Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq899 152 3e-32
seq9853 140 2e-28
seq12661 132 3e-26
seq504 109 4e-19
seq3764 105 4e-18
seq6889 104 2e-17
seq11633 87.8 1e-12
seq9118 87.8 1e-12
seq9216 82.4 5e-11
>seq899
Length=2520420
Score = 152 bits (168), Expect = 3e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||||||| | |||||||| ||| | ||| ||| ||||| ||||| ||||| ||
Sbjct 2264402 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264461
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| ||||| |||| ||||| || || ||||| |||||||| | ||||||||| | ||
Sbjct 2264462 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264521
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||| ||||| | || || |||||| | || | ||| ||| ||| ||
Sbjct 2264522 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2264581
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | ||| |||||||| ||||| | |||||| || |||||||||||
Sbjct 2264582 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 140 bits (154), Expect = 2e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||| ||||| ||||| || ||| ||||| ||||
Sbjct 2264645 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2264704
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| |||||||| | ||||||||| | || | ||||| |||||
Sbjct 2264705 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 2264764
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | ||| ||| ||| || || | ||| ||||||
Sbjct 2264765 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2264824
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| | |||||| || |||||||||||
Sbjct 2264825 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 140 bits (154), Expect = 2e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||| ||||| ||||| || ||| ||||| ||||
Sbjct 2264873 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2264932
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| |||||||| | ||||||||| | || | ||||| |||||
Sbjct 2264933 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 2264992
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | ||| ||| ||| || || | ||| ||||||
Sbjct 2264993 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2265052
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| | |||||| || |||||||||||
Sbjct 2265053 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 134 bits (148), Expect = 9e-27
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| ||||
Sbjct 2265101 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 2265160
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| |||||||| | ||||||||| | || | ||||| |||||
Sbjct 2265161 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 2265220
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | ||| ||| ||| || || | ||| ||||||
Sbjct 2265221 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 2265280
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| | |||||| || |||||||||||
Sbjct 2265281 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 123 bits (136), Expect = 2e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||| ||||| ||||| || ||| ||||| ||||
Sbjct 2265329 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2265388
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| ||||||| | || |||||| | || | || || || ||
Sbjct 2265389 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCT 2265448
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||| || ||||| || || || | ||| | | ||| || || | || ||||
Sbjct 2265449 TGTATCTTCACCTTGAC--ATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGG 2265506
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || || ||||||||||||||||||||||||||
Sbjct 2265507 TTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
>seq9853
Length=4041771
Score = 140 bits (154), Expect = 2e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | |||| ||| ||||| || || ||||| || || |||| ||||
Sbjct 359798 AGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCC 359857
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
| ||| || || |||| ||||||||| || ||||||||| | || | ||||||| |||
Sbjct 359858 TGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCT 359917
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| |||||| | | || | ||| ||| |||||| |||| || ||||||
Sbjct 359918 TGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 359977
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||| | || ||||| ||||||||||||||
Sbjct 359978 TTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009
>seq12661
Length=3984070
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | |||| ||| ||||| || || ||||| || | || | ||||
Sbjct 2676666 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCC 2676607
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || || || |||||||| | |||||||| | || | |||||||||||
Sbjct 2676606 TCCAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 2676547
Query 34886 TTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||||| |||||| || || | | ||| ||| |||||| |||| ||| ||||
Sbjct 2676546 TGGATTTTGGCTTTGAC--ATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGG 2676489
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||||| |||||||| ||||||||||||||
Sbjct 2676488 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
>seq504
Length=1076656
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|||| || || ||| ||| |||||| |||||||| ||||| || | | | ||
Sbjct 268492 CTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCA 268433
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| ||||||||||| || || |||||||||| ||||||||| | || | || |||||
Sbjct 268432 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 268373
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || | || ||| | || | | || || |||||| |||| || |||
Sbjct 268372 TCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATG 268313
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || |||||||| || || ||||||||
Sbjct 268312 GTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 268278
>seq3764
Length=1885950
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|||| || || |||| ||| |||||| |||||||| ||||| || | | || ||
Sbjct 1780306 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 1780247
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| ||||||||||| || | |||||||||| ||||||||| | || | || |||||
Sbjct 1780246 TCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 1780187
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || || || | |||| | || || |||||| |||| || |||
Sbjct 1780186 TCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATG 1780127
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975
||||| ||| | |||||||| || || ||||||
Sbjct 1780126 GTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094
>seq6889
Length=11136585
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||||||||| || || || || |||| ||||
Sbjct 1033796 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 1033855
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| ||||| ||||| || | |||||||| | || | || ||||| ||
Sbjct 1033856 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1033915
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | | | ||| ||| ||| | || | ||| |||| |
Sbjct 1033916 TGGATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCC 1033975
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || |||||||| || |||||||||||
Sbjct 1033976 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | | |||||||| | ||| ||| ||||| ||||| || || ||
Sbjct 1034009 CCACCCCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1034068
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| ||| ||||| ||||| ||||| ||||| || | |||||||| | ||
Sbjct 1034069 AGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1034128
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || ||||| || | || || || ||| | || | ||| ||| ||| ||
Sbjct 1034129 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACC 1034188
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | ||| |||||||| || || |||||||| || |||||||||||
Sbjct 1034189 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
>seq11633
Length=4562951
Score = 87.8 bits (96), Expect = 1e-12
Identities = 113/154 (73%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || | || ||||| ||||| | || ||||| |||| | |||||||||||
Sbjct 4176158 TCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCT 4176099
Query 34886 TTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
||||| |||||| || || | | ||| ||| |||||| ||| ||| ||||
Sbjct 4176098 CGGATTTTGGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCGACCACAAGGGTAATGG 4176041
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||| | |||||||| ||||||||||||||
Sbjct 4176040 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 4176007
>seq9118
Length=5926152
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/106 (79%), Gaps = 4/106 (4%)
Strand=Plus/Minus
Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931
||||||||||| | ||||| |||||| || || || | ||| ||| |||||| |
Sbjct 1417390 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCGACCT 1417333
Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 1417332 CAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1417287
>seq9216
Length=6899875
Score = 82.4 bits (90), Expect = 5e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|||||| |||||||| ||||| || | | | |||| ||||||||||| || || ||
Sbjct 1291514 CTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAA 1291455
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||||||| ||| ||||| | | | || ||||| || | || || || ||
Sbjct 1291454 GATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 1291395
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| |||| | || || || ||| |||| || |||||||| | || |||||||| |
Sbjct 1291394 TACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGGGTCTTCAT 1291335
Query 34966 AAAGATCTGCATGATAGTGG 34985
|| |||||||| | ||||
Sbjct 1291334 GAAAATCTGCATCTTGGTGG 1291315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325633025091521
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