Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023580.1 Length=57775 Score E Sequences producing significant alignments: (Bits) Value seq6089 219 2e-52 seq12569 214 7e-51 >seq6089 Length=13452 Score = 219 bits (242), Expect = 2e-52 Identities = 497/740 (67%), Gaps = 33/740 (4%) Strand=Plus/Minus Query 43858 TGGGCAT-CAAGTCGGCCCCGATGACGTTCACCCGATGCTGCTGCCACACCAGCGTGACC 43916 ||||||| | |||| | || ||||||| || ||||| ||| | |||||| || | Sbjct 4820 TGGGCATGCCGGTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGC 4761 Query 43917 TGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCA 43976 |||| || ||||| |||| || ||||| || ||||||||||| |||||||| |||||| Sbjct 4760 TGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCA 4701 Query 43977 AGACCGTGATGCAGCTGGAGATCGTGCGATTG--TCGCTAGCCAAGCATGGCGGTGGTAA 44034 || | || ||||||||||||||| |||| | | || ||| ||| ||||| | | Sbjct 4700 AGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGCTGGGCGGCCGGCA 4643 Query 44035 AGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCT 44094 |||||||| |||||||| |||| |||||| ||| | |||||| | ||||| Sbjct 4642 G---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCT 4586 Query 44095 AGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTC----------------GGTG 44138 ||| | || | ||| | ||| |||| | ||| || || Sbjct 4585 GGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCC 4526 Query 44139 GTGACGGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 44196 | | || | || | || ||||||||||| ||||||||| || ||| | |||| ||| Sbjct 4525 GAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGAC 4466 Query 44197 ACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGTCTTT-CGGGTCCA 44252 | |||| |||| || || || || || | |||| ||||| || ||| ||| Sbjct 4465 GCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCA 4407 Query 44253 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGG 44312 |||||| || |||| | ||||||||||| | | || || ||||| |||| Sbjct 4406 AGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGG 4347 Query 44313 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGA 44372 |||||||||| |||||| || | |||||| | ||| || | | || | | | | Sbjct 4346 CCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCA 4287 Query 44373 TGGACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGCACCAAGGCGAATAACC 44432 |||| |||| ||| || ||| ||| ||||| ||||| ||||| | | | Sbjct 4286 TGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAAC 4227 Query 44433 TAACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGT 44492 | ||| || | || || || || ||||||||||| ||| | |||| ||||||||| | Sbjct 4226 TGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCAT 4167 Query 44493 TCGTGCAATCCCC-AGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCCGTTG 44551 |||| || || ||| || ||||||| | || | |||||||||||||| | || Sbjct 4166 TCGTCCAGCGGCCGAGC-GATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTG 4108 Query 44552 GATGTGCAGTGGCATGAGGT 44571 || |||| ||||||||||| Sbjct 4107 GACGTGCGCTGGCATGAGGT 4088 Score = 107 bits (118), Expect = 7e-19 Identities = 306/466 (66%), Gaps = 26/466 (6%) Strand=Plus/Minus Query 45295 CCTGATCGTCACCAGTATTCCGTTCTCCAATCACTACGAATACACCCCGTCCTACAACGA 45354 |||||| |||||||| | || || || || || ||||| | ||| ||| || || Sbjct 3376 CCTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGA 3317 Query 45355 CTTCGGTCACACCGACGACAACGCGCATTTCTGGGCGCAAATGGACTACCTCACACCGCA 45414 ||||| || |||||||| || ||||||| ||||| |||||||| || || || | Sbjct 3316 TTTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGA 3257 Query 45415 ACTGTTGCGCATCCTTGCGCCCGGGCGGATCTACGCCTGCC-----ACGTCAAAGACCGC 45469 ||| ||||| || |||| |||||| | |||||| | | || || || ||| Sbjct 3256 GCTGCTGCGCGTC-TTGCAGCCGGGCCGG----CGCCTGGCGGTGCATGTGAAGGATCGC 3202 Query 45470 ATCTTGTTC----GGCAATGTCACCGGCGCTGGCGTGCCCACCGTGTCACCATTTCA--- 45522 | ||||| || ||| || || ||| | | ||| | || || || Sbjct 3201 GT--TGTTCCGTCGGGCATG--ACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGC 3146 Query 45523 -CGCCGAAGCGATCTTCCACGGCCGCAAACACGGCTTTGACTACCTCGGCATGATCACCG 45581 ||| | | ||||| | || | ||| ||||| | ||| || |||||| | || Sbjct 3145 GCGCTGCATCGATCATTATCGCCGGCAT----GGCTTCGCCTATCTGGGCATGGTGACGA 3090 Query 45582 TTGTCACCGATGTGGTACGGGAAAACAACCAGACGTACCGGTTGGGTTGGTCCGAGCAGT 45641 | ||||||||||| || || || || || || ||| |||| ||| ||||||||| Sbjct 3089 TCGTCACCGATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGT 3030 Query 45642 GCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAAC 45701 |||| || |||| | |||||||| ||| || ||||| | || ||||||| || | Sbjct 3029 GCAAGGATGCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGC 2970 Query 45702 CGCAGACAGACAGATCGAAGGGATACGCCGACACCCCCGTCACCAA 45747 ||| ||| ||| | || || || ||||| || |||||||| Sbjct 2969 CGCCGACCGACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 >seq12569 Length=80069 Score = 214 bits (236), Expect = 7e-51 Identities = 355/510 (70%), Gaps = 12/510 (2%) Strand=Plus/Minus Query 45290 GTGGACCTGATCGTCACCAGTATTCCGTTCTCCAATCACTACGAATACACCCCGTCCTAC 45349 |||| ||||||||||||| || |||||||| | || ||||| || | ||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 45350 AACGACTTCGGTCACACCGACGACAACGCGCATTTCTGGGCGCAAATGGACTACCTCACA 45409 ||| ||||| ||||||||||||||||| ||||||||| || ||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 45410 CCGCAACTGTTGCGCATCCTTGCGCCCGGGCGGATCTACGCCTGCCACGTCAAAGACCGC 45469 ||| | ||| ||||| | || ||||| || ||| | |||| |||||| || ||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 45470 ATCTTGTTCGGCAATGTCACCGGCGCTGGCGTGCCCACCGTGTCACCATTTCACGCCGAA 45529 ||| || || | | |||||| ||| | | ||||| | || || ||| || Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTT---CGCGGA- 62463 Query 45530 GCGATCTTCC------ACGGCCGCAAACACGGCTTTGACTACCTCGGCATGATCACCGTT 45583 ||| || || | |||||| |||||| | |||||||||| | ||| Sbjct 62462 -CGA-CTGCCGGGCGTGCTTCCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 45584 GTCACCGATGTGGTACGGGAAAACAACCAGACGTACCGGTTGGGTTGGTCCGAGCAGTGC 45643 | ||||| || || || || ||||||||||| || ||| |||| ||| |||||||||| Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345 Query 45644 AAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCG 45703 || |||| | ||||||| ||| |||||| | || |||||||||| || ||| Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285 Query 45704 CAGACAGACAGATCGAAGGGATACGCCGACACCCCCGTCACCAAATCCAAGGACGACTAC 45763 | | ||| || || || ||||||||| || || | || |||||| |||| Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGCTAC 62225 Query 45764 ACCCGTGCCCGCTGGCAGGTGGACGCGCAC 45793 | ||| || ||||||||| | ||||||||| Sbjct 62224 AGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 152 bits (168), Expect = 2e-32 Identities = 436/655 (67%), Gaps = 19/655 (3%) Strand=Plus/Minus Query 43904 CACCAGCGTGACCTGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 43963 || ||||| | | |||| ||||||||||| || ||| || | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013 Query 43964 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG-ATTGT-CGCTAGCCAAGC 44021 ||||| |||| || | ||| | ||| ||||||| | ||| || | ||| || | | Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATGCGCGAG---ATC 63956 Query 44022 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 44081 ||| || | || |||||||| || ||||| || |||||| |||||| | | Sbjct 63955 TC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGG 63898 Query 44082 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGTGGTG 44141 ||||| ||||| ||| | ||||||| |||| || | || || | | | | Sbjct 63897 ACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATC 63838 Query 44142 ACGGAA---TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACAC 44198 ||| |||| || |||||||| |||| || || ||||| ||| | ||||| | | Sbjct 63837 CCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-C 63779 Query 44199 TGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGGGTCCAAG 44254 |||| | ||| || || || || ||||||||||| |||| | ||| ||| |||||| Sbjct 63778 TGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAG 63719 Query 44255 ACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCC 44314 |||| | |||| | ||||||||| ||| |||| || | |||||| |||||| Sbjct 63718 ACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCC 63659 Query 44315 ACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATG 44374 |||||||| || ||| | || |||||| | ||| ||| | || || |||||| Sbjct 63658 ACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATG 63599 Query 44375 GACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGC-ACCAAGGCGAATAACCT 44433 || ||| ||| || ||| |||| ||| |||||| | || | ||| ||| Sbjct 63598 GATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGC-CCT 63540 Query 44434 AACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGTT 44493 ||||| |||| || ||||||||||| |||||||| ||| | | ||||| ||| Sbjct 63539 CACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTT 63480 Query 44494 CGTGCA-ATCCCCAGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCC 44547 ||| || || ||| || || || | || | |||||| ||||||||||| Sbjct 63479 CGTCCAGCGGCCGAGC-GATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426 Score = 104 bits (114), Expect = 9e-18 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46065 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 46124 ||| |||| |||||||||||| ||||| ||||| ||||||||||||| | | || Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861 Query 46125 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 46184 | || ||||| |||||||||| ||||||||||| ||| |||||||| | || || Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801 Query 46185 TGAAACTCGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 46244 | || | ||| || |||| | | ||||||||| || | ||||| |||| | || Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741 Query 46245 TCAAG 46249 | ||| Sbjct 61740 TGAAG 61736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184725360463646