Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq10908 288 2e-72 seq915 235 9e-57 seq9676 206 4e-48 seq14232 181 2e-40 seq9665 149 1e-30 seq10207 98.7 2e-15 seq8939 98.7 2e-15 seq10856 84.2 4e-11 >seq10908 Length=27074 Score = 288 bits (318), Expect = 2e-72 Identities = 328/437 (75%), Gaps = 14/437 (3%) Strand=Plus/Minus Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAG- 35510 ||||||| || |||||||||||||| || || || ||||| |||||| | |||||| Sbjct 16915 GGGTCACGCCGGTCTGGCCCTGGTACTTGCCACCACGATCGCGGTACGACGTCTCGCAGA 16856 Query 35511 -----TCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACAC 35565 || || | || ||| ||||||||||||||||| ||||| || ||||| | | Sbjct 16855 TGTCATCGGCGGCCGCCTGGAAGAACAGCATCTGCGCCACGCCTTCATTGGCGTAGATGC 16796 Query 35566 GCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTT 35625 | |||||||| || ||||||||||| ||||| || || || ||||||||||| || | Sbjct 16795 GTGCCGGCAGCGGCGTGGTGTTGCTGAATTCCAGGGTGACGTGGCCTTCCCACTCCGGCT 16736 Query 35626 CCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACA 35685 ||||||| ||||||||||||||||| || |||||||||||||||||||| |||| |||| Sbjct 16735 CCAGCGGGGTCACGTTGACGATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACA 16676 Query 35686 CCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGT 35745 |||| ||| || |||||| ||||||||||| || || ||||| |||| |||||||||| Sbjct 16675 CCACCAGGGTGTCGCGCGGGATGCGGAAGTACTCCACGGTGCGCGCCAACGCGAAGCTGT 16616 Query 35746 TCGGCGGAATCAGGATGCTGTCAGCCTTAACCGGCTGCAGGCACTTG---GGATCGAAGT 35802 | ||||| || ||||| ||| | || | || | | || |||||||||| Sbjct 16615 TGGGCGGGAT---GATGCATTCATCGCCGACGATATCCACGAAGCTGCCCGGATCGAAGT 16559 Query 35803 TCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA- 35861 ||| ||||| || | | ||||||||||||||| || | |||| || |||| Sbjct 16558 GCTTGGGATCGACGATGGTCGAGTTGATGTTGGTGAACACCTTGAACTC-GCGCGAGCAG 16500 Query 35862 CGCACGTCATAACCATA 35878 |||||||| || || || Sbjct 16499 CGCACGTCGTAGCCGTA 16483 >seq915 Length=843 Score = 235 bits (260), Expect = 9e-57 Identities = 330/456 (72%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 35453 GGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTC 35512 |||||| || ||| |||||||| || ||||||||||||||||| ||| | || ||| | Sbjct 654 GGTCACGCCATGCTGCCCCTGGTACTTGCCGCCGCGATCCTTGTAGGAGGTCTCACAGAC 595 Query 35513 CTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGG 35572 ||| || |||||||| ||||||| ||| || |||||| ||||| | ||||| Sbjct 594 CTCATCGCTCTCGAAGAACAGCACCTGTGCGCAACCTTCACCGGCGTAGATCTTGGCCGG 535 Query 35573 CAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGG 35632 || || |||||| ||||||||| ||||| | |||||||| || ||||| | || Sbjct 534 CAACGGCGTGGTGTTGGAGAACTCCAGGGTCACGTAGCCTTCCCATTCCGGTTCGAAGGG 475 Query 35633 CGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAG 35692 || |||||||||||||| || ||||| ||||||||| ||| |||| || | || Sbjct 474 AGTGACGTTGACGATGATGCCGCAGCGTGCGTAGGTGGACTTGCCCAGGCAGATGGTCAG 415 Query 35693 GACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGG 35752 ||| ||||||| ||||||||||||||||| ||||| ||||| |||||| ||| ||||| Sbjct 414 GACACTGCGCGGGATGCGGAAGTATTCGACGGTGCGGGCCAGGGCGAAGGAGTTGGGCGG 355 Query 35753 AATCAGGATGCTGTCA--GCCTT---AACCGGCTGCAGGCACTTGGGATCGAAGTTCTTC 35807 || ||||| | || ||| | || | | | ||| | || |||||||||||| Sbjct 354 GAT---GATGCAGACATCGCCCTTGAAATCCAC-GAAGG-ATTTCTCATCGAAGTTCTTG 300 Query 35808 GGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCG--GCAGCACGC- 35864 ||||| || | | | |||||||||||||||| | | || | | ||||| ||| Sbjct 299 GGATCGACGATGGTGGAATTGATGTTGGTGAAGATCTTGAATTCGTTGGCGCAGC-CGCG 241 Query 35865 ----ACGTCATAACCATACGACGAGTTGCCGTACGA 35896 | || || ||||| |||||| ||||||| || Sbjct 240 GGGGATATCTTAGCCATAGGACGAGGTGCCGTAGGA 205 >seq9676 Length=343241 Score = 206 bits (228), Expect = 4e-48 Identities = 276/383 (72%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 35454 GTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCC 35513 ||||| ||| || || ||||||||||| || || || ||||| ||| |||||||| | Sbjct 101865 GTCACGCCCACTTGACCTTGGTATTTACCACCACGGTCTTTGTATGAGGTTTCGCAGACA 101924 Query 35514 TCGTCACTCTCG------AAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGC 35567 || ||| ||| || ||||| | ||||| |||||| || || || | Sbjct 101925 TCATCAGCATCGGCTTCAAAGAACAGTACTTGCGCGCAACCTTCATTGGCATAAATCTTT 101984 Query 35568 GCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCC 35627 || || || ||| ||||||||||| ||||| || |||| |||||||||||||||||| Sbjct 101985 GCAGGTAGCGGGGTGGTGTTGCTGAATTCCAGTGTGACATAACCTTCCCACTCAGGTTCA 102044 Query 35628 AGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACC 35687 | |||||| ||||| || ||||| || || ||||| |||||| |||||||| || || Sbjct 102045 AACGGCGTGACGTTCACAATGATGCCGCAACGCGCATAGGTGGATTTACCCAAGCATACA 102104 Query 35688 ACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTC 35747 || || |||||||| || ||||||||||| || |||||||||| |||||| ||| Sbjct 102105 GTCAGCACATTGCGCGGGATACGGAAGTATTCTACGGTGCGTGCCAAAGCGAATGAGTTG 102164 Query 35748 GGCGGAATCAGGATGCTG---TCAGCCTTAACCGGCTGCAGGCACTTGGGATCGAAGTTC 35804 || ||||| ||||| | ||||| || ||| | | | || || ||||| || Sbjct 102165 GGTGGAAT---GATGCAGTAATCAGCATTCACCTCCACAAATGAGTTAGGGTCGAAATTT 102221 Query 35805 TTCGGATCAACCACTGCGCTGTT 35827 |||||||| || | | |||||| Sbjct 102222 TTCGGATCGACAATGGTGCTGTT 102244 >seq14232 Length=72504 Score = 181 bits (200), Expect = 2e-40 Identities = 218/294 (74%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 35592 AACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGATA 35651 || ||||| |||||||| |||||||| | || ||||||||||| ||||| || ||||| Sbjct 58503 AATTCCAGCGTCACATGGCCTTCCCAGCCCGGCTCCAGCGGCGTGACGTTCACAATGATG 58562 Query 35652 CCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATGCGG 35711 || ||||| || |||||| || || | || | ||| || |||| |||||| | |||| Sbjct 58563 CCGCAGCGGGCATAGGTGGATTTGCCAAGGCAGATCACCAGCACGTCGCGCGGCACGCGG 58622 Query 35712 AAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCTGTCAGCC 35771 || |||||||||||||| || || ||||||||||| |||||||| | | | ||| | | Sbjct 58623 AAATATTCGACCGTGCGGGCAAGGGCGAAGCTGTTGGGCGGAATGATGCAGACGTCGGTC 58682 Query 35772 TTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTGCGCTGTTGAT 35830 || | | | | | || |||| | || | ||| ||||| ||||| ||||||| || Sbjct 58683 TT-GCGGTCGACAAAGCTGTTGGCGGCAAAATCCTTGGGATCGACCACGGCGCTGTCGAC 58741 Query 35831 GTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATAACCATACGACGA 35884 |||||||||| | |||| ||||| | ||| ||||||| ||||| || || Sbjct 58742 ATTGGTGAAGATCTTGAACTCGTCGGCGACGCGCGCGTCATAGCCATAGGAGGA 58795 >seq9665 Length=136677 Score = 149 bits (164), Expect = 1e-30 Identities = 207/290 (71%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 35442 GCTTTCGGACGGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAG 35501 ||||| || ||| || || ||| || ||||||||||| || ||||| || || ||| Sbjct 124442 GCTTTAGGTAAGGTTACCCCAACCTGACCTTGGTATTTACCACCACGATCTTTATAAGAG 124501 Query 35502 ATTTCGCAGTCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTAC 35561 |||| || | || ||| || ||||||||||| || || |||||||| || || Sbjct 124502 GTTTCACAAACTTCATCAGATTCAAAAAACAGCATTTGAGCAACACCTTCACCGGCATAA 124561 Query 35562 ACACGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCA 35621 | |||||| || | || || || || ||||| | ||||||||||||||||| ||| Sbjct 124562 ATACGCGCAGGTAAATTCGTCGTATTTGAAAACTCTAATGTCACATGACCTTCCCATTCA 124621 Query 35622 GGTTCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAA 35681 ||||| || ||||| || || || |||||||| || || || || || ||||| | Sbjct 124622 GGTTCAAGTGGCGTTACATTTACAATGATACCGCAACGTGCATAAGTCGATTTACCTAGG 124681 Query 35682 CACACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGC 35731 || | | | || || || ||||| ||||| ||||| || |||||||| Sbjct 124682 CAGATCGTCAAAACATTACGTGGAATACGGAAATATTCAACAGTGCGTGC 124731 >seq10207 Length=705 Score = 98.7 bits (108), Expect = 2e-15 Identities = 64/69 (93%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 120244 TGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATGCCGGCACCA 120303 |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| Sbjct 704 TGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGATTCCTGGTGCCGGCACCA 645 Query 120304 -TATTCTCT 120311 ||||| || Sbjct 644 TTATTCGCT 636 >seq8939 Length=223461 Score = 98.7 bits (108), Expect = 2e-15 Identities = 73/83 (88%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 120226 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCG- 120284 ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 46256 TTGCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCACAGTTCGA 46315 Query 120285 ATCCCTGATGCCGGCACCATATT 120307 |||| || |||||||||||| || Sbjct 46316 ATCCGTG-TGCCGGCACCATTTT 46337 Score = 95.1 bits (104), Expect = 2e-14 Identities = 71/81 (88%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA-T 120286 ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| | Sbjct 588 GCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCACAGTTCGAAT 529 Query 120287 CCCTGATGCCGGCACCATATT 120307 || || |||||||||||| || Sbjct 528 CCGTG-TGCCGGCACCATCTT 509 >seq10856 Length=52747 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 |||||| ||||||||||||||||||| | | |||||| | | ||||| ||||||||||| Sbjct 6914 GCCGGTTTAGCTCAGCTGGTAGAGCAGCGGTTTTGTAAACCGAAGGTCACGGGTTCGATC 6973 Query 120288 CCTGATGCCGGCACCA 120303 |||| ||||||||| Sbjct 6974 CCTGTAACCGGCACCA 6989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825761331486360