Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023561.1
Length=173276
Score E
Sequences producing significant alignments: (Bits) Value
seq11286 96.9 4e-15
seq7835 86.0 7e-12
seq728 84.2 2e-11
seq14151 82.4 8e-11
seq8237 82.4 8e-11
>seq11286
Length=31310
Score = 96.9 bits (106), Expect = 4e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 72102 TTTGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTAC 72161
||||||||||| || ||| ||||||| |||| ||||||||| |||||||||||||||
Sbjct 21187 TTTGGTGCCGGAGAAAGGAATCGAACCCTCGACCTTCTCATTACGAATGAGCTGCTCTAC 21128
Query 72162 CAACTGAGCTAAACCGGC 72179
||||||||||| ||||||
Sbjct 21127 CAACTGAGCTACACCGGC 21110
>seq7835
Length=204203
Score = 86.0 bits (94), Expect = 7e-12
Identities = 78/94 (83%), Gaps = 6/94 (6%)
Strand=Plus/Minus
Query 76069 TGGAGGAAGCGGTGGGATTCGAACCCACGGACCGTATCACTACGGCCTC--CGGTTTTCA 76126
||| |||||||||| ||||||||| |||||| | |||| || |||| |||||||||
Sbjct 60654 TGGCGGAAGCGGTGAGATTCGAACTCACGGAG-GACTCAC-AC--CCTCGTCGGTTTTCA 60599
Query 76127 AGACCGGTGTAATAAGCCGCTCTACCACGCTTCC 76160
||||||||| | ||| ||||||| ||||||||||
Sbjct 60598 AGACCGGTGCATTAAACCGCTCTGCCACGCTTCC 60565
>seq728
Length=7478
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 74608 TTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAAC 74667
|||||| |||| ||||| ||||||||| |||| || ||||||||||| | |||||||||
Sbjct 6038 TTGGTGGGCCCACCAGGATTCGAACCTGAAACCAAGGGATTATGAGTCCCCTGCTCTAAC 5979
Query 74668 CAATTGAGCTATAGGGCC 74685
| |||||||||||| ||
Sbjct 5978 C-GTTGAGCTATAGGCCC 5962
>seq14151
Length=17150
Score = 82.4 bits (90), Expect = 8e-11
Identities = 67/80 (84%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 74606 ATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTA 74665
|||||||| ||| |||||||||||||| |||||||||| ||||||| || ||||||
Sbjct 466 ATTTGGTGGGCCCGGCAGGACTCGAACCCGCAACCTAGCCGTTATGAGCGGCCAGCTCTA 525
Query 74666 ACCAATTGAGCTATAGGGCC 74685
||| ||||||||| ||| ||
Sbjct 526 ACC-ATTGAGCTACAGGCCC 544
>seq8237
Length=506431
Score = 82.4 bits (90), Expect = 8e-11
Identities = 75/92 (82%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 76069 TGGAGGAAGCGGTGGGATTCGAACCCACGGACCGTATCACTACGGCCTCCGGTTTTCAAG 76128
||| |||||||||| ||||||||| |||||| | |||| | | |||| ||||||||
Sbjct 133546 TGGCGGAAGCGGTGAGATTCGAACTCACGGAG-GACTCACACCCTCGTCCG-TTTTCAAG 133603
Query 76129 ACCGGTGTAATAAGCCGCTCTACCACGCTTCC 76160
||||||| | ||| ||||||| ||||||||||
Sbjct 133604 ACCGGTGCATTAAACCGCTCTGCCACGCTTCC 133635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554250849563040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |