Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq12839 174 3e-38 >seq12839 Length=204338 Score = 174 bits (192), Expect = 3e-38 Identities = 284/406 (70%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 45347 GCGGTTAACTGTCATCACAACTATGTTGCCATGGAAAACCATTTTGATACCAATGTCCTG 45406 || || || || || || || ||||| | | ||| | || |||| | | || ||| Sbjct 27702 GCCGTAAATTGCCACCATAATTATGTGGATAAAGAAGAACACTTTGGTCAGGAAGTACTG 27643 Query 45407 GTCACCCGTAAAGGTGCAGTGCGGGCGCGTATAGGTGATCTAGCGATTATCCCGGGTAGC 45466 || || |||||||||||||| || || ||| | ||||| | ||||| |||||| Sbjct 27642 GTAACACGTAAAGGTGCAGTACGTGCCCGTTTGGGTGAGTATGGAATTATTCCGGGTTCA 27583 Query 45467 ATGGGCGCGAAGTCGTTTATTGTCGAAGGTCTGGGTAACCAGGAAAGCTTCTGTTCATGT 45526 ||||| || ||||| ||||||||| ||||| ||| || ||||| |||||||||||| Sbjct 27582 ATGGGTGCCAAGTCATTTATTGTCAAAGGTAAGGGAAATCAGGAGTCTTTCTGTTCATGT 27523 Query 45527 TCACATGGTGCTGGTCGTTTACTGTCGCGCTCAGCGGCAGTGAAACA---ATTCAGTCTG 45583 || ||||||||||||||| ||| | || | | |||| |||| | || | | || Sbjct 27522 TCGCATGGTGCTGGTCGTGTAC-ATAGCCGT--ACTGCAGCGAAAAATTTGTTTACTGTG 27466 Query 45584 GAAGACCATATCCGTGATACCGAGGGTGTGGAATGCCGTAAAGACAAAGACGTTCTTGAT 45643 ||||| || || | || | |||||||||||||||||||| || ||| ||||| Sbjct 27465 GAAGATCAGATTGAACAAACTAAAGGTGTGGAATGCCGTAAAGATGCAGCCGTGATTGAT 27406 Query 45644 GAAACACCGAAGGCATATAAGTCGATTGAAGACGTGATGCGGTCACAAGACGATTTGGTG 45703 |||| || || ||||| | |||||||| |||||| ||||| |||||||||| Sbjct 27405 GAAATCCCTTCTGCGTATAAACCTATTGAAGATGTGATGAAAGCACAAAGCGATTTGGTG 27346 Query 45704 AAAATCAAATACACTCTGAAACAGATCCTTTGTGTAAAAGGTTAAT 45749 || | || || | | ||| | |||||||||| || |||| Sbjct 27345 GAAGTGGTTTATACCTTAAGTCAGGTTGTTTGTGTAAAGGGATAAT 27300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867177533936160