Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq11739 295 2e-74
seq10981 143 8e-29
seq8237 100 9e-16
seq6169 93.3 1e-13
seq7352 89.7 2e-12
>seq11739
Length=237542
Score = 295 bits (326), Expect = 2e-74
Identities = 462/650 (71%), Gaps = 17/650 (3%)
Strand=Plus/Plus
Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836
|||| || || ||||||||||||||||| | || |||||| | || | || | |||
Sbjct 35898 TTGGACCGACAGGTTCAGGTAAAACATTGCTGGCACAAACACTTGCACGTTTGCTTGATG 35957
Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896
||||| | || || |||||||||| |||| || |||||||||||||| ||||||||||
Sbjct 35958 TACCTTTTGCAATGGCTGATGCAACAACTTTGACCGAAGCTGGTTATGTTGGTGAAGATG 36017
Query 188897 TGGAAAACGT-ATT--GCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGG 188953
| |||||| | ||| | | ||| ||| ||| ||||||||| | ||| |||
Sbjct 36018 TTGAAAACATTATTCAGAAACTTTTG---CAAAAAGCGGATTACGATGTAGAAAAAGCAC 36074
Query 188954 AACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACAT 189013
|| || ||| | || || |||||| | || || ||| | | ||||| |||| | | |
Sbjct 36075 AAAAGGGCATTATCTACATTGATGAAATTGACAAGATTACCCGTAAATCTGAAAACCCTT 36134
Query 189014 CCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAG 189073
| ||||| || ||||| |||||||| || || || ||||| || || ||||| |||||||
Sbjct 36135 CGATTACACGTGATGTGTCTGGCGAGGGCGTGCAACAAGCATTGTTGAAAATGATTGAAG 36194
Query 189074 GTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTG 189133
|||| |||||| | |||| ||||||||||| |||||||| || || ||||| | ||
Sbjct 36195 GTACGGTTGCGTCAATTCCGCCTCAAGGTGGACGTAAACATCCACAGCAAGAGTTTATTC 36254
Query 189134 AAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACA 189193
|| | ||||| | |||||||||||||| |||||| || || ||||||||||||
Sbjct 36255 AAGTTGATACTGCAAATATCTTGTTTATCTGTGGTGGTGCATTCTCTGGTCTTGAAAAAG 36314
Query 189194 TTAT-CAAGAGACGCGCTACAAAATCAACTTTAGGTTTTGATGATAGTGTAGA--TAAAG 189250
|| | ||| | ||| | | |||| | | || ||| | | ||| |||||
Sbjct 36315 TTGTGCAACA-ACG-TCAAGAAAA--AGGT---GGCATTGGCTTCACCGCAGACGTAAAG 36367
Query 189251 TA-CAAGAAGAAATCAAGGATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATT 189309
| |||| || | ||| | | | || |||||| || || || | |||| |
Sbjct 36368 AATAAAGACGATAGTAAGAAAGTATCTGAATTATTCCGTCAAGTTGAAGCTGCAGATTTG 36427
Query 189310 GTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAAC 189369
|| || | ||||||||||||||| || ||||| ||| |||| || || ||||| ||| |
Sbjct 36428 GTGAAATTTGGTTTAATTCCAGAGTTCATTGGTCGTTTACCTGTGATTGCAACACTTGAA 36487
Query 189370 AAACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCGCAAAACGC 189419
| ||||||| ||| || ||||| | |||||||| || || |||| ||
Sbjct 36488 GAGCTTGATCAAGAAGCCTTGATGCAGATTTTAACAGAACCAAAAAATGC 36537
>seq10981
Length=80740
Score = 143 bits (158), Expect = 8e-29
Identities = 228/323 (71%), Gaps = 3/323 (1%)
Strand=Plus/Minus
Query 188753 TCAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTC 188812
|||||||| | ||| || | | |||||||||| || ||||||||||| || | || |
Sbjct 54899 TCAAAAAAGC-AATATTTTGCTGATTGGCCCTACAGGCTCAGGTAAAACCTTGCTCGCGC 54841
Query 188813 AAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAG 188872
|||| ||||| | | || |||| || | | || | ||||| || | || || |
Sbjct 54840 AAACCTTGGCACGTCTATTGGATGTGCCGTTTGTGATGGCAGATGCTACCACCTTGACTG 54781
Query 188873 AAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGC-T 188931
|||| || ||||| |||||||| || ||||| | ||| | | || | || |
Sbjct 54780 AAGCCGGGTATGTGGGTGAAGACGTTGAAAATATTATGCAAAAACTTTTGCA-GAAGTGT 54722
Query 188932 GATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATT 188991
|||||||| | ||| ||| |||| || ||||| ||||| || ||||| || ||||||
Sbjct 54721 GATTACGACGTTGAAAAAGCACAACGCGGCATTGTCTATATTGACGAAGTGGACAAAATT 54662
Query 188992 GCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAA 189051
| | ||||| || | ||||||| ||||| |||||||| || || || || ||||||
Sbjct 54661 TCCCGTAAATCTGACAATCCATCCATCACCCGTGATGTATCGGGTGAGGGCGTGCAGCAA 54602
Query 189052 GCTTTATTAAAAATCATTGAAGG 189074
|||||||| || | ||||| ||
Sbjct 54601 GCTTTATTGAAGCTGATTGAGGG 54579
>seq8237
Length=506431
Score = 100 bits (110), Expect = 9e-16
Identities = 196/286 (69%), Gaps = 13/286 (5%)
Strand=Plus/Minus
Query 182238 TCGAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGC 182297
||| || ||||| || | ||||| || |||||||| || ||||| | | | ||
Sbjct 248993 TCGTGCATTACCAGACGTGAGAGATGGTTTAAAACCTGTTCATCGTCGTGTGCTGTTCGC 248934
Query 182298 TTTATGGGATTTAGG-AATG-CTACCTCATAAACCATATCGAAAATCAGCAACAGTGAAT 182355
| | || ||||| || | ||| | | ||| | ||| |||||| ||| || |
Sbjct 248933 TATGCACGAGTTAGGCAACGACTA--TAACAAAGCCTATAAAAAATCTGCACGTGTTGTT 248876
Query 182356 GGCCACGTAATGGGTAATTTCCATCCACATGGTGATAC------TTATGGTGTAATGGTA 182409
|| ||||||| ||||| | || |||||||||||| | ||||| ||| ||
Sbjct 248875 GGTGACGTAATCGGTAAATATCACCCACATGGTGATTCAGCTGTTTATGAAACAATTGTT 248816
Query 182410 AATATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGT 182469
|||| | | || || ||| | || |||| | | ||||||||||||||||||||||||
Sbjct 248815 CGTATGGCTCAAGATTTTAGTCTACGTTATCAATTGGTTGATGGTCAGGGTAACTTTGGT 248756
Query 182470 AACCCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAG 182515
| | |||||||| | |||||||| ||||||||||| ||||
Sbjct 248755 ---TCTGTCGATGGTGACAGCGCAGCAGCAATGCGTTATACCGAAG 248713
>seq6169
Length=202695
Score = 93.3 bits (102), Expect = 1e-13
Identities = 127/173 (73%), Gaps = 7/173 (4%)
Strand=Plus/Minus
Query 309192 TTTAATGTTTGATATTGCTTTAGGGAATGGTA---TACCAAAAGGTCGTATTATTGAGTT 309248
||||| |||||||||| || || | ||| |||||||||||||||| |||| |
Sbjct 77930 TTTAACACTTGATATTGCATTGGGTATTGGGGGCTTACCAAAAGGTCGTATCGTTGAAAT 77871
Query 309249 TTTTGGGGCAGAATCTTCAGGTAAAAC-ACTTTG-CGCTACACGAGCAATGGCTCAAGTG 309306
|| || | |||||||| |||||||| || || ||||||| ||| || || |||
Sbjct 77870 TTACGGTCCTGAATCTTCTGGTAAAACGACAATGACGCTACA--AGCCATTGCGCAATGC 77813
Query 309307 CAACAACAAGGTGGTATTTGTGCTTTAATAGATATGGAACATGCATTCGATCC 309359
||| || |||||| | ||||| || |||||| ||||||||| || |||||
Sbjct 77812 CAAAAAGCAGGTGGAACATGTGCCTTTATAGATGCGGAACATGCTTTAGATCC 77760
>seq7352
Length=278960
Score = 89.7 bits (98), Expect = 2e-12
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 403941 GCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTCGAA 404000
||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 263231 GCGCCCTTAGCTCAGCTGGATAGAGCACTCGCCTTCTAAGCGAGCGGTCGCAGGTTCGAA 263172
Query 404001 TCCTACCAGGCGCG 404014
|||| | ||||||
Sbjct 263171 TCCTGCAGGGCGCG 263158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1591603251335232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |