Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq11739 295 2e-74 seq10981 143 8e-29 seq8237 100 9e-16 seq6169 93.3 1e-13 seq7352 89.7 2e-12 >seq11739 Length=237542 Score = 295 bits (326), Expect = 2e-74 Identities = 462/650 (71%), Gaps = 17/650 (3%) Strand=Plus/Plus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 |||| || || ||||||||||||||||| | || |||||| | || | || | ||| Sbjct 35898 TTGGACCGACAGGTTCAGGTAAAACATTGCTGGCACAAACACTTGCACGTTTGCTTGATG 35957 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 ||||| | || || |||||||||| |||| || |||||||||||||| |||||||||| Sbjct 35958 TACCTTTTGCAATGGCTGATGCAACAACTTTGACCGAAGCTGGTTATGTTGGTGAAGATG 36017 Query 188897 TGGAAAACGT-ATT--GCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGG 188953 | |||||| | ||| | | ||| ||| ||| ||||||||| | ||| ||| Sbjct 36018 TTGAAAACATTATTCAGAAACTTTTG---CAAAAAGCGGATTACGATGTAGAAAAAGCAC 36074 Query 188954 AACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACAT 189013 || || ||| | || || |||||| | || || ||| | | ||||| |||| | | | Sbjct 36075 AAAAGGGCATTATCTACATTGATGAAATTGACAAGATTACCCGTAAATCTGAAAACCCTT 36134 Query 189014 CCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAG 189073 | ||||| || ||||| |||||||| || || || ||||| || || ||||| ||||||| Sbjct 36135 CGATTACACGTGATGTGTCTGGCGAGGGCGTGCAACAAGCATTGTTGAAAATGATTGAAG 36194 Query 189074 GTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTG 189133 |||| |||||| | |||| ||||||||||| |||||||| || || ||||| | || Sbjct 36195 GTACGGTTGCGTCAATTCCGCCTCAAGGTGGACGTAAACATCCACAGCAAGAGTTTATTC 36254 Query 189134 AAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACA 189193 || | ||||| | |||||||||||||| |||||| || || |||||||||||| Sbjct 36255 AAGTTGATACTGCAAATATCTTGTTTATCTGTGGTGGTGCATTCTCTGGTCTTGAAAAAG 36314 Query 189194 TTAT-CAAGAGACGCGCTACAAAATCAACTTTAGGTTTTGATGATAGTGTAGA--TAAAG 189250 || | ||| | ||| | | |||| | | || ||| | | ||| ||||| Sbjct 36315 TTGTGCAACA-ACG-TCAAGAAAA--AGGT---GGCATTGGCTTCACCGCAGACGTAAAG 36367 Query 189251 TA-CAAGAAGAAATCAAGGATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATT 189309 | |||| || | ||| | | | || |||||| || || || | |||| | Sbjct 36368 AATAAAGACGATAGTAAGAAAGTATCTGAATTATTCCGTCAAGTTGAAGCTGCAGATTTG 36427 Query 189310 GTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAAC 189369 || || | ||||||||||||||| || ||||| ||| |||| || || ||||| ||| | Sbjct 36428 GTGAAATTTGGTTTAATTCCAGAGTTCATTGGTCGTTTACCTGTGATTGCAACACTTGAA 36487 Query 189370 AAACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCGCAAAACGC 189419 | ||||||| ||| || ||||| | |||||||| || || |||| || Sbjct 36488 GAGCTTGATCAAGAAGCCTTGATGCAGATTTTAACAGAACCAAAAAATGC 36537 >seq10981 Length=80740 Score = 143 bits (158), Expect = 8e-29 Identities = 228/323 (71%), Gaps = 3/323 (1%) Strand=Plus/Minus Query 188753 TCAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTC 188812 |||||||| | ||| || | | |||||||||| || ||||||||||| || | || | Sbjct 54899 TCAAAAAAGC-AATATTTTGCTGATTGGCCCTACAGGCTCAGGTAAAACCTTGCTCGCGC 54841 Query 188813 AAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAG 188872 |||| ||||| | | || |||| || | | || | ||||| || | || || | Sbjct 54840 AAACCTTGGCACGTCTATTGGATGTGCCGTTTGTGATGGCAGATGCTACCACCTTGACTG 54781 Query 188873 AAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGC-T 188931 |||| || ||||| |||||||| || ||||| | ||| | | || | || | Sbjct 54780 AAGCCGGGTATGTGGGTGAAGACGTTGAAAATATTATGCAAAAACTTTTGCA-GAAGTGT 54722 Query 188932 GATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATT 188991 |||||||| | ||| ||| |||| || ||||| ||||| || ||||| || |||||| Sbjct 54721 GATTACGACGTTGAAAAAGCACAACGCGGCATTGTCTATATTGACGAAGTGGACAAAATT 54662 Query 188992 GCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAA 189051 | | ||||| || | ||||||| ||||| |||||||| || || || || |||||| Sbjct 54661 TCCCGTAAATCTGACAATCCATCCATCACCCGTGATGTATCGGGTGAGGGCGTGCAGCAA 54602 Query 189052 GCTTTATTAAAAATCATTGAAGG 189074 |||||||| || | ||||| || Sbjct 54601 GCTTTATTGAAGCTGATTGAGGG 54579 >seq8237 Length=506431 Score = 100 bits (110), Expect = 9e-16 Identities = 196/286 (69%), Gaps = 13/286 (5%) Strand=Plus/Minus Query 182238 TCGAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGC 182297 ||| || ||||| || | ||||| || |||||||| || ||||| | | | || Sbjct 248993 TCGTGCATTACCAGACGTGAGAGATGGTTTAAAACCTGTTCATCGTCGTGTGCTGTTCGC 248934 Query 182298 TTTATGGGATTTAGG-AATG-CTACCTCATAAACCATATCGAAAATCAGCAACAGTGAAT 182355 | | || ||||| || | ||| | | ||| | ||| |||||| ||| || | Sbjct 248933 TATGCACGAGTTAGGCAACGACTA--TAACAAAGCCTATAAAAAATCTGCACGTGTTGTT 248876 Query 182356 GGCCACGTAATGGGTAATTTCCATCCACATGGTGATAC------TTATGGTGTAATGGTA 182409 || ||||||| ||||| | || |||||||||||| | ||||| ||| || Sbjct 248875 GGTGACGTAATCGGTAAATATCACCCACATGGTGATTCAGCTGTTTATGAAACAATTGTT 248816 Query 182410 AATATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGT 182469 |||| | | || || ||| | || |||| | | |||||||||||||||||||||||| Sbjct 248815 CGTATGGCTCAAGATTTTAGTCTACGTTATCAATTGGTTGATGGTCAGGGTAACTTTGGT 248756 Query 182470 AACCCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAG 182515 | | |||||||| | |||||||| ||||||||||| |||| Sbjct 248755 ---TCTGTCGATGGTGACAGCGCAGCAGCAATGCGTTATACCGAAG 248713 >seq6169 Length=202695 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/173 (73%), Gaps = 7/173 (4%) Strand=Plus/Minus Query 309192 TTTAATGTTTGATATTGCTTTAGGGAATGGTA---TACCAAAAGGTCGTATTATTGAGTT 309248 ||||| |||||||||| || || | ||| |||||||||||||||| |||| | Sbjct 77930 TTTAACACTTGATATTGCATTGGGTATTGGGGGCTTACCAAAAGGTCGTATCGTTGAAAT 77871 Query 309249 TTTTGGGGCAGAATCTTCAGGTAAAAC-ACTTTG-CGCTACACGAGCAATGGCTCAAGTG 309306 || || | |||||||| |||||||| || || ||||||| ||| || || ||| Sbjct 77870 TTACGGTCCTGAATCTTCTGGTAAAACGACAATGACGCTACA--AGCCATTGCGCAATGC 77813 Query 309307 CAACAACAAGGTGGTATTTGTGCTTTAATAGATATGGAACATGCATTCGATCC 309359 ||| || |||||| | ||||| || |||||| ||||||||| || ||||| Sbjct 77812 CAAAAAGCAGGTGGAACATGTGCCTTTATAGATGCGGAACATGCTTTAGATCC 77760 >seq7352 Length=278960 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 403941 GCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTCGAA 404000 ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 263231 GCGCCCTTAGCTCAGCTGGATAGAGCACTCGCCTTCTAAGCGAGCGGTCGCAGGTTCGAA 263172 Query 404001 TCCTACCAGGCGCG 404014 |||| | |||||| Sbjct 263171 TCCTGCAGGGCGCG 263158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591603251335232