Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_022750.1
Length=33628
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 149 1e-31
>seq7272
Length=98981
Score = 149 bits (164), Expect = 1e-31
Identities = 628/976 (64%), Gaps = 27/976 (3%)
Strand=Plus/Minus
Query 1560 CCGAGGCCGGTGGCATCAATCCCGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGG 1619
|| || || |||| |||||| | ||||| | | ||||||||||| || || | | ||||
Sbjct 42044 CCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTGTATTTCTCTGTCATCTGGCGG 41985
Query 1620 ATGGATTCTGCCTGGGTGGCAAAGTCCATGCCTTTCCACTGGTGACGTTCAAGGATCCTG 1679
||| ||| ||||| | |||||||| || || |||| || || || || | |
Sbjct 41984 ATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAACTGCATGCGCTCCAGCATGCGG 41925
Query 1680 AATTTGCCACCGGCCACCACCGGCGGTGCCAGCACCACGCATCCGGCGCTGTCGCCACGG 1739
|| ||||| || | | | ||||| |||||||| || || || |||||| |
Sbjct 41924 AACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCGCCGAGTCGCCC--G 41867
Query 1740 TGTGAC--GGGTCGTAACCAATCCATACCGGGCGGGAGCCGAACGGATTTGCGGCAAACG 1797
| || | ||||| || |||||||| || || ||| ||||| | || |
Sbjct 41866 TATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCCAAACGGCCGCAACGTGAAGG 41807
Query 1798 GCGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCATACAGCGTTGCAGCTCCTCGAAC 1856
|| | || ||| | ||| ||| |||| | ||||| |||| | |
Sbjct 41806 GCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATGGCAGCGCATCAGCGTGGACAGC 41748
Query 1857 GGGAACAC--CGACGCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGT 1914
||||| || ||| | |||| || ||||| | ||||||| |||||| | | || |
Sbjct 41747 GGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCACATGAGCAGGTTGTCCCATTCCT 41690
Query 1915 CGGCGCTGTTTTCGCGTTTGAGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGG 1974
|| | | ||| || | |||| ||||||||| |||||||||| | | |
Sbjct 41689 CGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGATTGCAGCCGCCGCGCTGCG 41630
Query 1975 CGTCCTCAATGGTGACAATCTGCCGCCA---CTGGCCGTCCGCACAGAGAAGCCCACCGG 2031
| ||| | ||||||||||||||||| || | | || || | | |||||| | |
Sbjct 41629 CATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCCTC-GC-CGGTGAAGCCTCCAGC 41572
Query 2032 CAAGGGCGTTATGACTGACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGT 2091
|| | ||| ||| || | ||| | || | ||| || ||||||| | ||
Sbjct 41571 CAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTCCTTTT---TGGCGCGCTTCTTGT 41516
Query 2092 TGAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGA 2151
||| |||| | ||| | || ||||| | |||| ||| || || ||||| |
Sbjct 41515 TGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGCAGGCTGCTGGGCGTGGA-A 41457
Query 2152 AATAG-GTCGATCGCAGGTGACTCTGTGAGGCCATACCTGATGCCACCTTACGCAGTACC 2210
|| || ||| ||| || | || ||||||||| |||||||| | ||| ||
Sbjct 41456 AACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCTGGCCACCTTCCACAGCTCC 41397
Query 2211 TGAAAATTCGGGATCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGGCTCTGTGCG 2270
|| || || ||| || | ||||||| || || | ||||| | ||| |||
Sbjct 41396 GTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTGCCGTGGTACGACTGCGCG 41337
Query 2271 GTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCACCGTTATTGCCCAGGACAATCGGG 2330
||| || | | ||||| || ||| ||| | || || ||||| |||||| || |||
Sbjct 41336 GTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCC---ATTGCTCAGGACGATGGGG 41280
Query 2331 TCACCGGTCAGGTCAACGTC---AACCAGCCGGGCAAAGGCGATGATGTATTCGCGGAAC 2387
|| || ||| || | || | | | |||||| ||||||||||| | |||||
Sbjct 41279 TCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAAACGCGATGATGTACTGCCGGAAA 41220
Query 2388 ACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCG 2447
|||| ||||||| |||||||| ||||||||||| || | || || ||||||||
Sbjct 41219 ACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATTGCGGCCCGTCTTCAGGGCA 41160
Query 2448 CGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGAATA 2507
| ||| ||||||||| || || |||| || || |||||||| ||||| |||||
Sbjct 41159 TCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGATCTGGCGCGATTTGAGAATG 41100
Query 2508 TCGCGGATGCGGTGCT 2523
|||| |||| ||||
Sbjct 41099 GCGCGCGTGCGCTGCT 41084
Score = 111 bits (122), Expect = 3e-20
Identities = 194/278 (70%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 16852 CGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTG--GACA 16909
||||| || ||||||||||||||||| ||||| |||| || | | | | || ||||
Sbjct 25072 CGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTCGACA 25015
Query 16910 AGCCCAT-CACTGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAATTCCGT 16968
||||||| ||| || | || | |||||||| || |||||||||||||| |||||
Sbjct 25014 AGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGC 24956
Query 16969 GAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAATCCAAC 17028
|| || || | ||||| ||| | || | | |||||| || || ||||
Sbjct 24955 GAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAAC 24896
Query 17029 GATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACACCGGTGCCT 17088
| ||| | ||||||||||| || ||| | ||||||||||| || || |||||
Sbjct 24895 ACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCG 24836
Query 17089 CCTCTCGAAAACCTGACCCTGCGCCAGCGTATTACCGA 17126
|| || ||| ||||| | |||||||| || |||||
Sbjct 24835 CCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798
Score = 91.5 bits (100), Expect = 3e-14
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 581 CGGCATCGGTGACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGC 640
||| |||| | | || | ||||||||||||||| || || | ||||||| ||| |
Sbjct 43008 CGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCC 42949
Query 641 GGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCA 700
| |||||||||||||||||||| |||||||| || | || ||| || || | |||||
Sbjct 42948 GAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCA 42889
Query 701 GGCCGTACAGCTCCTGATTAATATCCGGCT 730
| || || | ||||| | | ||| ||||
Sbjct 42888 GTCCATAGATTTCCTGGTGCACATCGGGCT 42859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107468778391220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |