Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_022749.1
Length=39758
Score E
Sequences producing significant alignments: (Bits) Value
seq7304 156 1e-33
seq7098 100 7e-17
>seq7304
Length=19908
Score = 156 bits (172), Expect = 1e-33
Identities = 544/832 (65%), Gaps = 24/832 (3%)
Strand=Plus/Minus
Query 758 TGTTGCCGCACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGT 817
||||||| ||||| || || ||||||||| | ||| | ||| | | || ||||| |
Sbjct 14382 TGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTT 14323
Query 818 GGCAGCTATTTGTGATCTGCT-GTGCGTTTGGCTGGGTCAATAAAGGCACCCGGTTGCGC 876
||||| ||||| || |||| || | || |||||||| |||| ||| ||
Sbjct 14322 GGCAGAAATTTGGAAT-TGCTTGTACTTTCGGCTGGGTTCGTAAAAAGGATGGGTACCGT 14264
Query 877 CGCTTCCGGGAGGTGTACACCGAAATCCCCCGTAAGAACGGCAAATCAGCAATCTCTGCC 936
|| ||| ||||| || ||||| || ||||| || || || |||||||| | ||
Sbjct 14263 CGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAGCT 14204
Query 937 GGTGTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGT 996
|||||||| || || ||||| |||| || | ||| || || || | |||
Sbjct 14203 GGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTGGT 14144
Query 997 GCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGC 1056
|| || || || ||||| || |||||||| ||| || || ||| | ||| ||
Sbjct 14143 GCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGCGT 14084
Query 1057 ACACCCA----TGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT-CAAACATGAACC 1111
|||| || ||| || ||| || || || | || || || | ||||
Sbjct 14083 TCACCTGATTTTGTTGA-GGCAGCT---GGAATACAGATAAATGCTGGCAGTCTTGAAAT 14028
Query 1112 GTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCAGGTGATGGTTCATCAC 1171
|| || |||||| | |||||| | | | ||| | || |||||| ||||
Sbjct 14027 A-CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTCAC 13969
Query 1172 CCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCACAA 1231
| || ||||| | |||||||||||||||||||| || |||| | || ||| |
Sbjct 13968 CGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACACTA 13909
Query 1232 TGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGT 1291
||| || || ||||||||||| ||||||||| |||||| | || || || | || |
Sbjct 13908 TGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGGTT 13849
Query 1292 ACAACATTGAGGGGCCGTGCTACGACAAACG-GCGGGAAGTCATCGAGATGCTCAACGGC 1350
||| ||||| || || || ||||| || | | ||| || ||| | ||
Sbjct 13848 TCAATATTGATGGTCCTTGTCACGACTTGCGTTTACGTATTCA-AGACATGTTGCTTGGT 13790
Query 1351 TCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGG 1410
| ||||| | ||||| ||||| || |||| ||| ||||||| ||||| || |||
Sbjct 13789 ACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGTGG 13730
Query 1411 ACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAA 1470
|| || || |||| | | || |||||||||||| | || || |||||| ||||
Sbjct 13729 ACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGGCGA- 13671
Query 1471 TTTTTGTTAAGTCAGCAGCAGCGT---GCGAAAAATAACGCCCGTCT-GGCAAACGTC-T 1525
|| || ||||| ||||| ||| || | |||||| || ||| | |||| | |
Sbjct 13670 -TTACCTTGAGTCA-CAGCAACGTAAGGCAATAAATAA--TCCATCTCGTCAAAATACAT 13615
Query 1526 TTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAA 1577
| || || || || | || || ||||| || |||||| | ||| |||||
Sbjct 13614 TCAAGACTAAGCATTTAAACATTTGGGTTTCTGCGCGTGAGCAGTACTTCAA 13563
>seq7098
Length=564653
Score = 100 bits (110), Expect = 7e-17
Identities = 231/346 (67%), Gaps = 4/346 (1%)
Strand=Plus/Plus
Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732
||| || || ||||||||||| || || | ||| ||| ||||| || || | | |||
Sbjct 66326 GTTGTAGAATATTTCGATGTAGTCGAACACATCCTGGCGTGCTTCATCGCGTGAACGGTA 66385
Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792
| | | |||||||||||| || || || | ||| || | || || || || ||
Sbjct 66386 AACCCTGCGACGTATCCGTTCACGCTTTAGAAGATTGAAGAAGGTCTCGGCCACCGCATT 66445
Query 18793 GTCATGACAGTTACCGCGACGGCTCAT--ACTGCCCTCCAGCCCGTGTGATTTCAGGAAC 18850
|||||| ||||| ||||| |||||||| | || |||| ||| | ||||||
Sbjct 66446 GTCATGGCAGTTGCCGCGTCGGCTCATCGAATG--AACCAGATTGTGGTGCCTGAGGAAC 66503
Query 18851 GACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTT 18910
|| ||| || ||| ||| |||| || ||||| || || | |||||||| ||
Sbjct 66504 GAGGCCCAGTCCATGCTGGTGAACTGCGAACCCTGATCCGAGTGGATCAGCACCTTGTTC 66563
Query 18911 TGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATC 18970
| || || || |||||||| ||||| || || || | || || | || | ||
Sbjct 66564 TTCGGCTTGCGCCGCCACACAGCCATGAGCAGAGCCTGCAACACGACGTCGGTGGTTTGG 66623
Query 18971 CGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAA 19016
|| |||||||| |||||| || || ||||| | |||||||
Sbjct 66624 TGGCTCTGCATTGCCCAGCCGATCACACGACGCGAATAGAGGTCAA 66669
Score = 89.7 bits (98), Expect = 1e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732
||| || ||||| ||||||||||| || | || ||||||||| || || | | |||
Sbjct 483 GTTGTAGAACATCTCGATGTAATCGAACACGTCCTGGCGAGCTTCATCGCGTGAACGGTA 424
Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792
| ||| |||||| || || ||||| || | ||| || || || || ||||||||
Sbjct 423 AACCTTGCGGCGTATCCGCTCTCGCTTCAGAAGGTTGAAGAAGCTCTCGGCCACTGCGTT 364
Query 18793 GTCATGACAGTTACCGCGACGGCTCAT 18819
|||||| ||||| | ||| ||||||||
Sbjct 363 GTCATGGCAGTTGCAGCGTCGGCTCAT 337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127081270547760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |