Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023729.1
Length=43036
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 246 8e-61
seq6089 212 2e-50
>seq12569
Length=80069
Score = 246 bits (272), Expect = 8e-61
Identities = 331/458 (72%), Gaps = 12/458 (3%)
Strand=Plus/Minus
Query 36442 GTGGATCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 36501
|||| ||||| |||||| || |||||||| | || |||||||| |||||| ||||
Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639
Query 36502 AACGATTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACA 36561
||||||||| ||||||||||||||||| ||||||||| |||||||||| ||| |
Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579
Query 36562 CCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 36621
||| ||||||||||| | |||||||||||||| | |||| |||||| ||||||||
Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519
Query 36622 ATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGCCGAG 36681
||| || || | |||||| |||| | | ||||| | |||||| ||| ||
Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTT---CGCGGA- 62463
Query 36682 GCGATCTTCC------ACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTC 36735
||| || || | |||||| |||||||| |||||||||| | ||| |
Sbjct 62462 -CGA-CTGCCGGGCGTGCTTCCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405
Query 36736 GTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGC 36795
| ||||| || || || || ||||||||||| || |||||||||||| ||||||||||
Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345
Query 36796 AAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCG 36855
|| |||| | ||||||| ||| |||||| | | |||||||||| ||| |||
Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285
Query 36856 CAAACAGACAGGTCCCGTGGGTATGCCGACGTACCGGT 36893
| | ||| |||| || || |||||| |||||
Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGT 62247
Score = 190 bits (210), Expect = 6e-44
Identities = 447/663 (67%), Gaps = 15/663 (2%)
Strand=Plus/Minus
Query 35056 CACCAGCGCGATCTGGTGCGCTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 35114
|| ||||| | |||| ||||||||||| | | || ||| ||| | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014
Query 35115 GTTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCGCCTGTCCCTGGCGAAGCA 35174
||||| |||| || | ||| | ||| ||||||| ||||| || |||| |
Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGAT--TGCGCGGATCATGCGCGA-GAT 63957
Query 35175 CGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGA 35234
| |||||| | || |||||||| || ||||| ||||||||| |||||| | ||
Sbjct 63956 CTCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGGA 63897
Query 35235 CGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGG--- 35291
|||| ||||| ||| | ||||||| |||| || | || || | | ||
Sbjct 63896 CGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATCC 63837
Query 35292 CGACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACT 35351
|| || |||| || |||||||| |||| || || ||||| ||| | ||||| | ||
Sbjct 63836 CGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-CT 63778
Query 35352 GTT-CACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGG---TCCAAGA 35407
||| | ||| || || || |||||||| ||||| ||||| ||||| |||||||
Sbjct 63777 GTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAGA 63718
Query 35408 CCTACCAGTCGTTCCTCGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCCACCGCCA 35467
||| | |||| | ||||||||| ||| |||| || | ||||||||| ||||
Sbjct 63717 CCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCCA 63658
Query 35468 CACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGG 35527
| || ||||| ||| | || |||||| || ||| ||| | || || |||||||
Sbjct 63657 CGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATGG 63598
Query 35528 ACACCGGTGCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACGAAGGCGAACAACCTCA 35587
| ||| ||| || || | |||| || ||| | | | || || |||||
Sbjct 63597 ATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGCCCTCA 63538
Query 35588 CCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACG-TGGGCGGCGTTC 35646
|||| ||||||| ||||| | |||||||||||||||| || || | |||| ||||
Sbjct 63537 CCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGGGGTCTGTTC 63479
Query 35647 GTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTGGAG 35706
|| || ||| || ||||| | || | |||||||||||||||||| ||| ||
Sbjct 63478 GTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTGCAG 63419
Query 35707 GTG 35709
|||
Sbjct 63418 GTG 63416
Score = 102 bits (112), Expect = 2e-17
Identities = 166/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 37307 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGATCGGCTGATCACTCGTTTCTCGA 37366
||| |||| |||||||||||| ||||| ||||| || |||||||||| | | ||
Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861
Query 37367 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 37426
| || ||||| |||||||||| ||||||||||| ||| |||||||| | || ||
Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801
Query 37427 TGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 37486
| || | || ||| |||| | | ||||||||| || | ||||| |||| | ||
Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741
Query 37487 TCAAGTATTTGCAAGCCGAGGAGCGCCGG--CGCGACATGCCAAGCCTGTTCGACCT 37541
| ||| | | | ||| || |||| | ||||| ||| | ||| ||||||||
Sbjct 61740 TGAAGCACGTCGAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686
>seq6089
Length=13452
Score = 212 bits (234), Expect = 2e-50
Identities = 467/692 (67%), Gaps = 30/692 (4%)
Strand=Plus/Minus
Query 35056 CACCAGCGCGATCTGGTGCGCTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 35115
|||||| ||| ||||| || ||||| |||| || || | |||||||||||||| |||
Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714
Query 35116 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCGCCTGTCCCTGGCGA--AGC 35173
||||| |||||||| | || ||||||||||||||| |||||| | | ||||| |||
Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGC 4656
Query 35174 ACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 35233
|||||| | | |||||||| |||||||| ||||| |||||| ||| | ||
Sbjct 4655 TGGGCGGCCGGCAG---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599
Query 35234 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGCACAGA--AGAAGTCG---- 35287
|||| | ||||| ||| | || | ||| | ||| | || | ||| |||
Sbjct 4598 ACGCGCTGATGCTGGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGC 4539
Query 35288 --GCGG------CGAC--GGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAA 35335
|||| ||| || | || | || ||||||||||| ||||||||| || |
Sbjct 4538 ATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCA 4479
Query 35336 AGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGACGAGGCGAGCGTGC-TGCGCTCG 35394
|| | |||| ||| | |||| |||| || || ||||| || | ||||| |||||
Sbjct 4478 AGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGT 4420
Query 35395 TT---CGGGTCCAAGACCTACCAGTCGTTCCTCGAGCTGTTCGACGCGGTGCCCTACCGG 35451
|| ||| ||||||||| || |||| | ||||||||||| ||| || |
Sbjct 4419 TTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAG 4360
Query 35452 TACGTCGCCACCGCCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGC 35511
| |||||||| ||||| || ||||||||| || | |||||| | ||| || | |
Sbjct 4359 TTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCC 4300
Query 35512 TATCTCGGGGTGATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACG 35571
| || | | | ||||| ||| ||| || || | ||| | ||| || | |
Sbjct 4299 TTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAG 4240
Query 35572 AAGGCGAACAACCTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAAC 35631
||||| || | || ||| || | ||||| || ||| | || |||||||||||| ||||
Sbjct 4239 AAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAAT 4180
Query 35632 ACGTGGGCGGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGAC 35691
| ||||| || ||||| || ||| || || ||| || | ||||| |||
Sbjct 4179 AGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGAC 4120
Query 35692 CTGCCGCCGCTGGAGGTGTTGTGGCATGAGGT 35723
||||| |||||| ||| |||||||||||
Sbjct 4119 CTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088
Score = 190 bits (210), Expect = 6e-44
Identities = 320/459 (70%), Gaps = 12/459 (3%)
Strand=Plus/Minus
Query 36448 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAT 36507
||||||||||||||| | || || || ||| || || || |||||||||| || |||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 36508 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 36567
|||||||| |||||||| || ||||||| |||||||||||||| || || || ||
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 36568 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 36627
||||||||| || | ||||||||| | || || || ||||| ||| | ||
Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198
Query 36628 TTC-----GGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGC-CGAG 36681
||| |||| | || || ||| | | ||| | ||||| || || ||
Sbjct 3197 TTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCT 3141
Query 36682 GCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACC 36741
|| ||| || ||| || ||||||| ||| || |||||| | || |||| |||
Sbjct 3140 GC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACC 3082
Query 36742 GATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGAC 36801
||||| || || || || || || |||||||||||| ||||||||||||| ||
Sbjct 3081 GATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGAT 3022
Query 36802 GCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACA 36861
|||| | |||||||||||| || ||||| | || ||||||| ||| |||| ||
Sbjct 3021 GCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACC 2962
Query 36862 GACAGGTCCCGTGGGTATGCCGACGTACCGGTCATCAAG 36900
||| || | || |||||||| || ||||||| ||||
Sbjct 2961 GACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAAG 2923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137568994738484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |