Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023690.1
Length=110569
Score E
Sequences producing significant alignments: (Bits) Value
seq858 100 2e-16
seq9968 98.7 7e-16
seq9425 89.7 4e-13
seq11347 84.2 2e-11
>seq858
Length=60328
Score = 100 bits (110), Expect = 2e-16
Identities = 131/179 (73%), Gaps = 7/179 (4%)
Strand=Plus/Minus
Query 97125 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97184
||||| ||| | ||||| | ||| |||| || || || ||||| ||||| ||||| ||
Sbjct 50397 CGGCAGGTTCGCCTTGATGACGCCGGTGATGACGTCGACCGAGGGACGCTGGGTCGCGAG 50338
Query 97185 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97244
|| | || || ||||| || ||||||||||| || | || || | ||||||
Sbjct 50337 GATCAAGTGGATGCCGGCAGCACGCGCCTTCTGCGCCAGACGCTGGATCAGGAACTCGAC 50278
Query 97245 TTCTTTCTTGTAGCCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97301
||| |||| ||||| |||||||||||| || || ||||||||||| ||||||||
Sbjct 50277 TTC---CTTG--CCCGCCGTCATCATGAGGTCGGCCAGCTCGTCGACCACCACCACGAT 50224
>seq9968
Length=31652
Score = 98.7 bits (108), Expect = 7e-16
Identities = 127/173 (73%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 97131 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97190
||||| ||||| ||||| |||| || |||||| ||| ||||| || ||||||| ||
Sbjct 27731 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTGGCCAGGATCAG 27672
Query 97191 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97250
|| || ||||| ||||| ||||||||||| | ||| | || |||||| || ||
Sbjct 27671 GTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCCTCGA--TC-TT 27615
Query 97251 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGT 97303
|||| | | ||||||| ||||| || || ||||||| || | |||||||
Sbjct 27614 CTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACGATGT 27562
>seq9425
Length=520298
Score = 89.7 bits (98), Expect = 4e-13
Identities = 130/183 (71%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 97125 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97184
||| | ||||| ||||| ||| |||| || || || || || |||||||||||||
Sbjct 178367 CGGGAAGTTGGCCTTGATCGTGCCGGTGATGACGTCGACCGACGGGCGCTGCGTCGCCAT 178426
Query 97185 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97244
|| || || || ||||| ||||||||| ||||||||| ||| | | | ||||||
Sbjct 178427 GATGACGTGGATGCCGGCCGCGCGCGCCATCTGGGCGAGGCGCTGGACGGCGCCCTCGAT 178486
Query 97245 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 97304
|| |||| | | ||||||| ||||| || | ||||||| | || ||||||||
Sbjct 178487 ATC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 178543
Query 97305 GGG 97307
||
Sbjct 178544 AGG 178546
>seq11347
Length=47098
Score = 84.2 bits (92), Expect = 2e-11
Identities = 125/177 (71%), Gaps = 3/177 (2%)
Strand=Plus/Minus
Query 97131 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97190
||||| ||||| ||| |||| || || || ||||||||||| || |||| || ||
Sbjct 25164 GTTGGCCTTGATGGTGCCGGTGATGACGTCGACCGAGGGCCGCTGGGTGGCCATGATCAG 25105
Query 97191 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97250
|| || ||||| ||||| ||| ||||||| | ||| | | | |||||| ||
Sbjct 25104 GTGGATGCCGGCGGCGCGGGCCATCTGGGCCAGGCGCTGCACGGCGCCCTCGATGTC--- 25048
Query 97251 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGG 97307
|||| | || ||||||| ||||| || | ||||||| || ||||| | |||||
Sbjct 25047 CTTGCCGGCGACCATCATCAGGTCGGCCACCTCGTCGATGACCACCACCAGATAGGG 24991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 353631085620470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |