Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_022915.1 Length=40471 Score E Sequences producing significant alignments: (Bits) Value seq9777 192 2e-44 seq11405 156 1e-33 >seq9777 Length=39614 Score = 192 bits (212), Expect = 2e-44 Identities = 393/577 (68%), Gaps = 28/577 (5%) Strand=Plus/Plus Query 33746 CATGTAGGCGGCCACATCCTTCTCAAACTGCGCCCACCCAGCGACGATGCTGGCGCGCAT 33805 ||||| ||||| || || ||| ||||| ||||| || || ||||| ||||||||| Sbjct 11549 CATGT--GCGGCGACGTCAGCCTCGAACTGGGCCCAGCCCGCAACGATCTTGGCGCGCAG 11606 Query 33806 GGCGGGGTCTGGCATATACCAGCAGTGACGCTCCTCGATCAGCGTGCCATCGTCGGTCCA 33865 | |||| || | ||||||||||| || ||||| | ||| | ||| ||||||| Sbjct 11607 CTCCGGGTTCGGGACGTACCAGCAGTGGCGTTCCTCCACCAGTTCG---TCGCCGGTCCA 11663 Query 33866 ACTGGATGCCATGAAAAGGATGCGCTCGCTGCCGCTGACCATGCACTGCTGCTCCATTTG 33925 | || |||||||| || | |||||| ||||||||||| ||| || ||||| || Sbjct 11664 CTTCGAAGCCATGAACAGCACTCGCTCGGCACCGCTGACCATCGCCTGATGTTCCATCTG 11723 Query 33926 GGCGCGATAGTGATCGGGCAGGTGATCGCCGTTGGCTTCGTCCCAATGGGGATAGCGCAG 33985 | | ||||| ||||||| ||| || | || | | |||| | ||||| Sbjct 11724 CACCTGGTAGTGCAGCGGCAGGTCATCA---TTCCCGTCATGC--ATGGCCAGC-CGCAG 11777 Query 33986 TGACTCGTTGAGGCTCTTGTGCTCGAAGCCTGTGTCTTCCAGCAGTGTCAGGCCGTCGAA 34045 |||||||| |||||||||||| | ||||| |||||||| ||||| |||||||| Sbjct 11778 GTCTTCGTTGAGCGACTTGTGCTCGAACGCGGTGTCCTCCAGCAGCGTCAGACCGTCGAA 11837 Query 34046 GCTGGCCGAGTAGCGACCATCAGTTCCCGCCATC----GGATACAGCTCTTCGCCGATGA 34101 |||||||||| || | || | ||||| | || |||||||| |||||||||| Sbjct 11838 GCTGGCCGAG----AACTTGCCGTCCACGCCAACGCAGGGGTACAGCTCCTCGCCGATGA 11893 Query 34102 TCTTCTCGGCCAGTGGACGGGCCAGCGCTTCGGCACGGTGACCCTCAGCGAATATGCGCA 34161 | ||||||||||||| | ||||| ||||| || || || |||||||| ||| Sbjct 11894 TGGTCTCGGCCAGTGGCCTTGCCAGGTCTTCGAACCGATGGCCGTCAGCGAA---GCGTT 11950 Query 34162 GCACAGCCGGATCAATCTCGGCATCCACGATGCCTGTTGCGCGCTCATGCAACAGGGCGG 34221 ||| | || | | || || | | || || ||| ||| ||| ||| | Sbjct 11951 GCAAGGTCGCGGCGTCGTGCTCAACCGCCACACCGGTGGCGAACTCGCGCACCAGCTGGC 12010 Query 34222 AGCGGGTCCGGTAGGGGCTAATGCCCAACATTACGGGGGCGTCACTAGCATTCA---GAG 34278 ||||||| ||||||||| ||||| |||| | || || || || || || | | | Sbjct 12011 TGCGGGTCTTGTAGGGGCTGCAGCCCATCATTGCCGGCGCATCGCTGGCGTTGAAGTGGG 12070 Query 34279 CGGTGTGACGATGCGCAGCCCATTCTGGGGTGCCTTG 34315 ||| | || || ||| |||||| |||||||| || Sbjct 12071 CGGCG---CGGTGGGCATGCCATTCCGGGGTGCCCTG 12104 >seq11405 Length=110570 Score = 156 bits (172), Expect = 1e-33 Identities = 358/530 (68%), Gaps = 13/530 (2%) Strand=Plus/Plus Query 33750 TAGGCGGCCACATCCTTCTCAAACTGCGCCCACCCAGCGACGATGCTGGCGCGCATGGCG 33809 ||||| ||||| ||| | | |||| |||| || || | ||| |||||||| | Sbjct 78537 TAGGCCGCCACCTCCAGGGCCAGCTGCTCCCAGCCGGCCAGGATCTGGGCGCGCAGCTCA 78596 Query 33810 GGGTCTGGCATATACCAGCAGTGACGCTCCTCGATCAGCGTGCCATCGTCGGTCCAACTG 33869 |||| ||| | |||||||| || ||| ||| | ||| ||||| ||| | ||| | Sbjct 78597 GGGTTCGGCGTGTACCAGCAATGCAGCTGCTCCAGCAGGGTGCCGTCGGGCGCCCACTTC 78656 Query 33870 GATGCCATGAAAAGGATGCGCTCGCTGCCGCTGACCA-TGCACTGCTGCTCCATTTGGGC 33928 | |||||||| |||||||| |||| ||| || ||| |||||||||||| || | Sbjct 78657 GTGGCCATGAACAGGATGCGATCGCAACCGGCCACAGCTGC-CTGCTGCTCCATCTGCAC 78715 Query 33929 GCGATAGTGATCGGGCAGGTGATCGCCGTT---GGCTTCGTCCCAATGGGGATAGCGCAG 33985 | || || ||||||| |||| | | | ||| || |||| |||||| Sbjct 78716 CTGGTACTGCAGCGGCAGGTCGGCGCCCGTACAGCCCTCGCCC--ATGGCCGC-GCGCAG 78772 Query 33986 TGACTCGTTGAGGCTCTTGTGCTCGAAGCCTGTGTCTTCCAGCAGTGTCAGGCCGTCGAA 34045 ||||| | ||||||||||||||| || ||| | || | |||| ||||||||| Sbjct 78773 GCGGTCGTTCAAGCTCTTGTGCTCGAACCCGACGTCGTTCATGAAGGTCAAGCCGTCGAA 78832 Query 34046 GCTGGCCGAGTAGC-GACCATCAGTTCCCGCCATCGGATACAGCTCTTCGCCGATGATCT 34104 |||||||||| ||| || || || ||| | ||| | ||||| ||||||||||||| Sbjct 78833 GCTGGCCGAG-AGCTTGCCCTCGGTGCCCACGCACGGCGAAAGCTCCTCGCCGATGATCT 78891 Query 34105 TCTCGGCCAGTGGACGGGCCAGCGCTTCGGCACGGTGACCCTCAGCGAATATGCGCAGCA 34164 |||||||| || |||||||| || ||| ||||| || || ||||| |||| Sbjct 78892 CTTCGGCCAGCGGCCGGGCCAGGGCCTCGAAGCGGTGGCCGTCGGCGAAGCGGCGCTCGG 78951 Query 34165 CAGCCGGATCAATCTCGGCATCCACGATGCCTGTTGCGCGCTCATGCAACAGGGCGGAGC 34224 || | || ||||| | ||||||| || || |||| ||| ||| || || Sbjct 78952 TGGCGGCGTCTGCCTCGG---GCGCGATGCCCGTGGCCAGCTCGCGCACCAGCTCGCTGC 79008 Query 34225 GGGTCCGGTAGGGGCTAATGCCCAACATTACGGGGGCGTCACTAGCATTC 34274 | ||| |||| ||| ||||| ||| | || ||||| || || ||| Sbjct 79009 GCGTCTTGTAGCTGCTGCAGCCCATCATGGCCGGCGCGTCGCTGGCGTTC 79058 Score = 82.4 bits (90), Expect = 2e-11 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 1102 TATCCGCCGCATCAACGCGAGATGCGTTCGAAGGGCATTCCGGCCGTTGGCGCCGGCTTG 1161 || ||| |||| | || ||| ||| || |||||||| ||| | | ||| |||| | Sbjct 95509 TACCCGGCGCACGAGCGGGAGGCGCGCTCCAAGGGCATCCCGACGCTGGGCAGCGGCCGG 95568 Query 1162 ATCTTTACGGTGTCGGACGACGACATCAAGATTGACCCATTCAAGGTTCCAGACCATTGG 1221 ||||| | ||| ||| ||| ||||||| | | || ||| | | || | || ||| Sbjct 95569 ATCTTCCCCGTGGAGGAGGACAGCATCAAGGTGCAGCCCTTCCCGATCCCTGCTCACTGG 95628 Query 1222 CATGTGC-TCAACGGCGTGGATTTCGGATGGGATCACCCTCAAG--CGCATGTGCAGCTG 1278 || || |||||||| |||| ||||| ||||||||||| || | ||| |||||| || Sbjct 95629 G-TGCGCATCAACGGCCTGGACTTCGGCTGGGATCACCC-CACGGCCGC-CGTGCAGTTG 95685 Query 1279 GCCTGGGACAAGGAC 1293 ||||||||| |||| Sbjct 95686 GCCTGGGACCGGGAC 95700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129362462539214