15007 89.7 3e-13
seq9835 84.2 1e-11
>seq7994
Length=80430
Score = 93.3 bits (102), Expect = 2e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 64837 CCTCGTTAGCTCAGTTGGTAGAGCAGCCGACTCTTAATCGGCGGGTCACAGGTTCAAGTC 64896
||||| |||||||||||||||||||| ||||| ||||||| |||||| ||||||| ||||
Sbjct 67717 CCTCGGTAGCTCAGTTGGTAGAGCAGGCGACTGTTAATCGCCGGGTCGCAGGTTCGAGTC 67658
Query 64897 CTGTACGGGGTACCAC 64912
||| ||||| ||||
Sbjct 67657 CTGCCCGGGGAGCCAC 67642
>seq15007
Length=612
Score = 89.7 bits (98), Expect = 3e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 64828 GGTCTTTTGCCTCGTTAGCTCAGTTGGTAGAGCAGCCGACTCTTAATCGGCGGGTCACAG 64887
||||||| | ||||||||||||||||||||||||| |||| |||||| | |||| |||
Sbjct 241 GGTCTTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAG 300
Query 64888 GTTCAAGTCCTGTACGGGGTACCA 64911
|||| ||||| | |||| |||||
Sbjct 301 GTTCGAGTCCCGCACGGCCTACCA 324
>seq9835
Length=4128
Score = 84.2 bits (92), Expect = 1e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 66701 GGTGCCCCCACTAGGGATCGAACCTAGGACCCGAAGATTAAAAGTCTCCTGCTCTACCAA 66760
|||| | |||||||| |||||||||||||||| |||||| |||| ||||||||||||
Sbjct 1910 GGTGGGCGCACTAGGGCTCGAACCTAGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAA 1851
Query 66761 CTGAGCTAT 66769
|||||||||
Sbjct 1850 CTGAGCTAT 1842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243443312266910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |