Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023580.1
Length=57775
Score E
Sequences producing significant alignments: (Bits) Value
seq6089 219 2e-52
seq12569 214 7e-51
>seq6089
Length=13452
Score = 219 bits (242), Expect = 2e-52
Identities = 497/740 (67%), Gaps = 33/740 (4%)
Strand=Plus/Minus
Query 43858 TGGGCAT-CAAGTCGGCCCCGATGACGTTCACCCGATGCTGCTGCCACACCAGCGTGACC 43916
||||||| | |||| | || ||||||| || ||||| ||| | |||||| || |
Sbjct 4820 TGGGCATGCCGGTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGC 4761
Query 43917 TGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCA 43976
|||| || ||||| |||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct 4760 TGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCA 4701
Query 43977 AGACCGTGATGCAGCTGGAGATCGTGCGATTG--TCGCTAGCCAAGCATGGCGGTGGTAA 44034
|| | || ||||||||||||||| |||| | | || ||| ||| ||||| | |
Sbjct 4700 AGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGCTGGGCGGCCGGCA 4643
Query 44035 AGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCT 44094
|||||||| |||||||| |||| |||||| ||| | |||||| | |||||
Sbjct 4642 G---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCT 4586
Query 44095 AGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTC----------------GGTG 44138
||| | || | ||| | ||| |||| | ||| || ||
Sbjct 4585 GGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCC 4526
Query 44139 GTGACGGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 44196
| | || | || | || ||||||||||| ||||||||| || ||| | |||| |||
Sbjct 4525 GAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGAC 4466
Query 44197 ACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGTCTTT-CGGGTCCA 44252
| |||| |||| || || || || || | |||| ||||| || ||| |||
Sbjct 4465 GCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCA 4407
Query 44253 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGG 44312
|||||| || |||| | ||||||||||| | | || || ||||| ||||
Sbjct 4406 AGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGG 4347
Query 44313 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGA 44372
|||||||||| |||||| || | |||||| | ||| || | | || | | | |
Sbjct 4346 CCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCA 4287
Query 44373 TGGACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGCACCAAGGCGAATAACC 44432
|||| |||| ||| || ||| ||| ||||| ||||| ||||| | | |
Sbjct 4286 TGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAAC 4227
Query 44433 TAACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGT 44492
| ||| || | || || || || ||||||||||| ||| | |||| ||||||||| |
Sbjct 4226 TGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCAT 4167
Query 44493 TCGTGCAATCCCC-AGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCCGTTG 44551
|||| || || ||| || ||||||| | || | |||||||||||||| | ||
Sbjct 4166 TCGTCCAGCGGCCGAGC-GATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTG 4108
Query 44552 GATGTGCAGTGGCATGAGGT 44571
|| |||| |||||||||||
Sbjct 4107 GACGTGCGCTGGCATGAGGT 4088
Score = 107 bits (118), Expect = 7e-19
Identities = 306/466 (66%), Gaps = 26/466 (6%)
Strand=Plus/Minus
Query 45295 CCTGATCGTCACCAGTATTCCGTTCTCCAATCACTACGAATACACCCCGTCCTACAACGA 45354
|||||| |||||||| | || || || || || ||||| | ||| ||| || ||
Sbjct 3376 CCTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGA 3317
Query 45355 CTTCGGTCACACCGACGACAACGCGCATTTCTGGGCGCAAATGGACTACCTCACACCGCA 45414
||||| || |||||||| || ||||||| ||||| |||||||| || || || |
Sbjct 3316 TTTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGA 3257
Query 45415 ACTGTTGCGCATCCTTGCGCCCGGGCGGATCTACGCCTGCC-----ACGTCAAAGACCGC 45469
||| ||||| || |||| |||||| | |||||| | | || || || |||
Sbjct 3256 GCTGCTGCGCGTC-TTGCAGCCGGGCCGG----CGCCTGGCGGTGCATGTGAAGGATCGC 3202
Query 45470 ATCTTGTTC----GGCAATGTCACCGGCGCTGGCGTGCCCACCGTGTCACCATTTCA--- 45522
| ||||| || ||| || || ||| | | ||| | || || ||
Sbjct 3201 GT--TGTTCCGTCGGGCATG--ACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGC 3146
Query 45523 -CGCCGAAGCGATCTTCCACGGCCGCAAACACGGCTTTGACTACCTCGGCATGATCACCG 45581
||| | | ||||| | || | ||| ||||| | ||| || |||||| | ||
Sbjct 3145 GCGCTGCATCGATCATTATCGCCGGCAT----GGCTTCGCCTATCTGGGCATGGTGACGA 3090
Query 45582 TTGTCACCGATGTGGTACGGGAAAACAACCAGACGTACCGGTTGGGTTGGTCCGAGCAGT 45641
| ||||||||||| || || || || || || ||| |||| ||| |||||||||
Sbjct 3089 TCGTCACCGATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGT 3030
Query 45642 GCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAAC 45701
|||| || |||| | |||||||| ||| || ||||| | || ||||||| || |
Sbjct 3029 GCAAGGATGCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGC 2970
Query 45702 CGCAGACAGACAGATCGAAGGGATACGCCGACACCCCCGTCACCAA 45747
||| ||| ||| | || || || ||||| || ||||||||
Sbjct 2969 CGCCGACCGACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
>seq12569
Length=80069
Score = 214 bits (236), Expect = 7e-51
Identities = 355/510 (70%), Gaps = 12/510 (2%)
Strand=Plus/Minus
Query 45290 GTGGACCTGATCGTCACCAGTATTCCGTTCTCCAATCACTACGAATACACCCCGTCCTAC 45349
|||| ||||||||||||| || |||||||| | || ||||| || | ||| ||||
Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639
Query 45350 AACGACTTCGGTCACACCGACGACAACGCGCATTTCTGGGCGCAAATGGACTACCTCACA 45409
||| ||||| ||||||||||||||||| ||||||||| || ||||||| ||| |
Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579
Query 45410 CCGCAACTGTTGCGCATCCTTGCGCCCGGGCGGATCTACGCCTGCCACGTCAAAGACCGC 45469
||| | ||| ||||| | || ||||| || ||| | |||| |||||| || |||||
Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519
Query 45470 ATCTTGTTCGGCAATGTCACCGGCGCTGGCGTGCCCACCGTGTCACCATTTCACGCCGAA 45529
||| || || | | |||||| ||| | | ||||| | || || ||| ||
Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTT---CGCGGA- 62463
Query 45530 GCGATCTTCC------ACGGCCGCAAACACGGCTTTGACTACCTCGGCATGATCACCGTT 45583
||| || || | |||||| |||||| | |||||||||| | |||
Sbjct 62462 -CGA-CTGCCGGGCGTGCTTCCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405
Query 45584 GTCACCGATGTGGTACGGGAAAACAACCAGACGTACCGGTTGGGTTGGTCCGAGCAGTGC 45643
| ||||| || || || || ||||||||||| || ||| |||| ||| ||||||||||
Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345
Query 45644 AAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCG 45703
|| |||| | ||||||| ||| |||||| | || |||||||||| || |||
Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285
Query 45704 CAGACAGACAGATCGAAGGGATACGCCGACACCCCCGTCACCAAATCCAAGGACGACTAC 45763
| | ||| || || || ||||||||| || || | || |||||| ||||
Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGCTAC 62225
Query 45764 ACCCGTGCCCGCTGGCAGGTGGACGCGCAC 45793
| ||| || ||||||||| | |||||||||
Sbjct 62224 AGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 152 bits (168), Expect = 2e-32
Identities = 436/655 (67%), Gaps = 19/655 (3%)
Strand=Plus/Minus
Query 43904 CACCAGCGTGACCTGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 43963
|| ||||| | | |||| ||||||||||| || ||| || | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013
Query 43964 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG-ATTGT-CGCTAGCCAAGC 44021
||||| |||| || | ||| | ||| ||||||| | ||| || | ||| || | |
Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATGCGCGAG---ATC 63956
Query 44022 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 44081
||| || | || |||||||| || ||||| || |||||| |||||| | |
Sbjct 63955 TC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGG 63898
Query 44082 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGTGGTG 44141
||||| ||||| ||| | ||||||| |||| || | || || | | | |
Sbjct 63897 ACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATC 63838
Query 44142 ACGGAA---TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACAC 44198
||| |||| || |||||||| |||| || || ||||| ||| | ||||| | |
Sbjct 63837 CCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-C 63779
Query 44199 TGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGGGTCCAAG 44254
|||| | ||| || || || || ||||||||||| |||| | ||| ||| ||||||
Sbjct 63778 TGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAG 63719
Query 44255 ACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCC 44314
|||| | |||| | ||||||||| ||| |||| || | |||||| ||||||
Sbjct 63718 ACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCC 63659
Query 44315 ACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATG 44374
|||||||| || ||| | || |||||| | ||| ||| | || || ||||||
Sbjct 63658 ACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATG 63599
Query 44375 GACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGC-ACCAAGGCGAATAACCT 44433
|| ||| ||| || ||| |||| ||| |||||| | || | ||| |||
Sbjct 63598 GATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGC-CCT 63540
Query 44434 AACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGTT 44493
||||| |||| || ||||||||||| |||||||| ||| | | ||||| |||
Sbjct 63539 CACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTT 63480
Query 44494 CGTGCA-ATCCCCAGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCC 44547
||| || || ||| || || || | || | |||||| |||||||||||
Sbjct 63479 CGTCCAGCGGCCGAGC-GATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426
Score = 104 bits (114), Expect = 9e-18
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 46065 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 46124
||| |||| |||||||||||| ||||| ||||| ||||||||||||| | | ||
Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861
Query 46125 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 46184
| || ||||| |||||||||| ||||||||||| ||| |||||||| | || ||
Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801
Query 46185 TGAAACTCGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 46244
| || | ||| || |||| | | ||||||||| || | ||||| |||| | ||
Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741
Query 46245 TCAAG 46249
| |||
Sbjct 61740 TGAAG 61736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 184725360463646
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