Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023690.1 Length=110569 Score E Sequences producing significant alignments: (Bits) Value seq858 100 2e-16 seq9968 98.7 7e-16 seq9425 89.7 4e-13 seq11347 84.2 2e-11 >seq858 Length=60328 Score = 100 bits (110), Expect = 2e-16 Identities = 131/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 97125 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97184 ||||| ||| | ||||| | ||| |||| || || || ||||| ||||| ||||| || Sbjct 50397 CGGCAGGTTCGCCTTGATGACGCCGGTGATGACGTCGACCGAGGGACGCTGGGTCGCGAG 50338 Query 97185 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97244 || | || || ||||| || ||||||||||| || | || || | |||||| Sbjct 50337 GATCAAGTGGATGCCGGCAGCACGCGCCTTCTGCGCCAGACGCTGGATCAGGAACTCGAC 50278 Query 97245 TTCTTTCTTGTAGCCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97301 ||| |||| ||||| |||||||||||| || || ||||||||||| |||||||| Sbjct 50277 TTC---CTTG--CCCGCCGTCATCATGAGGTCGGCCAGCTCGTCGACCACCACCACGAT 50224 >seq9968 Length=31652 Score = 98.7 bits (108), Expect = 7e-16 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 97131 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97190 ||||| ||||| ||||| |||| || |||||| ||| ||||| || ||||||| || Sbjct 27731 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTGGCCAGGATCAG 27672 Query 97191 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97250 || || ||||| ||||| ||||||||||| | ||| | || |||||| || || Sbjct 27671 GTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCCTCGA--TC-TT 27615 Query 97251 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGT 97303 |||| | | ||||||| ||||| || || ||||||| || | ||||||| Sbjct 27614 CTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACGATGT 27562 >seq9425 Length=520298 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/183 (71%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 97125 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97184 ||| | ||||| ||||| ||| |||| || || || || || ||||||||||||| Sbjct 178367 CGGGAAGTTGGCCTTGATCGTGCCGGTGATGACGTCGACCGACGGGCGCTGCGTCGCCAT 178426 Query 97185 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97244 || || || || ||||| ||||||||| ||||||||| ||| | | | |||||| Sbjct 178427 GATGACGTGGATGCCGGCCGCGCGCGCCATCTGGGCGAGGCGCTGGACGGCGCCCTCGAT 178486 Query 97245 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 97304 || |||| | | ||||||| ||||| || | ||||||| | || |||||||| Sbjct 178487 ATC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 178543 Query 97305 GGG 97307 || Sbjct 178544 AGG 178546 >seq11347 Length=47098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 97131 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97190 ||||| ||||| ||| |||| || || || ||||||||||| || |||| || || Sbjct 25164 GTTGGCCTTGATGGTGCCGGTGATGACGTCGACCGAGGGCCGCTGGGTGGCCATGATCAG 25105 Query 97191 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97250 || || ||||| ||||| ||| ||||||| | ||| | | | |||||| || Sbjct 25104 GTGGATGCCGGCGGCGCGGGCCATCTGGGCCAGGCGCTGCACGGCGCCCTCGATGTC--- 25048 Query 97251 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGG 97307 |||| | || ||||||| ||||| || | ||||||| || ||||| | ||||| Sbjct 25047 CTTGCCGGCGACCATCATCAGGTCGGCCACCTCGTCGATGACCACCACCAGATAGGG 24991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353631085620470