Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq9925 91.5 2e-13 seq9956 86.0 8e-12 seq8050 86.0 8e-12 seq9676 84.2 3e-11 seq11812 82.4 9e-11 seq7835 82.4 9e-11 >seq9925 Length=47282 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556 ||||||| ||||||||| |||||||||| ||||||||||| || ||||||||||||| Sbjct 28034 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 27975 Query 19557 TCCCAGGTGGAGGAG 19571 ||||||| |||||| Sbjct 27974 GCCCAGGTTGAGGAG 27960 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556 ||||||| ||||||||| |||||||||| ||||||||||| || ||||||||||||| Sbjct 28155 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 28096 Query 19557 TCCCAGGTGGAGGAG 19571 ||||||| |||||| Sbjct 28095 GCCCAGGTTGAGGAG 28081 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19498 TTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAT 19557 |||||| ||||||||| |||||||||| ||||||||||| || ||||||||||||| Sbjct 28282 TTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 28223 Query 19558 CCCAGGTGGAGGAG 19571 ||||||| |||||| Sbjct 28222 CCCAGGTTGAGGAG 28209 >seq9956 Length=123604 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556 ||||||| ||||||||| |||||||| | ||||||||||| | |||||||||||||| Sbjct 116395 ATTCCTCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGTGTCCCTGGTTCGA 116454 Query 19557 TCCCAGGTGGAGGAG 19571 ||||||| |||||| Sbjct 116455 GCCCAGGTCGAGGAG 116469 >seq8050 Length=287393 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 18003 TGGCGGAATCGGTAGACGCATCAGACTTAAAATCTGCTGACCACTGGTCGTGGGAGTTCA 18062 ||||| |||||||||||||| |||||||||||||||| ||||| ||||| || | ||||| Sbjct 202164 TGGCGAAATCGGTAGACGCAGCAGACTTAAAATCTGCCGACCATTGGTCTTGCGGGTTCA 202223 Query 18063 AGTCTCCCTATTCGCAC 18079 |||| | | | ||||| Sbjct 202224 AGTCCCGCCGTCCGCAC 202240 >seq9676 Length=343241 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 152586 ATGGCGGAATTGGTAGACGCGCTGGTTTTAGGTACCAGTGTCTTATGACGTGGAGGTTCA 152645 ||||||||||||||||||||||| |||| |||||| ||| || | || |||||||||| Sbjct 339564 ATGGCGGAATTGGTAGACGCGCTAGTTTCAGGTACTAGTATCGAAAGATGTGGAGGTTCG 339505 Query 152646 AGTCCTCTT 152654 ||||||||| Sbjct 339504 AGTCCTCTT 339496 >seq11812 Length=28321 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/69 (87%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 152587 TGGCGGAATTGGTAGACGCGCTGGTTTTAGGTACCAGTGTCTTA--TGACGTGGAGGTTC 152644 |||||||||||||||||||||||| || |||| |||||| |||| | ||||||||||| Sbjct 13030 TGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCCGTGGAGGTTC 13089 Query 152645 AAGTCCTCT 152653 |||||||| Sbjct 13090 GAGTCCTCT 13098 >seq7835 Length=204203 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556 |||| || ||||||||| |||||||||| ||||||||||| | ||||||||||||| Sbjct 26110 ATTCTTCCATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 26051 Query 19557 TCCCAGGTGGAGGAG 19571 |||||||||| ||| Sbjct 26050 GCCCAGGTGGAAGAG 26036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605553190720440