Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023006.1
Length=43564
Score E
Sequences producing significant alignments: (Bits) Value
seq9463 289 8e-74
seq10139 197 4e-46
seq12126 129 2e-25
seq8424 105 2e-18
seq9673 102 2e-17
seq7352 98.7 3e-16
seq551 95.1 3e-15
seq8280 93.3 1e-14
seq6714 91.5 4e-14
seq10415 86.0 2e-12
seq7041 86.0 2e-12
seq562 84.2 6e-12
seq10882 80.6 7e-11
>seq9463
Length=63583
Score = 289 bits (320), Expect = 8e-74
Identities = 283/365 (78%), Gaps = 0/365 (0%)
Strand=Plus/Minus
Query 37148 ATCACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCG 37207
||||||||||| | ||| | || |||||||| || || || |||||| |||||||||
Sbjct 40198 ATCACTTCGGCAAGACGGTGTTCGTCACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGGCG 40139
Query 37208 ACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAA 37267
| |||||||||||||| ||||||||||| || || |||||||| ||||||||||| |
Sbjct 40138 AACTGGGCATCATCCCCGGCTCGATGGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGA 40079
Query 37268 ATTCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAG 37327
| | || ||||||||| | ||| ||||| ||||| || ||||||||| ||| |
Sbjct 40078 ACGCGGACTCGTTCTGCACCTGCTCGCACGGCGCCGGCCGGGCGATGAGCCGCAACGAGG 40019
Query 37328 CAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCA 37387
| || || || ||||| || ||||| || | |||||| | || |||| |||||||
Sbjct 40018 CCAAGCGGCGCTTCACGGTGGAGGACCACGTCCGCGCCACCGAGGGCGTCGAATGCCGCA 39959
Query 37388 AAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGG 37447
| || ||||| ||||||||||| ||||| ||| |||||||||||||| || || ||||
Sbjct 39958 AGGACGCCGAGGTGATCGACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGATGG 39899
Query 37448 CCGCGCAATCCGCCCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGG 37507
|||| || | | ||||||||| ||||| ||||| |||||||| || || ||||||||||
Sbjct 39898 CCGCCCAGGCGGACCTGGTGGATATCGTCCACACCCTGCGCCAGGTGGTGTGCGTGAAGG 39839
Query 37508 GTTGA 37512
| |||
Sbjct 39838 GCTGA 39834
>seq10139
Length=54691
Score = 197 bits (218), Expect = 4e-46
Identities = 210/280 (75%), Gaps = 13/280 (5%)
Strand=Plus/Minus
Query 37229 CGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTGCTCTT 37288
||||||| || ||||| ||||| || |||||| ||| || | || ||||||||| | |
Sbjct 13863 CGATGGGCGCCAAGTCGTTCATTGTGCGCGGCCGGGGCAACCCGGACTCGTTCTGCACGT 13804
Query 37289 GCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCACAGTCG 37348
|| ||||| || || || |||||||||| ||| || || || |||||||| |
Sbjct 13803 GCTCGCACGGCGCGGGACGGGCGATGAGCCGGAACGAGGCCAAGCGGCGGTTCACGG--- 13747
Query 37349 AGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCGACG 37408
|||| || || || |||||||||| || || ||||| ||||||||||
Sbjct 13746 ----------GGCGCCCCCCGCCGGCGTCGAGTGCCGGAAGGACGCCGAGGTGATCGACG 13697
Query 37409 AGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTGGTGG 37468
| ||||| ||| |||||||||||||| ||||| |||||||| || ||| |||||| |
Sbjct 13696 AAACGCCGATGGCCTACAAGGACATCGACGCGGTGATGGCCGCCCAGGCCGACCTGGTCG 13637
Query 37469 ACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGG 37508
| ||||||||||| |||||||| ||||| |||||||||||
Sbjct 13636 ATATCGTGCACACCCTGCGCCAGGTCGTGTGCGTGAAGGG 13597
>seq12126
Length=13531
Score = 129 bits (142), Expect = 2e-25
Identities = 239/349 (68%), Gaps = 4/349 (1%)
Strand=Plus/Minus
Query 37166 TGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTG 37225
||||||| || ||||| || || || | || ||||||||||| ||||||||||| || |
Sbjct 5574 TGCTGGTGACGCGCAAGGGCGCGGTCAGCGCGCGCGAGGGCGAGCTGGGCATCATTCCCG 5515
Query 37226 GCTCGATGGGT--GCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTG 37283
|| ||||| ||| || | |||||| || |||||||| || | || |||
Sbjct 5514 GCAGCATGGGCACGCGCAGCTA--CATCGTGCGTGGCAAGGGCAACGCGGACAGCTTCCA 5457
Query 37284 CTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCAC 37343
| || |||||| ||||||| || |||||||| | || || | | | ||||
Sbjct 5456 CAGCTGTAGCCACAGTGCCGGCCGGGGAATGAGCCGTGGCGCTGCGCGGCAGCAGATCAC 5397
Query 37344 AGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGAT 37403
| | | || | ||||||| | | || |||||||| || || ||| |
Sbjct 5396 GCTGGCCCAGCACCGCGAGGCCACCGCGCATGTGGAATGCCGCAAGGACAGCGGCGTGCT 5337
Query 37404 CGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCT 37463
|| ||| |||| || || |||||| ||||| | || ||||||||||| || |||
Sbjct 5336 GGATGAGTCGCCGGCCGCGTACAAGTCGATCGACGATGTGATGGCCGCGCAGCTCGACCT 5277
Query 37464 GGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512
||| ||| | |||||||||||||| || || | ||||||||||| |||
Sbjct 5276 GGTCGACGTGGTGCACACGCTGCGGCAGGTGCTGTGCGTGAAGGGATGA 5228
>seq8424
Length=263062
Score = 105 bits (116), Expect = 2e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122
|||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 50501 TGGCGATCCCGACAGGATTCGAACCTGTGACCATCGGCTTAGAAGGCCGGTGCTCTATCC 50442
Query 21123 AGCTGAGCTACGGGGCCG 21140
|||||||||||||| |||
Sbjct 50441 AGCTGAGCTACGGGACCG 50424
>seq9673
Length=4878
Score = 102 bits (112), Expect = 2e-17
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121
||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 563 ATGGCGATCCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATC 504
Query 21122 CAGCTGAGCTACGGGGCCG 21140
||||||||||||||| |||
Sbjct 503 CAGCTGAGCTACGGGACCG 485
>seq7352
Length=278960
Score = 98.7 bits (108), Expect = 3e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122
||||| ||| ||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214
Query 21123 AGCTGAGCTACGGG 21136
|||||||||| |||
Sbjct 263215 AGCTGAGCTAAGGG 263228
>seq551
Length=68878
Score = 95.1 bits (104), Expect = 3e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121
|||| | || |||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 2834 ATGGTGCGCCTGACAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATC 2893
Query 21122 CAGCTGAGCTACGGG 21136
|| ||||||||| ||
Sbjct 2894 CAACTGAGCTACAGG 2908
>seq8280
Length=144189
Score = 93.3 bits (102), Expect = 1e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122
||||| ||| ||||| ||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029
Query 21123 AGCTGAGCTACGGG 21136
|||||||||| |||
Sbjct 26030 AGCTGAGCTAAGGG 26043
>seq6714
Length=1758414
Score = 91.5 bits (100), Expect = 4e-14
Identities = 199/294 (68%), Gaps = 8/294 (3%)
Strand=Plus/Plus
Query 23425 AGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGTAGTTGGTCGCG 23484
|||| | | | |||||| | ||| | | || ||| || ||||| |||||| | |
Sbjct 198433 AGCATCTGCAATTCGCCACGGAATTTCTGCAGCACGATCTCGGTCGTGTAGCGATCCTGG 198492
Query 23485 CCGTCTTTTTCC---CACTTGCGTGTCTGCAGCTTGCCGATGATCGCG-CATTCACTTCC 23540
|| | | ||| || ||||| |||||||||| || || | |||| | ||
Sbjct 198493 CCCTGCTGGTCCTGCCATTTGCGGGTCTGCAGCTGACCCTCGACATAAACCTTCA-TGCC 198551
Query 23541 CTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCG---AAGAACACGACGCGGTG 23597
||| |||||| | |||| | || ||||| || || |||| |||||| ||
Sbjct 198552 CTTCTTCAGATATTGCTCGGCGACCTTGGCGAGCTGATCGTTGAAGATGACGACGTTATG 198611
Query 23598 CCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGC 23657
||| ||||||||||||||||| ||||| | | |||||| ||||| |||||| |||||
Sbjct 198612 CCACTCGGTCTTTTCCTTGCGTTCGCCCGAGTTCTTGTCGCGCCAGGATTCCGAGGTGGC 198671
Query 23658 CAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTC 23711
| || ||||||| ||| ||||| || | ||| || |||||||||||
Sbjct 198672 GACGCGGATGTTGACGACCGCATCACCCGAATTCAGCCGACGGACTTCCGGGTC 198725
>seq10415
Length=20837
Score = 86.0 bits (94), Expect = 2e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121
|||||| |||||||||| |||||||||| |||| ||||||||||| |||||||||
Sbjct 5424 ATGGCGCGCCCGACAGGAATCGAACCTGTAACCGCCGGCTTAGAAGGCCGGTGCTCTATC 5365
Query 21122 CAGCTGAGCTACGGG 21136
||| |||||||||||
Sbjct 5364 CAGTTGAGCTACGGG 5350
>seq7041
Length=191181
Score = 86.0 bits (94), Expect = 2e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 21056 GAAGTGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGC 21115
|||| | |||||||||| ||||| ||||||||| |||| ||||||||||| |||
Sbjct 50849 GAAGCGGTGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGC 50790
Query 21116 TCTATCCAGCTGAGCTACGGGGCCG 21140
||||||||| ||||||| |||||||
Sbjct 50789 TCTATCCAGTTGAGCTAAGGGGCCG 50765
>seq562
Length=22089
Score = 84.2 bits (92), Expect = 6e-12
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 21056 GAAGTGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGC 21115
|| || |||||| ||||||| ||||||||| ||||||| || ||| | ||| || ||
Sbjct 18352 GATGTTATGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGC 18293
Query 21116 TCTATCCAGCTGAGCTACGGG 21136
|||||||||||||||||||||
Sbjct 18292 TCTATCCAGCTGAGCTACGGG 18272
>seq10882
Length=41696
Score = 80.6 bits (88), Expect = 7e-11
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122
||||| ||||||| ||||||||| ||||||| || ||| | ||| || |||||||||
Sbjct 29574 TGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTATCC 29515
Query 21123 AGCTGAGCTACGGG 21136
||||||||||||||
Sbjct 29514 AGCTGAGCTACGGG 29501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139258292594708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |