Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq9463 289 8e-74 seq10139 197 4e-46 seq12126 129 2e-25 seq8424 105 2e-18 seq9673 102 2e-17 seq7352 98.7 3e-16 seq551 95.1 3e-15 seq8280 93.3 1e-14 seq6714 91.5 4e-14 seq10415 86.0 2e-12 seq7041 86.0 2e-12 seq562 84.2 6e-12 seq10882 80.6 7e-11 >seq9463 Length=63583 Score = 289 bits (320), Expect = 8e-74 Identities = 283/365 (78%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 37148 ATCACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCG 37207 ||||||||||| | ||| | || |||||||| || || || |||||| ||||||||| Sbjct 40198 ATCACTTCGGCAAGACGGTGTTCGTCACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGGCG 40139 Query 37208 ACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAA 37267 | |||||||||||||| ||||||||||| || || |||||||| ||||||||||| | Sbjct 40138 AACTGGGCATCATCCCCGGCTCGATGGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGA 40079 Query 37268 ATTCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAG 37327 | | || ||||||||| | ||| ||||| ||||| || ||||||||| ||| | Sbjct 40078 ACGCGGACTCGTTCTGCACCTGCTCGCACGGCGCCGGCCGGGCGATGAGCCGCAACGAGG 40019 Query 37328 CAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCA 37387 | || || || ||||| || ||||| || | |||||| | || |||| ||||||| Sbjct 40018 CCAAGCGGCGCTTCACGGTGGAGGACCACGTCCGCGCCACCGAGGGCGTCGAATGCCGCA 39959 Query 37388 AAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGG 37447 | || ||||| ||||||||||| ||||| ||| |||||||||||||| || || |||| Sbjct 39958 AGGACGCCGAGGTGATCGACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGATGG 39899 Query 37448 CCGCGCAATCCGCCCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGG 37507 |||| || | | ||||||||| ||||| ||||| |||||||| || || |||||||||| Sbjct 39898 CCGCCCAGGCGGACCTGGTGGATATCGTCCACACCCTGCGCCAGGTGGTGTGCGTGAAGG 39839 Query 37508 GTTGA 37512 | ||| Sbjct 39838 GCTGA 39834 >seq10139 Length=54691 Score = 197 bits (218), Expect = 4e-46 Identities = 210/280 (75%), Gaps = 13/280 (5%) Strand=Plus/Minus Query 37229 CGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTGCTCTT 37288 ||||||| || ||||| ||||| || |||||| ||| || | || ||||||||| | | Sbjct 13863 CGATGGGCGCCAAGTCGTTCATTGTGCGCGGCCGGGGCAACCCGGACTCGTTCTGCACGT 13804 Query 37289 GCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCACAGTCG 37348 || ||||| || || || |||||||||| ||| || || || |||||||| | Sbjct 13803 GCTCGCACGGCGCGGGACGGGCGATGAGCCGGAACGAGGCCAAGCGGCGGTTCACGG--- 13747 Query 37349 AGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCGACG 37408 |||| || || || |||||||||| || || ||||| |||||||||| Sbjct 13746 ----------GGCGCCCCCCGCCGGCGTCGAGTGCCGGAAGGACGCCGAGGTGATCGACG 13697 Query 37409 AGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTGGTGG 37468 | ||||| ||| |||||||||||||| ||||| |||||||| || ||| |||||| | Sbjct 13696 AAACGCCGATGGCCTACAAGGACATCGACGCGGTGATGGCCGCCCAGGCCGACCTGGTCG 13637 Query 37469 ACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGG 37508 | ||||||||||| |||||||| ||||| ||||||||||| Sbjct 13636 ATATCGTGCACACCCTGCGCCAGGTCGTGTGCGTGAAGGG 13597 >seq12126 Length=13531 Score = 129 bits (142), Expect = 2e-25 Identities = 239/349 (68%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 37166 TGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTG 37225 ||||||| || ||||| || || || | || ||||||||||| ||||||||||| || | Sbjct 5574 TGCTGGTGACGCGCAAGGGCGCGGTCAGCGCGCGCGAGGGCGAGCTGGGCATCATTCCCG 5515 Query 37226 GCTCGATGGGT--GCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTG 37283 || ||||| ||| || | |||||| || |||||||| || | || ||| Sbjct 5514 GCAGCATGGGCACGCGCAGCTA--CATCGTGCGTGGCAAGGGCAACGCGGACAGCTTCCA 5457 Query 37284 CTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCAC 37343 | || |||||| ||||||| || |||||||| | || || | | | |||| Sbjct 5456 CAGCTGTAGCCACAGTGCCGGCCGGGGAATGAGCCGTGGCGCTGCGCGGCAGCAGATCAC 5397 Query 37344 AGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGAT 37403 | | | || | ||||||| | | || |||||||| || || ||| | Sbjct 5396 GCTGGCCCAGCACCGCGAGGCCACCGCGCATGTGGAATGCCGCAAGGACAGCGGCGTGCT 5337 Query 37404 CGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCT 37463 || ||| |||| || || |||||| ||||| | || ||||||||||| || ||| Sbjct 5336 GGATGAGTCGCCGGCCGCGTACAAGTCGATCGACGATGTGATGGCCGCGCAGCTCGACCT 5277 Query 37464 GGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 ||| ||| | |||||||||||||| || || | ||||||||||| ||| Sbjct 5276 GGTCGACGTGGTGCACACGCTGCGGCAGGTGCTGTGCGTGAAGGGATGA 5228 >seq8424 Length=263062 Score = 105 bits (116), Expect = 2e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 |||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||| Sbjct 50501 TGGCGATCCCGACAGGATTCGAACCTGTGACCATCGGCTTAGAAGGCCGGTGCTCTATCC 50442 Query 21123 AGCTGAGCTACGGGGCCG 21140 |||||||||||||| ||| Sbjct 50441 AGCTGAGCTACGGGACCG 50424 >seq9673 Length=4878 Score = 102 bits (112), Expect = 2e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 563 ATGGCGATCCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATC 504 Query 21122 CAGCTGAGCTACGGGGCCG 21140 ||||||||||||||| ||| Sbjct 503 CAGCTGAGCTACGGGACCG 485 >seq7352 Length=278960 Score = 98.7 bits (108), Expect = 3e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||| ||||||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214 Query 21123 AGCTGAGCTACGGG 21136 |||||||||| ||| Sbjct 263215 AGCTGAGCTAAGGG 263228 >seq551 Length=68878 Score = 95.1 bits (104), Expect = 3e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||| | || |||||||||||||||||||||| | ||||||||||||| |||||||||| Sbjct 2834 ATGGTGCGCCTGACAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATC 2893 Query 21122 CAGCTGAGCTACGGG 21136 || ||||||||| || Sbjct 2894 CAACTGAGCTACAGG 2908 >seq8280 Length=144189 Score = 93.3 bits (102), Expect = 1e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||| ||||| ||||||||| |||||| ||||||||||||| ||||||||||| Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029 Query 21123 AGCTGAGCTACGGG 21136 |||||||||| ||| Sbjct 26030 AGCTGAGCTAAGGG 26043 >seq6714 Length=1758414 Score = 91.5 bits (100), Expect = 4e-14 Identities = 199/294 (68%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 23425 AGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGTAGTTGGTCGCG 23484 |||| | | | |||||| | ||| | | || ||| || ||||| |||||| | | Sbjct 198433 AGCATCTGCAATTCGCCACGGAATTTCTGCAGCACGATCTCGGTCGTGTAGCGATCCTGG 198492 Query 23485 CCGTCTTTTTCC---CACTTGCGTGTCTGCAGCTTGCCGATGATCGCG-CATTCACTTCC 23540 || | | ||| || ||||| |||||||||| || || | |||| | || Sbjct 198493 CCCTGCTGGTCCTGCCATTTGCGGGTCTGCAGCTGACCCTCGACATAAACCTTCA-TGCC 198551 Query 23541 CTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCG---AAGAACACGACGCGGTG 23597 ||| |||||| | |||| | || ||||| || || |||| |||||| || Sbjct 198552 CTTCTTCAGATATTGCTCGGCGACCTTGGCGAGCTGATCGTTGAAGATGACGACGTTATG 198611 Query 23598 CCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGC 23657 ||| ||||||||||||||||| ||||| | | |||||| ||||| |||||| ||||| Sbjct 198612 CCACTCGGTCTTTTCCTTGCGTTCGCCCGAGTTCTTGTCGCGCCAGGATTCCGAGGTGGC 198671 Query 23658 CAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 | || ||||||| ||| ||||| || | ||| || ||||||||||| Sbjct 198672 GACGCGGATGTTGACGACCGCATCACCCGAATTCAGCCGACGGACTTCCGGGTC 198725 >seq10415 Length=20837 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||||||||| |||||||||| |||| ||||||||||| ||||||||| Sbjct 5424 ATGGCGCGCCCGACAGGAATCGAACCTGTAACCGCCGGCTTAGAAGGCCGGTGCTCTATC 5365 Query 21122 CAGCTGAGCTACGGG 21136 ||| ||||||||||| Sbjct 5364 CAGTTGAGCTACGGG 5350 >seq7041 Length=191181 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 21056 GAAGTGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGC 21115 |||| | |||||||||| ||||| ||||||||| |||| ||||||||||| ||| Sbjct 50849 GAAGCGGTGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGC 50790 Query 21116 TCTATCCAGCTGAGCTACGGGGCCG 21140 ||||||||| ||||||| ||||||| Sbjct 50789 TCTATCCAGTTGAGCTAAGGGGCCG 50765 >seq562 Length=22089 Score = 84.2 bits (92), Expect = 6e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 21056 GAAGTGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGC 21115 || || |||||| ||||||| ||||||||| ||||||| || ||| | ||| || || Sbjct 18352 GATGTTATGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGC 18293 Query 21116 TCTATCCAGCTGAGCTACGGG 21136 ||||||||||||||||||||| Sbjct 18292 TCTATCCAGCTGAGCTACGGG 18272 >seq10882 Length=41696 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||||||| ||||||||| ||||||| || ||| | ||| || ||||||||| Sbjct 29574 TGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTATCC 29515 Query 21123 AGCTGAGCTACGGG 21136 |||||||||||||| Sbjct 29514 AGCTGAGCTACGGG 29501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139258292594708