Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq7272 149 1e-31 >seq7272 Length=98981 Score = 149 bits (164), Expect = 1e-31 Identities = 628/976 (64%), Gaps = 27/976 (3%) Strand=Plus/Minus Query 1560 CCGAGGCCGGTGGCATCAATCCCGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGG 1619 || || || |||| |||||| | ||||| | | ||||||||||| || || | | |||| Sbjct 42044 CCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTGTATTTCTCTGTCATCTGGCGG 41985 Query 1620 ATGGATTCTGCCTGGGTGGCAAAGTCCATGCCTTTCCACTGGTGACGTTCAAGGATCCTG 1679 ||| ||| ||||| | |||||||| || || |||| || || || || | | Sbjct 41984 ATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAACTGCATGCGCTCCAGCATGCGG 41925 Query 1680 AATTTGCCACCGGCCACCACCGGCGGTGCCAGCACCACGCATCCGGCGCTGTCGCCACGG 1739 || ||||| || | | | ||||| |||||||| || || || |||||| | Sbjct 41924 AACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCGCCGAGTCGCCC--G 41867 Query 1740 TGTGAC--GGGTCGTAACCAATCCATACCGGGCGGGAGCCGAACGGATTTGCGGCAAACG 1797 | || | ||||| || |||||||| || || ||| ||||| | || | Sbjct 41866 TATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCCAAACGGCCGCAACGTGAAGG 41807 Query 1798 GCGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCATACAGCGTTGCAGCTCCTCGAAC 1856 || | || ||| | ||| ||| |||| | ||||| |||| | | Sbjct 41806 GCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATGGCAGCGCATCAGCGTGGACAGC 41748 Query 1857 GGGAACAC--CGACGCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGT 1914 ||||| || ||| | |||| || ||||| | ||||||| |||||| | | || | Sbjct 41747 GGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCACATGAGCAGGTTGTCCCATTCCT 41690 Query 1915 CGGCGCTGTTTTCGCGTTTGAGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGG 1974 || | | ||| || | |||| ||||||||| |||||||||| | | | Sbjct 41689 CGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGATTGCAGCCGCCGCGCTGCG 41630 Query 1975 CGTCCTCAATGGTGACAATCTGCCGCCA---CTGGCCGTCCGCACAGAGAAGCCCACCGG 2031 | ||| | ||||||||||||||||| || | | || || | | |||||| | | Sbjct 41629 CATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCCTC-GC-CGGTGAAGCCTCCAGC 41572 Query 2032 CAAGGGCGTTATGACTGACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGT 2091 || | ||| ||| || | ||| | || | ||| || ||||||| | || Sbjct 41571 CAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTCCTTTT---TGGCGCGCTTCTTGT 41516 Query 2092 TGAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGA 2151 ||| |||| | ||| | || ||||| | |||| ||| || || ||||| | Sbjct 41515 TGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGCAGGCTGCTGGGCGTGGA-A 41457 Query 2152 AATAG-GTCGATCGCAGGTGACTCTGTGAGGCCATACCTGATGCCACCTTACGCAGTACC 2210 || || ||| ||| || | || ||||||||| |||||||| | ||| || Sbjct 41456 AACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCTGGCCACCTTCCACAGCTCC 41397 Query 2211 TGAAAATTCGGGATCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGGCTCTGTGCG 2270 || || || ||| || | ||||||| || || | ||||| | ||| ||| Sbjct 41396 GTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTGCCGTGGTACGACTGCGCG 41337 Query 2271 GTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCACCGTTATTGCCCAGGACAATCGGG 2330 ||| || | | ||||| || ||| ||| | || || ||||| |||||| || ||| Sbjct 41336 GTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCC---ATTGCTCAGGACGATGGGG 41280 Query 2331 TCACCGGTCAGGTCAACGTC---AACCAGCCGGGCAAAGGCGATGATGTATTCGCGGAAC 2387 || || ||| || | || | | | |||||| ||||||||||| | ||||| Sbjct 41279 TCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAAACGCGATGATGTACTGCCGGAAA 41220 Query 2388 ACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCG 2447 |||| ||||||| |||||||| ||||||||||| || | || || |||||||| Sbjct 41219 ACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATTGCGGCCCGTCTTCAGGGCA 41160 Query 2448 CGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGAATA 2507 | ||| ||||||||| || || |||| || || |||||||| ||||| ||||| Sbjct 41159 TCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGATCTGGCGCGATTTGAGAATG 41100 Query 2508 TCGCGGATGCGGTGCT 2523 |||| |||| |||| Sbjct 41099 GCGCGCGTGCGCTGCT 41084 Score = 111 bits (122), Expect = 3e-20 Identities = 194/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 16852 CGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTG--GACA 16909 ||||| || ||||||||||||||||| ||||| |||| || | | | | || |||| Sbjct 25072 CGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTCGACA 25015 Query 16910 AGCCCAT-CACTGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAATTCCGT 16968 ||||||| ||| || | || | |||||||| || |||||||||||||| ||||| Sbjct 25014 AGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGC 24956 Query 16969 GAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAATCCAAC 17028 || || || | ||||| ||| | || | | |||||| || || |||| Sbjct 24955 GAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAAC 24896 Query 17029 GATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACACCGGTGCCT 17088 | ||| | ||||||||||| || ||| | ||||||||||| || || ||||| Sbjct 24895 ACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCG 24836 Query 17089 CCTCTCGAAAACCTGACCCTGCGCCAGCGTATTACCGA 17126 || || ||| ||||| | |||||||| || ||||| Sbjct 24835 CCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798 Score = 91.5 bits (100), Expect = 3e-14 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 581 CGGCATCGGTGACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGC 640 ||| |||| | | || | ||||||||||||||| || || | ||||||| ||| | Sbjct 43008 CGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCC 42949 Query 641 GGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCA 700 | |||||||||||||||||||| |||||||| || | || ||| || || | ||||| Sbjct 42948 GAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCA 42889 Query 701 GGCCGTACAGCTCCTGATTAATATCCGGCT 730 | || || | ||||| | | ||| |||| Sbjct 42888 GTCCATAGATTTCCTGGTGCACATCGGGCT 42859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107468778391220