Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023557.1
Length=271084
Score E
Sequences producing significant alignments: (Bits) Value
seq12839 174 3e-38
>seq12839
Length=204338
Score = 174 bits (192), Expect = 3e-38
Identities = 284/406 (70%), Gaps = 6/406 (1%)
Strand=Plus/Minus
Query 45347 GCGGTTAACTGTCATCACAACTATGTTGCCATGGAAAACCATTTTGATACCAATGTCCTG 45406
|| || || || || || || ||||| | | ||| | || |||| | | || |||
Sbjct 27702 GCCGTAAATTGCCACCATAATTATGTGGATAAAGAAGAACACTTTGGTCAGGAAGTACTG 27643
Query 45407 GTCACCCGTAAAGGTGCAGTGCGGGCGCGTATAGGTGATCTAGCGATTATCCCGGGTAGC 45466
|| || |||||||||||||| || || ||| | ||||| | ||||| ||||||
Sbjct 27642 GTAACACGTAAAGGTGCAGTACGTGCCCGTTTGGGTGAGTATGGAATTATTCCGGGTTCA 27583
Query 45467 ATGGGCGCGAAGTCGTTTATTGTCGAAGGTCTGGGTAACCAGGAAAGCTTCTGTTCATGT 45526
||||| || ||||| ||||||||| ||||| ||| || ||||| ||||||||||||
Sbjct 27582 ATGGGTGCCAAGTCATTTATTGTCAAAGGTAAGGGAAATCAGGAGTCTTTCTGTTCATGT 27523
Query 45527 TCACATGGTGCTGGTCGTTTACTGTCGCGCTCAGCGGCAGTGAAACA---ATTCAGTCTG 45583
|| ||||||||||||||| ||| | || | | |||| |||| | || | | ||
Sbjct 27522 TCGCATGGTGCTGGTCGTGTAC-ATAGCCGT--ACTGCAGCGAAAAATTTGTTTACTGTG 27466
Query 45584 GAAGACCATATCCGTGATACCGAGGGTGTGGAATGCCGTAAAGACAAAGACGTTCTTGAT 45643
||||| || || | || | |||||||||||||||||||| || ||| |||||
Sbjct 27465 GAAGATCAGATTGAACAAACTAAAGGTGTGGAATGCCGTAAAGATGCAGCCGTGATTGAT 27406
Query 45644 GAAACACCGAAGGCATATAAGTCGATTGAAGACGTGATGCGGTCACAAGACGATTTGGTG 45703
|||| || || ||||| | |||||||| |||||| ||||| ||||||||||
Sbjct 27405 GAAATCCCTTCTGCGTATAAACCTATTGAAGATGTGATGAAAGCACAAAGCGATTTGGTG 27346
Query 45704 AAAATCAAATACACTCTGAAACAGATCCTTTGTGTAAAAGGTTAAT 45749
|| | || || | | ||| | |||||||||| || ||||
Sbjct 27345 GAAGTGGTTTATACCTTAAGTCAGGTTGTTTGTGTAAAGGGATAAT 27300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 867177533936160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |