Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023729.1 Length=43036 Score E Sequences producing significant alignments: (Bits) Value seq12569 246 8e-61 seq6089 212 2e-50 >seq12569 Length=80069 Score = 246 bits (272), Expect = 8e-61 Identities = 331/458 (72%), Gaps = 12/458 (3%) Strand=Plus/Minus Query 36442 GTGGATCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 36501 |||| ||||| |||||| || |||||||| | || |||||||| |||||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 36502 AACGATTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACA 36561 ||||||||| ||||||||||||||||| ||||||||| |||||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 36562 CCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 36621 ||| ||||||||||| | |||||||||||||| | |||| |||||| |||||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 36622 ATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGCCGAG 36681 ||| || || | |||||| |||| | | ||||| | |||||| ||| || Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTT---CGCGGA- 62463 Query 36682 GCGATCTTCC------ACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTC 36735 ||| || || | |||||| |||||||| |||||||||| | ||| | Sbjct 62462 -CGA-CTGCCGGGCGTGCTTCCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 36736 GTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGC 36795 | ||||| || || || || ||||||||||| || |||||||||||| |||||||||| Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345 Query 36796 AAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCG 36855 || |||| | ||||||| ||| |||||| | | |||||||||| ||| ||| Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285 Query 36856 CAAACAGACAGGTCCCGTGGGTATGCCGACGTACCGGT 36893 | | ||| |||| || || |||||| ||||| Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGT 62247 Score = 190 bits (210), Expect = 6e-44 Identities = 447/663 (67%), Gaps = 15/663 (2%) Strand=Plus/Minus Query 35056 CACCAGCGCGATCTGGTGCGCTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 35114 || ||||| | |||| ||||||||||| | | || ||| ||| | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014 Query 35115 GTTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCGCCTGTCCCTGGCGAAGCA 35174 ||||| |||| || | ||| | ||| ||||||| ||||| || |||| | Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGAT--TGCGCGGATCATGCGCGA-GAT 63957 Query 35175 CGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGA 35234 | |||||| | || |||||||| || ||||| ||||||||| |||||| | || Sbjct 63956 CTCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGGA 63897 Query 35235 CGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGG--- 35291 |||| ||||| ||| | ||||||| |||| || | || || | | || Sbjct 63896 CGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATCC 63837 Query 35292 CGACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACT 35351 || || |||| || |||||||| |||| || || ||||| ||| | ||||| | || Sbjct 63836 CGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-CT 63778 Query 35352 GTT-CACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGG---TCCAAGA 35407 ||| | ||| || || || |||||||| ||||| ||||| ||||| ||||||| Sbjct 63777 GTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAGA 63718 Query 35408 CCTACCAGTCGTTCCTCGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCCACCGCCA 35467 ||| | |||| | ||||||||| ||| |||| || | ||||||||| |||| Sbjct 63717 CCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCCA 63658 Query 35468 CACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGG 35527 | || ||||| ||| | || |||||| || ||| ||| | || || ||||||| Sbjct 63657 CGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATGG 63598 Query 35528 ACACCGGTGCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACGAAGGCGAACAACCTCA 35587 | ||| ||| || || | |||| || ||| | | | || || ||||| Sbjct 63597 ATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGCCCTCA 63538 Query 35588 CCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACG-TGGGCGGCGTTC 35646 |||| ||||||| ||||| | |||||||||||||||| || || | |||| |||| Sbjct 63537 CCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGGGGTCTGTTC 63479 Query 35647 GTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTGGAG 35706 || || ||| || ||||| | || | |||||||||||||||||| ||| || Sbjct 63478 GTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTGCAG 63419 Query 35707 GTG 35709 ||| Sbjct 63418 GTG 63416 Score = 102 bits (112), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 37307 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGATCGGCTGATCACTCGTTTCTCGA 37366 ||| |||| |||||||||||| ||||| ||||| || |||||||||| | | || Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861 Query 37367 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 37426 | || ||||| |||||||||| ||||||||||| ||| |||||||| | || || Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801 Query 37427 TGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 37486 | || | || ||| |||| | | ||||||||| || | ||||| |||| | || Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741 Query 37487 TCAAGTATTTGCAAGCCGAGGAGCGCCGG--CGCGACATGCCAAGCCTGTTCGACCT 37541 | ||| | | | ||| || |||| | ||||| ||| | ||| |||||||| Sbjct 61740 TGAAGCACGTCGAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686 >seq6089 Length=13452 Score = 212 bits (234), Expect = 2e-50 Identities = 467/692 (67%), Gaps = 30/692 (4%) Strand=Plus/Minus Query 35056 CACCAGCGCGATCTGGTGCGCTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 35115 |||||| ||| ||||| || ||||| |||| || || | |||||||||||||| ||| Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714 Query 35116 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCGCCTGTCCCTGGCGA--AGC 35173 ||||| |||||||| | || ||||||||||||||| |||||| | | ||||| ||| Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGC 4656 Query 35174 ACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 35233 |||||| | | |||||||| |||||||| ||||| |||||| ||| | || Sbjct 4655 TGGGCGGCCGGCAG---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599 Query 35234 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGCACAGA--AGAAGTCG---- 35287 |||| | ||||| ||| | || | ||| | ||| | || | ||| ||| Sbjct 4598 ACGCGCTGATGCTGGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGC 4539 Query 35288 --GCGG------CGAC--GGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAA 35335 |||| ||| || | || | || ||||||||||| ||||||||| || | Sbjct 4538 ATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCA 4479 Query 35336 AGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGACGAGGCGAGCGTGC-TGCGCTCG 35394 || | |||| ||| | |||| |||| || || ||||| || | ||||| ||||| Sbjct 4478 AGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGT 4420 Query 35395 TT---CGGGTCCAAGACCTACCAGTCGTTCCTCGAGCTGTTCGACGCGGTGCCCTACCGG 35451 || ||| ||||||||| || |||| | ||||||||||| ||| || | Sbjct 4419 TTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAG 4360 Query 35452 TACGTCGCCACCGCCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGC 35511 | |||||||| ||||| || ||||||||| || | |||||| | ||| || | | Sbjct 4359 TTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCC 4300 Query 35512 TATCTCGGGGTGATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACG 35571 | || | | | ||||| ||| ||| || || | ||| | ||| || | | Sbjct 4299 TTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAG 4240 Query 35572 AAGGCGAACAACCTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAAC 35631 ||||| || | || ||| || | ||||| || ||| | || |||||||||||| |||| Sbjct 4239 AAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAAT 4180 Query 35632 ACGTGGGCGGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGAC 35691 | ||||| || ||||| || ||| || || ||| || | ||||| ||| Sbjct 4179 AGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGAC 4120 Query 35692 CTGCCGCCGCTGGAGGTGTTGTGGCATGAGGT 35723 ||||| |||||| ||| ||||||||||| Sbjct 4119 CTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088 Score = 190 bits (210), Expect = 6e-44 Identities = 320/459 (70%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 36448 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAT 36507 ||||||||||||||| | || || || ||| || || || |||||||||| || ||| Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 36508 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 36567 |||||||| |||||||| || ||||||| |||||||||||||| || || || || Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 36568 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 36627 ||||||||| || | ||||||||| | || || || ||||| ||| | || Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198 Query 36628 TTC-----GGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGC-CGAG 36681 ||| |||| | || || ||| | | ||| | ||||| || || || Sbjct 3197 TTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCT 3141 Query 36682 GCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACC 36741 || ||| || ||| || ||||||| ||| || |||||| | || |||| ||| Sbjct 3140 GC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACC 3082 Query 36742 GATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGAC 36801 ||||| || || || || || || |||||||||||| ||||||||||||| || Sbjct 3081 GATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGAT 3022 Query 36802 GCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACA 36861 |||| | |||||||||||| || ||||| | || ||||||| ||| |||| || Sbjct 3021 GCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACC 2962 Query 36862 GACAGGTCCCGTGGGTATGCCGACGTACCGGTCATCAAG 36900 ||| || | || |||||||| || ||||||| |||| Sbjct 2961 GACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAAG 2923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137568994738484