Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq9795 80.6 8e-11 >seq9795 Length=220374 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/165 (71%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 31460 AATTCCATGCCATCGAACTGTGGGTTCTCGTTGATGATCCGAGCCCAGCCATCCACGCCA 31519 || |||||||||||||| || || | ||||| ||||| || | ||||||||| || ||| Sbjct 198542 AACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACCA 198483 Query 31520 ACAACTGGCACGATGCCGTTGTTCTTGTCGGGGAATGCGTACAACTCCTTGGTGAAGGGG 31579 ||||| || || ||||| | ||| || || | ||||| | ||| || ||||| Sbjct 198482 ACAACCGGAACAATGCC---GCCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGGA 198426 Query 31580 TTCAGTTTGTACTGGTCTGCCACGATCAGCAGGGCGACCATCTGC 31624 || | | || | || ||| || |||| ||| ||| ||| ||| Sbjct 198425 TTTAATCCATATTCGTTTGCAACAATCATCAGAGCGGACATTTGC 198381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145612356122096