Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq7304 156 1e-33 seq7098 100 7e-17 >seq7304 Length=19908 Score = 156 bits (172), Expect = 1e-33 Identities = 544/832 (65%), Gaps = 24/832 (3%) Strand=Plus/Minus Query 758 TGTTGCCGCACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGT 817 ||||||| ||||| || || ||||||||| | ||| | ||| | | || ||||| | Sbjct 14382 TGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTT 14323 Query 818 GGCAGCTATTTGTGATCTGCT-GTGCGTTTGGCTGGGTCAATAAAGGCACCCGGTTGCGC 876 ||||| ||||| || |||| || | || |||||||| |||| ||| || Sbjct 14322 GGCAGAAATTTGGAAT-TGCTTGTACTTTCGGCTGGGTTCGTAAAAAGGATGGGTACCGT 14264 Query 877 CGCTTCCGGGAGGTGTACACCGAAATCCCCCGTAAGAACGGCAAATCAGCAATCTCTGCC 936 || ||| ||||| || ||||| || ||||| || || || |||||||| | || Sbjct 14263 CGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAGCT 14204 Query 937 GGTGTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGT 996 |||||||| || || ||||| |||| || | ||| || || || | ||| Sbjct 14203 GGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTGGT 14144 Query 997 GCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGC 1056 || || || || ||||| || |||||||| ||| || || ||| | ||| || Sbjct 14143 GCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGCGT 14084 Query 1057 ACACCCA----TGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT-CAAACATGAACC 1111 |||| || ||| || ||| || || || | || || || | |||| Sbjct 14083 TCACCTGATTTTGTTGA-GGCAGCT---GGAATACAGATAAATGCTGGCAGTCTTGAAAT 14028 Query 1112 GTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCAGGTGATGGTTCATCAC 1171 || || |||||| | |||||| | | | ||| | || |||||| |||| Sbjct 14027 A-CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTCAC 13969 Query 1172 CCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCACAA 1231 | || ||||| | |||||||||||||||||||| || |||| | || ||| | Sbjct 13968 CGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACACTA 13909 Query 1232 TGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGT 1291 ||| || || ||||||||||| ||||||||| |||||| | || || || | || | Sbjct 13908 TGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGGTT 13849 Query 1292 ACAACATTGAGGGGCCGTGCTACGACAAACG-GCGGGAAGTCATCGAGATGCTCAACGGC 1350 ||| ||||| || || || ||||| || | | ||| || ||| | || Sbjct 13848 TCAATATTGATGGTCCTTGTCACGACTTGCGTTTACGTATTCA-AGACATGTTGCTTGGT 13790 Query 1351 TCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGG 1410 | ||||| | ||||| ||||| || |||| ||| ||||||| ||||| || ||| Sbjct 13789 ACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGTGG 13730 Query 1411 ACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAA 1470 || || || |||| | | || |||||||||||| | || || |||||| |||| Sbjct 13729 ACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGGCGA- 13671 Query 1471 TTTTTGTTAAGTCAGCAGCAGCGT---GCGAAAAATAACGCCCGTCT-GGCAAACGTC-T 1525 || || ||||| ||||| ||| || | |||||| || ||| | |||| | | Sbjct 13670 -TTACCTTGAGTCA-CAGCAACGTAAGGCAATAAATAA--TCCATCTCGTCAAAATACAT 13615 Query 1526 TTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAA 1577 | || || || || | || || ||||| || |||||| | ||| ||||| Sbjct 13614 TCAAGACTAAGCATTTAAACATTTGGGTTTCTGCGCGTGAGCAGTACTTCAA 13563 >seq7098 Length=564653 Score = 100 bits (110), Expect = 7e-17 Identities = 231/346 (67%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732 ||| || || ||||||||||| || || | ||| ||| ||||| || || | | ||| Sbjct 66326 GTTGTAGAATATTTCGATGTAGTCGAACACATCCTGGCGTGCTTCATCGCGTGAACGGTA 66385 Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792 | | | |||||||||||| || || || | ||| || | || || || || || Sbjct 66386 AACCCTGCGACGTATCCGTTCACGCTTTAGAAGATTGAAGAAGGTCTCGGCCACCGCATT 66445 Query 18793 GTCATGACAGTTACCGCGACGGCTCAT--ACTGCCCTCCAGCCCGTGTGATTTCAGGAAC 18850 |||||| ||||| ||||| |||||||| | || |||| ||| | |||||| Sbjct 66446 GTCATGGCAGTTGCCGCGTCGGCTCATCGAATG--AACCAGATTGTGGTGCCTGAGGAAC 66503 Query 18851 GACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTT 18910 || ||| || ||| ||| |||| || ||||| || || | |||||||| || Sbjct 66504 GAGGCCCAGTCCATGCTGGTGAACTGCGAACCCTGATCCGAGTGGATCAGCACCTTGTTC 66563 Query 18911 TGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATC 18970 | || || || |||||||| ||||| || || || | || || | || | || Sbjct 66564 TTCGGCTTGCGCCGCCACACAGCCATGAGCAGAGCCTGCAACACGACGTCGGTGGTTTGG 66623 Query 18971 CGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAA 19016 || |||||||| |||||| || || ||||| | ||||||| Sbjct 66624 TGGCTCTGCATTGCCCAGCCGATCACACGACGCGAATAGAGGTCAA 66669 Score = 89.7 bits (98), Expect = 1e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732 ||| || ||||| ||||||||||| || | || ||||||||| || || | | ||| Sbjct 483 GTTGTAGAACATCTCGATGTAATCGAACACGTCCTGGCGAGCTTCATCGCGTGAACGGTA 424 Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792 | ||| |||||| || || ||||| || | ||| || || || || |||||||| Sbjct 423 AACCTTGCGGCGTATCCGCTCTCGCTTCAGAAGGTTGAAGAAGCTCTCGGCCACTGCGTT 364 Query 18793 GTCATGACAGTTACCGCGACGGCTCAT 18819 |||||| ||||| | ||| |||||||| Sbjct 363 GTCATGGCAGTTGCAGCGTCGGCTCAT 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127081270547760