Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023612.1 Length=39078 Score E Sequences producing significant alignments: (Bits) Value seq6415 89.7 1e-13 >seq6415 Length=247467 Score = 89.7 bits (98), Expect = 1e-13 Identities = 207/310 (67%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 35655 AACCCAAACAGCCGCCGCTTAATGGTGAACGCTTGGAACACCGGAGAATTACATAAAATG 35714 || |||| |||||||||| || || | || |||||| ||| || | | | ||| Sbjct 53275 AATCCAAGCAGCCGCCGCCACATCGTCACGGCCTGGAACCCCGCCGATGTCGACGACATG 53334 Query 35715 GCGCTGCCGCCTTGTCATTTTGCCTTT--CAATTCAACGTCACCGATGGAAAATTAAATT 35772 || |||||||| || || | |||| | || ||| |||| | || ||||| | | | Sbjct 53335 GCCCTGCCGCCCTGCCACT--GCCTGTTCCAGTTCTTCGTCGCGGACGGAAAGCTGAGCT 53392 Query 35773 GTATGGTTTACCAACGCAGCGGAGATATGTTTTTAGGGGTACCGTTTAACATCGCCGGTT 35832 | | | || |||||||||| || |||| |||||||| ||||| ||||||||| | Sbjct 53393 GCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCCT 53452 Query 35833 ATGCAGCTATAACCATGATGATTGCCCAATTAACCAATTTAGAGCCGGGCGAGCTTGTCC 35892 | || | ||| ||||| | ||| | | | | |||||||||||| | |||| Sbjct 53453 ACGCCCTGCTGACCCTGATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGCGAGTTCGTCC 53512 Query 35893 ATGCTATCGCAGACGCGCACATTTATTTAAATCACATCGAGCAAGTAAAGGAACAATTAA 35952 | | ||| ||||| ||| | ||| | || ||| |||| || | ||||| | | Sbjct 53513 ACACCTTCGGCGACGCCCACCTCTATCTGAACCACCTCGACCAGGCCCGCGAACAGCTGA 53572 Query 35953 GCCGCGAGCC 35962 ||||||||| Sbjct 53573 CCCGCGAGCC 53582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124905659672320