Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq11739 181 5e-41 >seq11739 Length=237542 Score = 181 bits (200), Expect = 5e-41 Identities = 216/293 (74%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 37819 TGGCTTTGATCAGATTGATTGGGTTATTAATGAAATTAAAACTAACCCTACATCACGCCG 37878 ||| ||||| || || |||| | | |||||||| || || || || | ||||| || Sbjct 9110 TGGTTTTGACCAAATCAGTTGGTTGGTCAATGAAATCAAGACCAATCCAAACTCACGTCG 9051 Query 37879 TCTAATTGTCAATGGATGGAATCCACATGAAGTAGATAAGGCAGCATTGCCACCTTGTCA 37938 | | ||||| ||| ||||| ||| |||||| || ||| | || || || || || || Sbjct 9050 TTTGATTGTGTCTGGCTGGAACCCAAATGAAGCAGGTAAAGTTGCCTTACCGCCATGCCA 8991 Query 37939 TACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATATCAACGTAG 37998 || || ||||| || ||||| || ||||||| | || || | ||||||||||| Sbjct 8990 CACTTTATTCCAATTTTTTGTTCAGGATGGAAAGTTGTCTTGCCAACTTTATCAACGTAG 8931 Query 37999 TGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTATGCGTTGCTTACACATAT 38058 ||| ||| | |||||||| || |||||||||||||| |||||||| | || || ||||| Sbjct 8930 TGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTACTGACTCATAT 8871 Query 38059 CGTAGCTGCAGAATGTGGATTAGAAGTTGGTGAATTTGTCTGGACTGGTGGTG 38111 || ||| || ||||| |||| || ||||| |||||||||||||| |||| Sbjct 8870 GGTTGCTCAAGTTTGTGGTTTAGGCGTAGGTGATTTTGTCTGGACTGGCGGTG 8818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248763935585347