Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq899 125 6e-24 seq8560 96.9 3e-15 seq3764 96.9 3e-15 seq504 96.9 3e-15 >seq899 Length=2520420 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || || | Sbjct 2264402 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264461 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | |||| || ||||| || || || Sbjct 2264462 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264521 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||| | || | |||||| | || || Sbjct 2264522 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2264581 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || ||||| || || || |||||||| Sbjct 2264582 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 2264642 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 2264701 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 2264702 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 2264761 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 2264762 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 2264821 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 2264822 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 2264870 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 2264929 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 2264930 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 2264989 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 2264990 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 2265049 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 2265050 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 2265098 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 2265157 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 2265158 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 2265217 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || | || || Sbjct 2265218 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATG 2265277 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 2265278 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312 >seq8560 Length=3069389 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| |||||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 2390287 CAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2390228 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || |||||| | |||| ||||||||| || || ||||| || || || || Sbjct 2390227 TTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTTATC 2390169 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || | ||| ||||| || ||||| | || || | ||||| || || Sbjct 2390168 CTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGATGGT 2390109 Query 29754 TTTGCCAGTTAAG-GTTTTAACAAATATCTGCATTTT 29789 || || || ||| || || ||||| |||||||| || Sbjct 2390108 CTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 2390072 >seq3764 Length=1885950 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 1780304 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 1780245 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| |||||| || | |||| ||||||||| || || ||||| || || || || Sbjct 1780244 TTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 1780185 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| || ||| || || || | || || |||||||| || || Sbjct 1780184 CTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGT 1780125 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || || | | ||| || || || |||||| Sbjct 1780124 CTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094 >seq504 Length=1076656 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | | |||| ||| | || ||||||||||| || || | | || | ||| Sbjct 268490 CAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 268431 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||| || || ||||| || || || || Sbjct 268430 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 268371 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || | || || ||||| || || || | || || |||||||| || || Sbjct 268370 CTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATGGT 268311 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || || || |||||||| || Sbjct 268310 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 268275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385148500118319