Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_022096.1
Length=258139
Score E
Sequences producing significant alignments: (Bits) Value
seq10908 288 2e-72
seq915 235 9e-57
seq9676 206 4e-48
seq14232 181 2e-40
seq9665 149 1e-30
seq10207 98.7 2e-15
seq8939 98.7 2e-15
seq10856 84.2 4e-11
>seq10908
Length=27074
Score = 288 bits (318), Expect = 2e-72
Identities = 328/437 (75%), Gaps = 14/437 (3%)
Strand=Plus/Minus
Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAG- 35510
||||||| || |||||||||||||| || || || ||||| |||||| | ||||||
Sbjct 16915 GGGTCACGCCGGTCTGGCCCTGGTACTTGCCACCACGATCGCGGTACGACGTCTCGCAGA 16856
Query 35511 -----TCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACAC 35565
|| || | || ||| ||||||||||||||||| ||||| || ||||| | |
Sbjct 16855 TGTCATCGGCGGCCGCCTGGAAGAACAGCATCTGCGCCACGCCTTCATTGGCGTAGATGC 16796
Query 35566 GCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTT 35625
| |||||||| || ||||||||||| ||||| || || || ||||||||||| || |
Sbjct 16795 GTGCCGGCAGCGGCGTGGTGTTGCTGAATTCCAGGGTGACGTGGCCTTCCCACTCCGGCT 16736
Query 35626 CCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACA 35685
||||||| ||||||||||||||||| || |||||||||||||||||||| |||| ||||
Sbjct 16735 CCAGCGGGGTCACGTTGACGATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACA 16676
Query 35686 CCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGT 35745
|||| ||| || |||||| ||||||||||| || || ||||| |||| ||||||||||
Sbjct 16675 CCACCAGGGTGTCGCGCGGGATGCGGAAGTACTCCACGGTGCGCGCCAACGCGAAGCTGT 16616
Query 35746 TCGGCGGAATCAGGATGCTGTCAGCCTTAACCGGCTGCAGGCACTTG---GGATCGAAGT 35802
| ||||| || ||||| ||| | || | || | | || ||||||||||
Sbjct 16615 TGGGCGGGAT---GATGCATTCATCGCCGACGATATCCACGAAGCTGCCCGGATCGAAGT 16559
Query 35803 TCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA- 35861
||| ||||| || | | ||||||||||||||| || | |||| || ||||
Sbjct 16558 GCTTGGGATCGACGATGGTCGAGTTGATGTTGGTGAACACCTTGAACTC-GCGCGAGCAG 16500
Query 35862 CGCACGTCATAACCATA 35878
|||||||| || || ||
Sbjct 16499 CGCACGTCGTAGCCGTA 16483
>seq915
Length=843
Score = 235 bits (260), Expect = 9e-57
Identities = 330/456 (72%), Gaps = 18/456 (4%)
Strand=Plus/Minus
Query 35453 GGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTC 35512
|||||| || ||| |||||||| || ||||||||||||||||| ||| | || ||| |
Sbjct 654 GGTCACGCCATGCTGCCCCTGGTACTTGCCGCCGCGATCCTTGTAGGAGGTCTCACAGAC 595
Query 35513 CTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGG 35572
||| || |||||||| ||||||| ||| || |||||| ||||| | |||||
Sbjct 594 CTCATCGCTCTCGAAGAACAGCACCTGTGCGCAACCTTCACCGGCGTAGATCTTGGCCGG 535
Query 35573 CAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGG 35632
|| || |||||| ||||||||| ||||| | |||||||| || ||||| | ||
Sbjct 534 CAACGGCGTGGTGTTGGAGAACTCCAGGGTCACGTAGCCTTCCCATTCCGGTTCGAAGGG 475
Query 35633 CGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAG 35692
|| |||||||||||||| || ||||| ||||||||| ||| |||| || | ||
Sbjct 474 AGTGACGTTGACGATGATGCCGCAGCGTGCGTAGGTGGACTTGCCCAGGCAGATGGTCAG 415
Query 35693 GACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGG 35752
||| ||||||| ||||||||||||||||| ||||| ||||| |||||| ||| |||||
Sbjct 414 GACACTGCGCGGGATGCGGAAGTATTCGACGGTGCGGGCCAGGGCGAAGGAGTTGGGCGG 355
Query 35753 AATCAGGATGCTGTCA--GCCTT---AACCGGCTGCAGGCACTTGGGATCGAAGTTCTTC 35807
|| ||||| | || ||| | || | | | ||| | || ||||||||||||
Sbjct 354 GAT---GATGCAGACATCGCCCTTGAAATCCAC-GAAGG-ATTTCTCATCGAAGTTCTTG 300
Query 35808 GGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCG--GCAGCACGC- 35864
||||| || | | | |||||||||||||||| | | || | | ||||| |||
Sbjct 299 GGATCGACGATGGTGGAATTGATGTTGGTGAAGATCTTGAATTCGTTGGCGCAGC-CGCG 241
Query 35865 ----ACGTCATAACCATACGACGAGTTGCCGTACGA 35896
| || || ||||| |||||| ||||||| ||
Sbjct 240 GGGGATATCTTAGCCATAGGACGAGGTGCCGTAGGA 205
>seq9676
Length=343241
Score = 206 bits (228), Expect = 4e-48
Identities = 276/383 (72%), Gaps = 12/383 (3%)
Strand=Plus/Plus
Query 35454 GTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCC 35513
||||| ||| || || ||||||||||| || || || ||||| ||| |||||||| |
Sbjct 101865 GTCACGCCCACTTGACCTTGGTATTTACCACCACGGTCTTTGTATGAGGTTTCGCAGACA 101924
Query 35514 TCGTCACTCTCG------AAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGC 35567
|| ||| ||| || ||||| | ||||| |||||| || || || |
Sbjct 101925 TCATCAGCATCGGCTTCAAAGAACAGTACTTGCGCGCAACCTTCATTGGCATAAATCTTT 101984
Query 35568 GCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCC 35627
|| || || ||| ||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct 101985 GCAGGTAGCGGGGTGGTGTTGCTGAATTCCAGTGTGACATAACCTTCCCACTCAGGTTCA 102044
Query 35628 AGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACC 35687
| |||||| ||||| || ||||| || || ||||| |||||| |||||||| || ||
Sbjct 102045 AACGGCGTGACGTTCACAATGATGCCGCAACGCGCATAGGTGGATTTACCCAAGCATACA 102104
Query 35688 ACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTC 35747
|| || |||||||| || ||||||||||| || |||||||||| |||||| |||
Sbjct 102105 GTCAGCACATTGCGCGGGATACGGAAGTATTCTACGGTGCGTGCCAAAGCGAATGAGTTG 102164
Query 35748 GGCGGAATCAGGATGCTG---TCAGCCTTAACCGGCTGCAGGCACTTGGGATCGAAGTTC 35804
|| ||||| ||||| | ||||| || ||| | | | || || ||||| ||
Sbjct 102165 GGTGGAAT---GATGCAGTAATCAGCATTCACCTCCACAAATGAGTTAGGGTCGAAATTT 102221
Query 35805 TTCGGATCAACCACTGCGCTGTT 35827
|||||||| || | | ||||||
Sbjct 102222 TTCGGATCGACAATGGTGCTGTT 102244
>seq14232
Length=72504
Score = 181 bits (200), Expect = 2e-40
Identities = 218/294 (74%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 35592 AACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGATA 35651
|| ||||| |||||||| |||||||| | || ||||||||||| ||||| || |||||
Sbjct 58503 AATTCCAGCGTCACATGGCCTTCCCAGCCCGGCTCCAGCGGCGTGACGTTCACAATGATG 58562
Query 35652 CCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATGCGG 35711
|| ||||| || |||||| || || | || | ||| || |||| |||||| | ||||
Sbjct 58563 CCGCAGCGGGCATAGGTGGATTTGCCAAGGCAGATCACCAGCACGTCGCGCGGCACGCGG 58622
Query 35712 AAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCTGTCAGCC 35771
|| |||||||||||||| || || ||||||||||| |||||||| | | | ||| | |
Sbjct 58623 AAATATTCGACCGTGCGGGCAAGGGCGAAGCTGTTGGGCGGAATGATGCAGACGTCGGTC 58682
Query 35772 TTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTGCGCTGTTGAT 35830
|| | | | | | || |||| | || | ||| ||||| ||||| ||||||| ||
Sbjct 58683 TT-GCGGTCGACAAAGCTGTTGGCGGCAAAATCCTTGGGATCGACCACGGCGCTGTCGAC 58741
Query 35831 GTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATAACCATACGACGA 35884
|||||||||| | |||| ||||| | ||| ||||||| ||||| || ||
Sbjct 58742 ATTGGTGAAGATCTTGAACTCGTCGGCGACGCGCGCGTCATAGCCATAGGAGGA 58795
>seq9665
Length=136677
Score = 149 bits (164), Expect = 1e-30
Identities = 207/290 (71%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 35442 GCTTTCGGACGGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAG 35501
||||| || ||| || || ||| || ||||||||||| || ||||| || || |||
Sbjct 124442 GCTTTAGGTAAGGTTACCCCAACCTGACCTTGGTATTTACCACCACGATCTTTATAAGAG 124501
Query 35502 ATTTCGCAGTCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTAC 35561
|||| || | || ||| || ||||||||||| || || |||||||| || ||
Sbjct 124502 GTTTCACAAACTTCATCAGATTCAAAAAACAGCATTTGAGCAACACCTTCACCGGCATAA 124561
Query 35562 ACACGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCA 35621
| |||||| || | || || || || ||||| | ||||||||||||||||| |||
Sbjct 124562 ATACGCGCAGGTAAATTCGTCGTATTTGAAAACTCTAATGTCACATGACCTTCCCATTCA 124621
Query 35622 GGTTCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAA 35681
||||| || ||||| || || || |||||||| || || || || || ||||| |
Sbjct 124622 GGTTCAAGTGGCGTTACATTTACAATGATACCGCAACGTGCATAAGTCGATTTACCTAGG 124681
Query 35682 CACACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGC 35731
|| | | | || || || ||||| ||||| ||||| || ||||||||
Sbjct 124682 CAGATCGTCAAAACATTACGTGGAATACGGAAATATTCAACAGTGCGTGC 124731
>seq10207
Length=705
Score = 98.7 bits (108), Expect = 2e-15
Identities = 64/69 (93%), Gaps = 1/69 (1%)
Strand=Plus/Minus
Query 120244 TGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATGCCGGCACCA 120303
|||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||
Sbjct 704 TGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGATTCCTGGTGCCGGCACCA 645
Query 120304 -TATTCTCT 120311
||||| ||
Sbjct 644 TTATTCGCT 636
>seq8939
Length=223461
Score = 98.7 bits (108), Expect = 2e-15
Identities = 73/83 (88%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 120226 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCG- 120284
||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 46256 TTGCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCACAGTTCGA 46315
Query 120285 ATCCCTGATGCCGGCACCATATT 120307
|||| || |||||||||||| ||
Sbjct 46316 ATCCGTG-TGCCGGCACCATTTT 46337
Score = 95.1 bits (104), Expect = 2e-14
Identities = 71/81 (88%), Gaps = 2/81 (2%)
Strand=Plus/Minus
Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA-T 120286
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 588 GCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCACAGTTCGAAT 529
Query 120287 CCCTGATGCCGGCACCATATT 120307
|| || |||||||||||| ||
Sbjct 528 CCGTG-TGCCGGCACCATCTT 509
>seq10856
Length=52747
Score = 84.2 bits (92), Expect = 4e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287
|||||| ||||||||||||||||||| | | |||||| | | ||||| |||||||||||
Sbjct 6914 GCCGGTTTAGCTCAGCTGGTAGAGCAGCGGTTTTGTAAACCGAAGGTCACGGGTTCGATC 6973
Query 120288 CCTGATGCCGGCACCA 120303
|||| |||||||||
Sbjct 6974 CCTGTAACCGGCACCA 6989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 825761331486360
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