Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq8849 93.3 6e-14 seq9956 87.8 3e-12 >seq8849 Length=66482 Score = 93.3 bits (102), Expect = 6e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 97394 AGAAACTGGTAGCCATGGGCAGGATTGAACTGCCGACCCCACCCTTATCAGGGGTGTGCT 97453 ||| | |||| ||||||||||||| |||||||||||| | |||||| || ||| ||||| Sbjct 20734 AGAGAATGGTGCCCATGGGCAGGATCGAACTGCCGACCTCTCCCTTACCAAGGGAGTGCT 20793 Query 97454 CTACCACTGAGCTACATGG 97472 |||||||||||| |||||| Sbjct 20794 CTACCACTGAGCCACATGG 20812 >seq9956 Length=123604 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 93705 ATTTGGCGGAAGCGATCCGATTCGAACGGATGGACGGGGTTAACCGCCGACACTTTTCAA 93764 |||||||||||| | | ||||||||| | ||| || || |||| ||||| ||||||| Sbjct 93285 ATTTGGCGGAAGAGGTGAGATTCGAACTCACGGAGGGCGTGAACCCTCGACAGTTTTCAA 93344 Query 93765 GAGTGTTGCAATAAGCCGGACTCTGCCACGCTTCCAAATT 93804 || ||| ||| ||| ||| ||||||||| |||||||||| Sbjct 93345 GACTGTAGCATTAAACCG--CTCTGCCACTCTTCCAAATT 93382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710157496560240