Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq9925 91.5 2e-13
seq9956 86.0 8e-12
seq8050 86.0 8e-12
seq9676 84.2 3e-11
seq11812 82.4 9e-11
seq7835 82.4 9e-11
>seq9925
Length=47282
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556
||||||| ||||||||| |||||||||| ||||||||||| || |||||||||||||
Sbjct 28034 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 27975
Query 19557 TCCCAGGTGGAGGAG 19571
||||||| ||||||
Sbjct 27974 GCCCAGGTTGAGGAG 27960
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556
||||||| ||||||||| |||||||||| ||||||||||| || |||||||||||||
Sbjct 28155 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 28096
Query 19557 TCCCAGGTGGAGGAG 19571
||||||| ||||||
Sbjct 28095 GCCCAGGTTGAGGAG 28081
Score = 89.7 bits (98), Expect = 6e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 19498 TTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAT 19557
|||||| ||||||||| |||||||||| ||||||||||| || |||||||||||||
Sbjct 28282 TTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 28223
Query 19558 CCCAGGTGGAGGAG 19571
||||||| ||||||
Sbjct 28222 CCCAGGTTGAGGAG 28209
>seq9956
Length=123604
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556
||||||| ||||||||| |||||||| | ||||||||||| | ||||||||||||||
Sbjct 116395 ATTCCTCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGTGTCCCTGGTTCGA 116454
Query 19557 TCCCAGGTGGAGGAG 19571
||||||| ||||||
Sbjct 116455 GCCCAGGTCGAGGAG 116469
>seq8050
Length=287393
Score = 86.0 bits (94), Expect = 8e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 18003 TGGCGGAATCGGTAGACGCATCAGACTTAAAATCTGCTGACCACTGGTCGTGGGAGTTCA 18062
||||| |||||||||||||| |||||||||||||||| ||||| ||||| || | |||||
Sbjct 202164 TGGCGAAATCGGTAGACGCAGCAGACTTAAAATCTGCCGACCATTGGTCTTGCGGGTTCA 202223
Query 18063 AGTCTCCCTATTCGCAC 18079
|||| | | | |||||
Sbjct 202224 AGTCCCGCCGTCCGCAC 202240
>seq9676
Length=343241
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 152586 ATGGCGGAATTGGTAGACGCGCTGGTTTTAGGTACCAGTGTCTTATGACGTGGAGGTTCA 152645
||||||||||||||||||||||| |||| |||||| ||| || | || ||||||||||
Sbjct 339564 ATGGCGGAATTGGTAGACGCGCTAGTTTCAGGTACTAGTATCGAAAGATGTGGAGGTTCG 339505
Query 152646 AGTCCTCTT 152654
|||||||||
Sbjct 339504 AGTCCTCTT 339496
>seq11812
Length=28321
Score = 82.4 bits (90), Expect = 9e-11
Identities = 60/69 (87%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 152587 TGGCGGAATTGGTAGACGCGCTGGTTTTAGGTACCAGTGTCTTA--TGACGTGGAGGTTC 152644
|||||||||||||||||||||||| || |||| |||||| |||| | |||||||||||
Sbjct 13030 TGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCCGTGGAGGTTC 13089
Query 152645 AAGTCCTCT 152653
||||||||
Sbjct 13090 GAGTCCTCT 13098
>seq7835
Length=204203
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556
|||| || ||||||||| |||||||||| ||||||||||| | |||||||||||||
Sbjct 26110 ATTCTTCCATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 26051
Query 19557 TCCCAGGTGGAGGAG 19571
|||||||||| |||
Sbjct 26050 GCCCAGGTGGAAGAG 26036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605553190720440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |