Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq14388 86.0 1e-11 >seq14388 Length=1089484 Score = 86.0 bits (94), Expect = 1e-11 Identities = 250/362 (69%), Gaps = 35/362 (10%) Strand=Plus/Minus Query 107225 ttatatcatataat-tgtatatcatatttttcaacattaataatgttatgtcta-tatat 107282 |||||| ||||| | | || || |||| |||| | | || ||| | | | || ||||| Sbjct 808591 TTATATAATATATTATATAAAT-ATATATTTCTATAATATAAATTTATTATATAATATAT 808533 Query 107283 tgatatatgtaaatttttatctaatat-----tagtatttcat-tataat-taaatatat 107335 | ||||| || || ||| | |||||| || ||| | || ||| || ||||||||| Sbjct 808532 T-ATATAAATATATATTTCTATAATATAAATTTATTATATAATATATTATATAAATATAT 808474 Query 107336 ttttgtataatattggctgtaatttattaaatattaaattatcatctatttCTAAGGTAT 107395 ||| |||||||| | || | ||| | |||||| || | || |||||||| ||| Sbjct 808473 ATTTCTATAATATAAATT-TATTATATAATATATTATATAAATATATATTTCTATAATAT 808415 Query 107396 CATCTT-TGatataataaattatataaagtattaattcatttctcattcgaatattatta 107454 | || | |||||||| |||||||||| ||| ||| | | | || ||| |||||| Sbjct 808414 AAATTTATTATATAATATATTATATAAA-TATATATT--TCTATAATATAAAT-TTATTA 808359 Query 107455 -ataatatttaaat---atatagatt-ctggcatataatctttatgtgataatatacatc 107509 ||||||| ||||| ||||| ||| || |||||| ||||| ||| || |||| Sbjct 808358 TATAATATATAAATTAAATATATATTTCTATAATATAAA-TTTATTATATA-TAAACAT- 808302 Query 107510 taatatatgatataGATGGATTTTCATTTAGAAATTTATTTATTTTATAATATATTGAAT 107569 |||||| | | ||| | || || | || ||||||| ||||||||||| || Sbjct 808301 ----ATATGA-ACATATGAGT----ATATA-ATATAAATTTATTATATAATATATTATAT 808252 Query 107570 AA 107571 || Sbjct 808251 AA 808250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786018414002280