Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq11286 96.9 4e-15 seq7835 86.0 7e-12 seq728 84.2 2e-11 seq14151 82.4 8e-11 seq8237 82.4 8e-11 >seq11286 Length=31310 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 72102 TTTGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTAC 72161 ||||||||||| || ||| ||||||| |||| ||||||||| ||||||||||||||| Sbjct 21187 TTTGGTGCCGGAGAAAGGAATCGAACCCTCGACCTTCTCATTACGAATGAGCTGCTCTAC 21128 Query 72162 CAACTGAGCTAAACCGGC 72179 ||||||||||| |||||| Sbjct 21127 CAACTGAGCTACACCGGC 21110 >seq7835 Length=204203 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/94 (83%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 76069 TGGAGGAAGCGGTGGGATTCGAACCCACGGACCGTATCACTACGGCCTC--CGGTTTTCA 76126 ||| |||||||||| ||||||||| |||||| | |||| || |||| ||||||||| Sbjct 60654 TGGCGGAAGCGGTGAGATTCGAACTCACGGAG-GACTCAC-AC--CCTCGTCGGTTTTCA 60599 Query 76127 AGACCGGTGTAATAAGCCGCTCTACCACGCTTCC 76160 ||||||||| | ||| ||||||| |||||||||| Sbjct 60598 AGACCGGTGCATTAAACCGCTCTGCCACGCTTCC 60565 >seq728 Length=7478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 74608 TTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAAC 74667 |||||| |||| ||||| ||||||||| |||| || ||||||||||| | ||||||||| Sbjct 6038 TTGGTGGGCCCACCAGGATTCGAACCTGAAACCAAGGGATTATGAGTCCCCTGCTCTAAC 5979 Query 74668 CAATTGAGCTATAGGGCC 74685 | |||||||||||| || Sbjct 5978 C-GTTGAGCTATAGGCCC 5962 >seq14151 Length=17150 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 74606 ATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTA 74665 |||||||| ||| |||||||||||||| |||||||||| ||||||| || |||||| Sbjct 466 ATTTGGTGGGCCCGGCAGGACTCGAACCCGCAACCTAGCCGTTATGAGCGGCCAGCTCTA 525 Query 74666 ACCAATTGAGCTATAGGGCC 74685 ||| ||||||||| ||| || Sbjct 526 ACC-ATTGAGCTACAGGCCC 544 >seq8237 Length=506431 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 76069 TGGAGGAAGCGGTGGGATTCGAACCCACGGACCGTATCACTACGGCCTCCGGTTTTCAAG 76128 ||| |||||||||| ||||||||| |||||| | |||| | | |||| |||||||| Sbjct 133546 TGGCGGAAGCGGTGAGATTCGAACTCACGGAG-GACTCACACCCTCGTCCG-TTTTCAAG 133603 Query 76129 ACCGGTGTAATAAGCCGCTCTACCACGCTTCC 76160 ||||||| | ||| ||||||| |||||||||| Sbjct 133604 ACCGGTGCATTAAACCGCTCTGCCACGCTTCC 133635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554250849563040